mRNA_M-pyrifera_M_contig127158.5474.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127158.5474.1
Unique NamemRNA_M-pyrifera_M_contig127158.5474.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: A0A1V9Z0X4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0X4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.880e-27
Identity = 67/159 (42.14%), Postives = 102/159 (64.15%), Query Frame = 1
Query:    1 LSKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPMLQPTLNTSSKTVRNIMCGRRAALSRDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTKVGDTIREALPE-DLRADVTSAIDDKEGSETKYDTSPAQTLLNIKFISSEESIKASVESI 474
            +SKT+AERSA+EF+ E KP +D+V + PT++ GPMLQPTLN SS+ + N   G    ++    + VDVRDVA AH+  +ETP ASG R++LV+++    ++ D +R+A P  +L AD   A+     + T  DT+ AQ  L + F   EE ++ +V+S+
Sbjct:  167 VSKTVAERSAFEFITEQKPAFDIVSMCPTMIFGPMLQPTLNESSQLIHNFFSGVTKTIANGSRAVVDVRDVAAAHIAGLETPSASG-RYILVSTTTDDFEIRDAVRKADPAANLPADEPPAV---RATRTLVDTTKAQAELGVSFRPLEEMVQGTVDSL 321          
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: A0A1Q9EGK4_SYMMI (Mitochondrial oxaloacetate transport protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EGK4_SYMMI)

HSP 1 Score: 115 bits (288), Expect = 9.080e-27
Identity = 70/172 (40.70%), Postives = 103/172 (59.88%), Query Frame = 1
Query:    1 LSKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPML--QPTLNTSSKTVRNIMCGRRAALSRDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTKVGDTIREALPEDLRADVTSAIDDKEGSETK---------YDTSPAQTLLNIKFISSEESIKASVESILNS 483
            LSK LAE+ AW   +ES  P+DL VL PTL+ GPML  QP +NTS+ ++   M G    +     + VDVRDVA AH+ A    +  G+RFLL+  S  +T V + +R+ALP  L+A+V S +  + G             YD SPA+ LL I+F +++E ++A V+S+L++
Sbjct:  434 LSKLLAEQLAWSMSKESGCPFDLTVLTPTLIWGPMLPGQPHMNTSASSLVGYMDGSLKVIENACKTVVDVRDVAKAHIEAARN-DLGGQRFLLIGGSPHFTAVAEYVRQALPGALQANVPSELSSELGPAVMGPAPPLPVLYDVSPAERLLGIRFKTAQEQVEAMVKSMLDN 604          
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: F2U0U2_SALR5 (Cinnamyl-alcohol dehydrogenase family/CAD family n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U0U2_SALR5)

HSP 1 Score: 114 bits (284), Expect = 2.700e-26
Identity = 65/152 (42.76%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    1 LSKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPMLQPTLNTSSKTVRNIMCGRRAALSRDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTKVGDTIREALPEDLRADVTSAIDDKEGSETKY--DTSPAQTLLNIKFISSEES 450
            +SK LAER+AW+F+EE  P   LVV+NPTL+ GPM QPT+NTS++ + ++  GR+  +   +M+FVDVRDVA AH+ A E  EA G RFLLVA +  W+ +    R ALP +    +   ++ +   +     D + A+T+L ++F S  ES
Sbjct:  156 VSKLLAERAAWKFVEEECPDMRLVVMNPTLIIGPMYQPTMNTSNEFLLDMFNGRKPVIPSGFMTFVDVRDVALAHILAYENKEAKG-RFLLVAGTERWSHLVRDARHALPPEFSRLLPEKVEPESADQRGIVADCTKAKTVLGLEFKSPAES 306          
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: A0A813KTL5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KTL5_POLGL)

HSP 1 Score: 110 bits (276), Expect = 4.850e-26
Identity = 69/170 (40.59%), Postives = 94/170 (55.29%), Query Frame = 1
Query:    1 LSKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPML--QPTLNTSSKTVRNIMCGRRAALSRDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTKVGDTIREALPEDLRADVTSAIDDKEGSETK---------YDTSPAQTLLNIKFISSEESIKASVESIL 477
            LSK LAE+ AWE  +E   PY L VL PTL+ GPML  QP LNTS+  +   + G +  +     S VDVRDVA AH+ A+    A G+RFLL+        V + +R++LP   +  V + +  K G             YD SPA+ LL IKFIS+E+  ++ V S+L
Sbjct:  170 LSKLLAEKLAWELSKEEGCPYQLTVLCPTLIWGPMLPGQPHLNTSANVLTGYVDGSKKEVENACKSVVDVRDVARAHIEAVRRDGAGGQRFLLIGGCPHLMDVANCLRDSLPPGAKERVPTQLSKKLGPTIMGPPPPLPVLYDVSPAEQLLGIKFISAEDQARSMVTSLL 339          
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: A0A812UGN5_9DINO (CCR1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UGN5_9DINO)

HSP 1 Score: 110 bits (275), Expect = 7.190e-26
Identity = 68/172 (39.53%), Postives = 100/172 (58.14%), Query Frame = 1
Query:    1 LSKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPML--QPTLNTSSKTVRNIMCGRRAALSRDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTKVGDTIREALPEDLRADVTSAIDDKEGSETK---------YDTSPAQTLLNIKFISSEESIKASVESILNS 483
            LSK LAE+ AW+  +E   P+ L VL PTL+ GPML  QP +NTS+ ++   M G    +     + VDVRDV+ AH+ A+   E  G+R LL+     + +V + +REALPEDL+A+V   +  + G             YD SPA+ LL  KF S++E ++A V+S+L +
Sbjct:  175 LSKLLAEQLAWDMSKEPGCPFQLTVLIPTLIWGPMLPGQPHMNTSASSLVGYMDGSLKVIENACKTVVDVRDVSRAHIEAVRG-EYGGQRILLIGGCPHFREVAEYVREALPEDLKANVPEELSSELGPTVMGPAPPLPVLYDVSPAERLLGAKFKSAQEQVEAMVQSMLKN 345          
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: A0A7S2VPW8_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VPW8_9DINO)

HSP 1 Score: 110 bits (274), Expect = 1.130e-25
Identity = 67/172 (38.95%), Postives = 101/172 (58.72%), Query Frame = 1
Query:    1 LSKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPML--QPTLNTSSKTVRNIMCGRRAALSRDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTKVGDTIREALPEDLRADVTSAIDDKEGSE---------TKYDTSPAQTLLNIKFISSEESIKASVESILNS 483
            LSK LAER AW+  E+ + P+ LVVL PTL+ GPML  QP LNTS+  +   + G +  +     S VDVRDVA AHV A+   +  G+RFLL+     + +V   IREALP +++A+V +A+  K G             Y T+ A+ +L I+F+  ++ ++  V S+L++
Sbjct:  178 LSKLLAEREAWKLSEQPECPFQLVVLLPTLIWGPMLPGQPHLNTSAHALSGYVDGTKKDIENACKSVVDVRDVARAHVEAVRR-DVGGRRFLLIGDCPHFEQVAKWIREALPSEMQANVPTALSPKLGQAMGGPKPPLPVLYSTAAAEKMLGIQFVKGKDQVETMVGSMLDN 348          
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: A0A5A8CNB0_CAFRO (Epimerase domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNB0_CAFRO)

HSP 1 Score: 109 bits (273), Expect = 1.260e-25
Identity = 62/149 (41.61%), Postives = 85/149 (57.05%), Query Frame = 1
Query:    1 LSKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPMLQPTLNTSSKTVRNIMCGRRAALSRDYMSFVDVRDVADAHVNAMETPEASGK----------RFLLVASSIPWTKVGDTIREALPEDLRADVTSAIDDKEGSETKYDTSPAQTL 417
            LSKT+AER+AW++ E +  P+ +  +NPTLV+GPMLQPTLN SS  +   + G+R  +    MS+VDVRD A AH+ AME   A+G           R+  V  S PW  V   ++  LP DL A V +  D+     T Y+TS  + L
Sbjct:  168 LSKTIAERAAWDWHEANGKPFRMAAINPTLVSGPMLQPTLNESSAILAAFVTGKRDEIPTGCMSWVDVRDTALAHILAMEQESAAGTKEEALTTGKGRYTAVGESAPWRDVALALKAGLPADLAARVPTPSDEVSEKPTDYNTSATKAL 316          
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: V9DKJ3_9EURO (Epimerase domain-containing protein n=4 Tax=Herpotrichiellaceae TaxID=43219 RepID=V9DKJ3_9EURO)

HSP 1 Score: 109 bits (272), Expect = 1.370e-25
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 1
Query:    4 SKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPMLQ-----PTLNTSSKTVRNIMCGRRAALS---RDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTKVGDTIREALPE---DLRADVTSAIDDKEGSETKYDTSPAQTLLNIKFISSEESIKASVESIL 477
            SKT AER+AWEF+E+ KP +D+  +NP LV GP++       ++NTS++ VRN++ GR             +VDVRDVA AHV A+E PEA GKRF + A      ++ + I++  P+    L A++ S   DK     + D S ++ +L +K+ + EES+K +V+S+L
Sbjct:  165 SKTFAERAAWEFVEKEKPNFDIATINPPLVLGPVVHYLNSLDSINTSNERVRNMIQGRTKESGLPPTGVFIWVDVRDVALAHVKALEVPEAGGKRFFVTAGHYSNAEIAEIIKKEFPDLADKLPAEIKS---DKPADVYEVDNSRSKQVLRLKYKTLEESVKDTVKSLL 330          
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: A0A0D2F2M7_9EURO (Epimerase domain-containing protein n=9 Tax=Herpotrichiellaceae TaxID=43219 RepID=A0A0D2F2M7_9EURO)

HSP 1 Score: 109 bits (272), Expect = 1.370e-25
Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1
Query:    4 SKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPMLQ-----PTLNTSSKTVRNIMCGRR---AALSRDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTKVGDTIREALPEDLRADVTSAIDDKEGSET-----KYDTSPAQTLLNIKFISSEESIKASVESIL 477
            SKT AER+AWEF+E+ KP +D+  +NP LV GP++       T+NTS++ VRN++ GR             +VDVRDVA AHV A+E PEA GKRFL  A       +   I++  P     D+   + DK  S+      +YD S ++ +L +K+ S EES+  +V+S+L
Sbjct:  165 SKTFAERAAWEFVEKEKPNFDIATINPPLVLGPVVHYLNSLDTINTSNERVRNMIQGRTKDTGLAPSGVFIWVDVRDVALAHVKALEVPEAGGKRFLTTAGHYSNADIAQIIKQRFP-----DLADKLPDKIESDRPQDCYQYDNSRSKEVLGLKYRSLEESVVDTVKSLL 330          
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Match: A0A425CSV5_9STRA (Epimerase domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CSV5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.770e-25
Identity = 61/158 (38.61%), Postives = 93/158 (58.86%), Query Frame = 1
Query:    1 LSKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPMLQPTLNTSSKTVRNIMCGRRAALSRDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTKVGDTIREALPEDLRADVTSAIDDKEGSETKYDTSPAQTLLNIKFISSEESIKASVESI 474
            LSKT+AER AWEFM+ + P +DLV + PT + GPMLQP LN S+K + + M G    +     + VDVRDVA AH+ A E P+ASG R+LL+ +     ++ D +++A P     + ++  D        YD S A+  L I+F S  + ++ + +S+
Sbjct:  167 LSKTVAEREAWEFMQTTSPHFDLVAMCPTWILGPMLQPALNESNKKIYDYMVGNTPVILNAVKALVDVRDVAMAHIAAFENPQASG-RYLLIGACPTEHEIADAVQQACPSARVPEAST--DSSPAVPLLYDCSKAEQELGIRFRSLTDMVQETCDSL 321          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127158.5474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9Z0X4_9STRA1.880e-2742.14Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1Q9EGK4_SYMMI9.080e-2740.70Mitochondrial oxaloacetate transport protein n=5 T... [more]
F2U0U2_SALR52.700e-2642.76Cinnamyl-alcohol dehydrogenase family/CAD family n... [more]
A0A813KTL5_POLGL4.850e-2640.59Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812UGN5_9DINO7.190e-2639.53CCR1 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A7S2VPW8_9DINO1.130e-2538.95Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A5A8CNB0_CAFRO1.260e-2541.61Epimerase domain-containing protein n=1 Tax=Cafete... [more]
V9DKJ3_9EURO1.370e-2539.05Epimerase domain-containing protein n=4 Tax=Herpot... [more]
A0A0D2F2M7_9EURO1.370e-2539.77Epimerase domain-containing protein n=9 Tax=Herpot... [more]
A0A425CSV5_9STRA1.770e-2538.61Epimerase domain-containing protein n=5 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127158contigM-pyrifera_M_contig127158:1..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue8.1e-24
Seed eggNOG ortholog2903.EOD27372
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dihydrokaempferol 4-reductase activity
EggNOG OGsCOG0451@1,KOG1502@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size507
Cds size507
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.6735709-CDS-M-pyrifera_M_contig127158:0..5071622815785.6735709-CDS-M-pyrifera_M_contig127158:0..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127158 1..507 -
1692277568.5261974-CDS-M-pyrifera_M_contig127158:0..5071692277568.5261974-CDS-M-pyrifera_M_contig127158:0..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127158 1..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127158.5474.1prot_M-pyrifera_M_contig127158.5474.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127158 1..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127158.5474.1

>prot_M-pyrifera_M_contig127158.5474.1 ID=prot_M-pyrifera_M_contig127158.5474.1|Name=mRNA_M-pyrifera_M_contig127158.5474.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
LSKTLAERSAWEFMEESKPPYDLVVLNPTLVTGPMLQPTLNTSSKTVRNI
MCGRRAALSRDYMSFVDVRDVADAHVNAMETPEASGKRFLLVASSIPWTK
VGDTIREALPEDLRADVTSAIDDKEGSETKYDTSPAQTLLNIKFISSEES
IKASVESILNSPHWPLEK*
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mRNA from alignment at M-pyrifera_M_contig127158:1..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127158.5474.1 ID=mRNA_M-pyrifera_M_contig127158.5474.1|Name=mRNA_M-pyrifera_M_contig127158.5474.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig127158:1..507- (Macrocystis pyrifera P11B4 male)
TTGAGCAAGACTCTGGCGGAACGATCCGCATGGGAGTTCATGGAAGAGTC CAAGCCACCGTACGACCTTGTCGTCCTCAACCCAACCCTCGTGACTGGCC CAATGCTTCAACCAACCCTCAACACCTCGAGTAAAACTGTCCGCAACATC ATGTGTGGCCGTCGCGCTGCACTCAGCAGAGACTACATGAGTTTTGTAGA TGTTAGAGATGTTGCAGATGCACATGTCAACGCAATGGAAACACCAGAAG CCAGTGGAAAGCGGTTCCTTCTGGTGGCATCTTCCATTCCTTGGACCAAG GTTGGAGATACAATTCGAGAAGCTCTTCCAGAAGACCTCCGTGCCGATGT TACCTCTGCAATTGACGATAAAGAGGGGTCGGAAACAAAGTACGATACTT CCCCTGCACAAACCCTTCTCAACATCAAATTCATCTCTTCCGAAGAATCT ATCAAAGCGTCTGTCGAATCCATCCTCAATTCCCCACATTGGCCACTGGA GAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127158:1..507-

>mRNA_M-pyrifera_M_contig127158.5474.1 ID=mRNA_M-pyrifera_M_contig127158.5474.1|Name=mRNA_M-pyrifera_M_contig127158.5474.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig127158:1..507- (Macrocystis pyrifera P11B4 male)
TTGAGCAAGACTCTGGCGGAACGATCCGCATGGGAGTTCATGGAAGAGTC
CAAGCCACCGTACGACCTTGTCGTCCTCAACCCAACCCTCGTGACTGGCC
CAATGCTTCAACCAACCCTCAACACCTCGAGTAAAACTGTCCGCAACATC
ATGTGTGGCCGTCGCGCTGCACTCAGCAGAGACTACATGAGTTTTGTAGA
TGTTAGAGATGTTGCAGATGCACATGTCAACGCAATGGAAACACCAGAAG
CCAGTGGAAAGCGGTTCCTTCTGGTGGCATCTTCCATTCCTTGGACCAAG
GTTGGAGATACAATTCGAGAAGCTCTTCCAGAAGACCTCCGTGCCGATGT
TACCTCTGCAATTGACGATAAAGAGGGGTCGGAAACAAAGTACGATACTT
CCCCTGCACAAACCCTTCTCAACATCAAATTCATCTCTTCCGAAGAATCT
ATCAAAGCGTCTGTCGAATCCATCCTCAATTCCCCACATTGGCCACTGGA
GAAGTAGTTGAGCAAGACTCTGGCGGAACGATCCGCATGGGAGTTCATGG
AAGAGTCCAAGCCACCGTACGACCTTGTCGTCCTCAACCCAACCCTCGTG
ACTGGCCCAATGCTTCAACCAACCCTCAACACCTCGAGTAAAACTGTCCG
CAACATCATGTGTGGCCGTCGCGCTGCACTCAGCAGAGACTACATGAGTT
TTGTAGATGTTAGAGATGTTGCAGATGCACATGTCAACGCAATGGAAACA
CCAGAAGCCAGTGGAAAGCGGTTCCTTCTGGTGGCATCTTCCATTCCTTG
GACCAAGGTTGGAGATACAATTCGAGAAGCTCTTCCAGAAGACCTCCGTG
CCGATGTTACCTCTGCAATTGACGATAAAGAGGGGTCGGAAACAAAGTAC
GATACTTCCCCTGCACAAACCCTTCTCAACATCAAATTCATCTCTTCCGA
AGAATCTATCAAAGCGTCTGTCGAATCCATCCTCAATTCCCCACATTGGC
CACTGGAGAAGTAG
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