mRNA_M-pyrifera_M_contig127169.5477.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127169.5477.1
Unique NamemRNA_M-pyrifera_M_contig127169.5477.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: A0A7J6X2Z3_THATH (Pre-mrna-splicing factor cwc22-like protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6X2Z3_THATH)

HSP 1 Score: 100 bits (249), Expect = 4.650e-23
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    1 AHLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAPHLLAHHE 324
            AHLL  DALPW+V + +R+TE DTTS  R+ +K +FQEL   +G   L +RL DP +++  F+ +FP DHPRNTRFA NF+ SI    + + L+ +L+  P L+   +
Sbjct:   89 AHLLGTDALPWNVLSYIRLTEDDTTSSSRIFIKILFQELSEHLGIRLLNERLSDP-LMQTDFESIFPKDHPRNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQ 195
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BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: A0A7J6VIB8_THATH (Pre-mrna-splicing factor cwc22-like protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VIB8_THATH)

HSP 1 Score: 97.1 bits (240), Expect = 1.460e-22
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 AHLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAPHLLAHHEKEI 333
            AHLL  DALPW+V + +R+T+ DTTS   + +K +FQEL   +G   L +RL DP +++  FK +FP DHPRNTRFA NF+ SI    + + L+ +L+  P L+   +  +
Sbjct:   18 AHLLDTDALPWNVLSYIRLTKDDTTSSSHIFIKILFQELSEHLGIRLLNERLSDP-LMQTDFKSIFPKDHPRNTRFAINFFTSIGLGGIIENLREYLKNMPRLIMQQQNVV 127
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BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: D3B6H8_POLPP (Initiation factor eIF-4 gamma middle domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B6H8_POLPP)

HSP 1 Score: 101 bits (252), Expect = 6.420e-22
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:    1 AHLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAPHLLAHHEKE 330
            AHLL  DALPWS+F  + I E++T S  R+ +K +FQE++  +G +K   RL DP M    FKG+FP D+P+NTR+A NF+ SI    L   L+ +L+ AP ++   +KE
Sbjct:  660 AHLLFTDALPWSIFEYIHINEEETNSASRIFIKIIFQEINEFIGIQKFNDRLQDPSMQEY-FKGIFPKDNPKNTRYAINFFTSISLGALTHELREYLKNAPKMIMQQKKE 768
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BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: A0A812KVS3_9DINO (Cwc22 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KVS3_9DINO)

HSP 1 Score: 97.4 bits (241), Expect = 2.200e-21
Identity = 50/106 (47.17%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:    1 AHLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAPHLLAH 318
            AHLL  DA+PWS++A V+ITE  TTS  R+ +K +FQEL    G +KL  RL++ E ++  F GLFP DHP+N RFA N++ +I    L + L+ FL+ A    AH
Sbjct:  141 AHLLYTDAIPWSIWAQVKITEDTTTSSSRIFIKVIFQELSEQWGVKKLVDRLNEDE-LKPFFTGLFPKDHPKNVRFAINYFTAIGLGVLTEDLRGFLEEANARAAH 245
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BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: A0A024G2H1_9STRA (MI domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2H1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.400e-21
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 AHLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAPHLLAHH 321
            AHLL  DALPW++   +R+ E++TTS  R+ +K + QEL   MG + L++RL D E ++  F GLFP DHPRNTRFA NF+ SI    L   L+ FL+ AP L+ ++
Sbjct:  542 AHLLFTDALPWTILEYIRLNEEETTSSSRIFIKMLCQELAEHMGMKTLKERLTD-EYMQETFAGLFPKDHPRNTRFAINFFTSIGLGGLTTELREFLKNAPKLIMNN 647
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BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: UPI000C87514E (pre-mRNA-splicing factor CWC22 homolog n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C87514E)

HSP 1 Score: 98.6 bits (244), Expect = 7.740e-21
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:    1 AHLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAPHLLAHHEKEI 333
            AHLL   ALPW V A +R+TE DTTS  R+ +K +FQEL   +G   L +RL++P M +  F  +FP DHP+NTRFA NF+ SI    + + L+  L+  P ++   +K++
Sbjct:  765 AHLLGTSALPWHVLAYIRLTEDDTTSSSRIFIKILFQELSEHLGIRLLNERLNEPTM-KDSFDSIFPKDHPKNTRFAINFFTSIGLGGITESLREHLKNMPRMIMEQQKQV 874
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BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: A0A7S0MWD1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MWD1_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 1.040e-20
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:    1 AHLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAPHLL 312
            AHLLA DA+PW++  AVRITE DTTS  R+ +K +FQEL   MG  +L  RL DP M    F G+FP D PRNTRF+ NF+ SI    L   ++ FL+  P ++
Sbjct:  323 AHLLATDAMPWTILQAVRITEDDTTSSSRIFIKILFQELAENMGLMELNGRLSDPTMEEY-FGGIFPKDAPRNTRFSINFFTSIGLGGLTDSMREFLKNMPKMI 425
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BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: A0A0C4ES16_PUCT1 (MI domain-containing protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4ES16_PUCT1)

HSP 1 Score: 98.2 bits (243), Expect = 1.040e-20
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:    4 HLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAPHLLAHHEKEI 333
            HLLA DA+PWSVF  +R+ E DTTS  R+ +K +FQE+   +G ++L +R  DP M    F GLFP D+P+NTRF+ N++ SI    L + ++  L+ AP L+    +E+
Sbjct:  530 HLLAQDAIPWSVFEVIRMNEDDTTSSSRIFVKIMFQEITEVLGLKRLAERFKDPSMQVW-FGGLFPIDNPKNTRFSINYFTSIGLGVLTEEMREHLKRAPQLIMAKRREL 638
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BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: A0A180GI51_PUCT1 (MI domain-containing protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180GI51_PUCT1)

HSP 1 Score: 98.2 bits (243), Expect = 1.060e-20
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:    4 HLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAPHLLAHHEKEI 333
            HLLA DA+PWSVF  +R+ E DTTS  R+ +K +FQE+   +G ++L +R  DP M    F GLFP D+P+NTRF+ N++ SI    L + ++  L+ AP L+    +E+
Sbjct:  530 HLLAQDAIPWSVFEVIRMNEDDTTSSSRIFVKIMFQEITEVLGLKRLAERFKDPSMQVW-FGGLFPIDNPKNTRFSINYFTSIGLGVLTEEMREHLKRAPQLIMAKRREL 638
[Close]
BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Match: A0A168RTD2_ABSGL (MI domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168RTD2_ABSGL)

HSP 1 Score: 97.8 bits (242), Expect = 1.330e-20
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    4 HLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQRLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLAP 303
            H+   D+LPW+ FAA+R+TE DTTS  R+ +K +FQE+   MG +KL+ RL DP+ +   F G+FP D+P+NTRFA N++ SI    L + L+ +L+ AP
Sbjct:  440 HVFFTDSLPWTCFAAIRLTEDDTTSASRIFIKILFQEISEFMGLKKLKARLEDPDFVDY-FAGMFPRDNPKNTRFAINYWTSIGLGALTEDLRDWLRTAP 538
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127169.5477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J6X2Z3_THATH4.650e-2345.37Pre-mrna-splicing factor cwc22-like protein n=1 Ta... [more]
A0A7J6VIB8_THATH1.460e-2243.24Pre-mrna-splicing factor cwc22-like protein n=1 Ta... [more]
D3B6H8_POLPP6.420e-2244.55Initiation factor eIF-4 gamma middle domain-contai... [more]
A0A812KVS3_9DINO2.200e-2147.17Cwc22 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A024G2H1_9STRA7.400e-2147.66MI domain-containing protein n=1 Tax=Albugo candid... [more]
UPI000C87514E7.740e-2143.24pre-mRNA-splicing factor CWC22 homolog n=1 Tax=Dio... [more]
A0A7S0MWD1_9CHLO1.040e-2050.00Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A0C4ES16_PUCT11.040e-2043.64MI domain-containing protein n=1 Tax=Puccinia trit... [more]
A0A180GI51_PUCT11.060e-2043.64MI domain-containing protein n=1 Tax=Puccinia trit... [more]
A0A168RTD2_ABSGL1.330e-2047.00MI domain-containing protein n=1 Tax=Absidia glauc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127169contigM-pyrifera_M_contig127169:5..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score110.5
Seed ortholog evalue7.5e-22
Seed eggNOG ortholog109760.SPPG_06737T0
Preferred nameCWC22
KEGG koko:K13100
Hectar predicted targeting categorysignal peptide
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071006,GO:0071012,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.Pre-mRNA-splicing factor cwc-22
EggNOG OGs38ENJ@33154,3NU93@4751,KOG2140@1,KOG2140@2759
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.777715-CDS-M-pyrifera_M_contig127169:4..5051622815785.777715-CDS-M-pyrifera_M_contig127169:4..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127169 5..505 -
1692277568.5643468-CDS-M-pyrifera_M_contig127169:4..5051692277568.5643468-CDS-M-pyrifera_M_contig127169:4..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127169 5..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127169.5477.1prot_M-pyrifera_M_contig127169.5477.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127169 5..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127169.5477.1

>prot_M-pyrifera_M_contig127169.5477.1 ID=prot_M-pyrifera_M_contig127169.5477.1|Name=mRNA_M-pyrifera_M_contig127169.5477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
AHLLAADALPWSVFAAVRITEQDTTSHMRVLLKTVFQELHTAMGPEKLQQ
RLHDPEMIRGPFKGLFPADHPRNTRFAANFYISIRTPYLNKPLQAFLQLA
PHLLAHHEKEIAARRKEAGREETKHHSSSSSTTSSSSSSSSSSSSSSTTS
SSSSSTSSSSASSVSST
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mRNA from alignment at M-pyrifera_M_contig127169:5..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127169.5477.1 ID=mRNA_M-pyrifera_M_contig127169.5477.1|Name=mRNA_M-pyrifera_M_contig127169.5477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig127169:5..505- (Macrocystis pyrifera P11B4 male)
GCGCACCTGCTGGCAGCCGACGCTCTCCCCTGGTCTGTCTTTGCCGCCGT
TCGCATCACCGAGCAAGACACCACAAGCCACATGCGAGTGCTGCTCAAGA
CCGTCTTCCAGGAACTGCACACCGCCATGGGCCCAGAGAAACTGCAGCAG
AGACTGCACGACCCGGAAATGATCAGAGGACCCTTCAAGGGACTCTTCCC
AGCAGACCACCCCAGGAACACCAGATTCGCCGCAAACTTTTACATCTCCA
TCCGAACCCCATACCTCAACAAACCACTGCAAGCCTTCCTCCAACTCGCG
CCACACCTCCTCGCACACCACGAGAAAGAAATCGCTGCAAGGAGGAAAGA
AGCGGGACGAGAAGAAACAAAACACCACTCCTCCTCATCCTCCACCACAT
CCTCATCCTCCTCCTCCTCCTCATCCTCATCCTCCTCCTCCACCACCTCC
TCCTCTTCCTCCTCTACCTCCTCCTCTTCTGCCTCCTCCGTGTCTTCAAC
T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127169:5..505-

>mRNA_M-pyrifera_M_contig127169.5477.1 ID=mRNA_M-pyrifera_M_contig127169.5477.1|Name=mRNA_M-pyrifera_M_contig127169.5477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig127169:5..505- (Macrocystis pyrifera P11B4 male)
GCGCACCTGCTGGCAGCCGACGCTCTCCCCTGGTCTGTCTTTGCCGCCGT
TCGCATCACCGAGCAAGACACCACAAGCCACATGCGAGTGCTGCTCAAGA
CCGTCTTCCAGGAACTGCACACCGCCATGGGCCCAGAGAAACTGCAGCAG
AGACTGCACGACCCGGAAATGATCAGAGGACCCTTCAAGGGACTCTTCCC
AGCAGACCACCCCAGGAACACCAGATTCGCCGCAAACTTTTACATCTCCA
TCCGAACCCCATACCTCAACAAACCACTGCAAGCCTTCCTCCAACTCGCG
CCACACCTCCTCGCACACCACGAGAAAGAAATCGCTGCAAGGAGGAAAGA
AGCGGGACGAGAAGAAACAAAACACCACTCCTCCTCATCCTCCACCACAT
CCTCATCCTCCTCCTCCTCCTCATCCTCATCCTCCTCCTCCACCACCTCC
TCCTCTTCCTCCTCTACCTCCTCCTCTTCTGCCTCCTCCGTGTCTTCAAC
TGCGCACCTGCTGGCAGCCGACGCTCTCCCCTGGTCTGTCTTTGCCGCCG
TTCGCATCACCGAGCAAGACACCACAAGCCACATGCGAGTGCTGCTCAAG
ACCGTCTTCCAGGAACTGCACACCGCCATGGGCCCAGAGAAACTGCAGCA
GAGACTGCACGACCCGGAAATGATCAGAGGACCCTTCAAGGGACTCTTCC
CAGCAGACCACCCCAGGAACACCAGATTCGCCGCAAACTTTTACATCTCC
ATCCGAACCCCATACCTCAACAAACCACTGCAAGCCTTCCTCCAACTCGC
GCCACACCTCCTCGCACACCACGAGAAAGAAATCGCTGCAAGGAGGAAAG
AAGCGGGACGAGAAGAAACAAAACACCACTCCTCCTCATCCTCCACCACA
TCCTCATCCTCCTCCTCCTCCTCATCCTCATCCTCCTCCTCCACCACCTC
CTCCTCTTCCTCCTCTACCTCCTCCTCTTCTGCCTCCTCCGTGTCTTCAA
CT
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