mRNA_M-pyrifera_M_contig102542.547.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102542.547.1
Unique NamemRNA_M-pyrifera_M_contig102542.547.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102542.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102542contigM-pyrifera_M_contig102542:105..464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.820346-CDS-M-pyrifera_M_contig102542:104..4641622815528.820346-CDS-M-pyrifera_M_contig102542:104..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102542 105..464 -
1692277450.553063-CDS-M-pyrifera_M_contig102542:104..4641692277450.553063-CDS-M-pyrifera_M_contig102542:104..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102542 105..464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102542.547.1prot_M-pyrifera_M_contig102542.547.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102542 105..464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102542.547.1

>prot_M-pyrifera_M_contig102542.547.1 ID=prot_M-pyrifera_M_contig102542.547.1|Name=mRNA_M-pyrifera_M_contig102542.547.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
QLRHLVRPIRSDSGEELLVMVHQKEVFAVRPNTQPEGRRCAKISLVTADF
DPICLDAKHGFLALGGSEGQLHVYSLDNGCTAVVELLKTEVCNTAVNSLQ
VCSLEDRSIALVMTSNDHEV
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mRNA from alignment at M-pyrifera_M_contig102542:105..464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102542.547.1 ID=mRNA_M-pyrifera_M_contig102542.547.1|Name=mRNA_M-pyrifera_M_contig102542.547.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig102542:105..464- (Macrocystis pyrifera P11B4 male)
CAACTGCGCCATTTGGTACGTCCTATTCGGTCAGACTCTGGTGAGGAGCT
GCTGGTGATGGTGCACCAGAAGGAGGTCTTTGCCGTGAGGCCAAACACCC
AGCCTGAAGGCAGACGATGCGCCAAGATCTCTCTCGTCACGGCGGACTTT
GATCCCATCTGCTTGGATGCGAAGCACGGCTTCTTGGCGCTGGGAGGCAG
CGAAGGCCAGCTCCACGTCTACTCTCTCGATAATGGATGTACCGCGGTTG
TAGAGCTACTGAAGACTGAGGTCTGCAACACGGCAGTCAATTCCCTTCAG
GTCTGCAGTCTTGAAGATCGGAGCATTGCACTCGTCATGACGTCAAACGA
TCACGAGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102542:105..464-

>mRNA_M-pyrifera_M_contig102542.547.1 ID=mRNA_M-pyrifera_M_contig102542.547.1|Name=mRNA_M-pyrifera_M_contig102542.547.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig102542:105..464- (Macrocystis pyrifera P11B4 male)
CAACTGCGCCATTTGGTACGTCCTATTCGGTCAGACTCTGGTGAGGAGCT
GCTGGTGATGGTGCACCAGAAGGAGGTCTTTGCCGTGAGGCCAAACACCC
AGCCTGAAGGCAGACGATGCGCCAAGATCTCTCTCGTCACGGCGGACTTT
GATCCCATCTGCTTGGATGCGAAGCACGGCTTCTTGGCGCTGGGAGGCAG
CGAAGGCCAGCTCCACGTCTACTCTCTCGATAATGGATGTACCGCGGTTG
TAGAGCTACTGAAGACTGAGGTCTGCAACACGGCAGTCAATTCCCTTCAG
GTCTGCAGTCTTGAAGATCGGAGCATTGCACTCGTCATGACGTCAAACGA
TCACGAGGTTCAACTGCGCCATTTGGTACGTCCTATTCGGTCAGACTCTG
GTGAGGAGCTGCTGGTGATGGTGCACCAGAAGGAGGTCTTTGCCGTGAGG
CCAAACACCCAGCCTGAAGGCAGACGATGCGCCAAGATCTCTCTCGTCAC
GGCGGACTTTGATCCCATCTGCTTGGATGCGAAGCACGGCTTCTTGGCGC
TGGGAGGCAGCGAAGGCCAGCTCCACGTCTACTCTCTCGATAATGGATGT
ACCGCGGTTGTAGAGCTACTGAAGACTGAGGTCTGCAACACGGCAGTCAA
TTCCCTTCAGGTCTGCAGTCTTGAAGATCGGAGCATTGCACTCGTCATGA
CGTCAAACGATCACGAGGTT
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