mRNA_M-pyrifera_M_contig127112.5466.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127112.5466.1
Unique NamemRNA_M-pyrifera_M_contig127112.5466.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: A0A5A8CFS1_CAFRO (Protein kinase domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CFS1_CAFRO)

HSP 1 Score: 62.4 bits (150), Expect = 4.170e-10
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    1 RAKSGVIPMPAPTWTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRWF 144
            R   G      P WTHVSG AR+LV RMLS++P+SRPTA +CL+H WF
Sbjct:  352 RILQGQFRFDPPVWTHVSGLARDLVVRMLSVEPASRPTAVECLRHPWF 399          
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: A0A812LD15_SYMPI (CmkA protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812LD15_SYMPI)

HSP 1 Score: 55.5 bits (132), Expect = 2.430e-8
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query:   40 WTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRW 141
            W HVSGP RELV ++LSL P+ R TAA+CLQH W
Sbjct:   46 WCHVSGPCRELVAQLLSLQPAKRGTAAECLQHAW 79          
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: A0A6P6Y775_DERPT (calcium-dependent protein kinase 2-like n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6Y775_DERPT)

HSP 1 Score: 55.5 bits (132), Expect = 1.160e-7
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 RAKSGVIPMPAPTWTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRW 141
            + K GV  M   +W  VS PA++LVRR+L++DPS R TAA+ L+H+W
Sbjct:  174 KVKKGVYSMNGRSWKKVSAPAKDLVRRLLTMDPSKRITAAEALKHQW 220          
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: A0A4S2L2H3_9HYME (Guanylate kinase n=1 Tax=Temnothorax longispinosus TaxID=300112 RepID=A0A4S2L2H3_9HYME)

HSP 1 Score: 53.5 bits (127), Expect = 5.590e-7
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 RAKSGVIPMPAPTWTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRW 141
            R  SG I + +  W H+S  A+ELV+RML +DP+ RPTAA  L+H W
Sbjct:  635 RIGSGYIDVESGIWCHISNEAKELVKRMLHVDPTRRPTAAMILKHPW 681          
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: E9IK17_SOLIN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Solenopsis invicta TaxID=13686 RepID=E9IK17_SOLIN)

HSP 1 Score: 51.2 bits (121), Expect = 1.000e-6
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    1 RAKSGVIPMPAPTWTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRW 141
            R  SG I + +  W H+S   +ELV+RML LDP+ RPTAA  L++ W
Sbjct:   60 RIGSGYIDVESGIWCHISSEVKELVKRMLHLDPTRRPTAAMILKYSW 106          
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: A0A2H3EX90_ARMGA (Pkinase-domain-containing protein n=3 Tax=Physalacriaceae TaxID=862241 RepID=A0A2H3EX90_ARMGA)

HSP 1 Score: 52.4 bits (124), Expect = 1.420e-6
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   40 WTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRW 141
            W +VS  AR+ +R  L++DPS+RPTAAQCL+H+W
Sbjct:  239 WANVSDTARDFIRDCLTIDPSNRPTAAQCLEHKW 272          
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: A0A7S1T9B6_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T9B6_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    7 KSGVIPMPAPTWTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRW 141
            K GV  +  P W  VS  A++LVRR+L +DPS R TA+Q L H+W
Sbjct:  401 KKGVFSLDDPVWDSVSSEAKDLVRRLLEVDPSKRLTASQVLNHKW 445          
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: A0A284RMP9_ARMOS (Related to calmodulin-dependent protein kinase type 1 n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284RMP9_ARMOS)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   40 WTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRW 141
            W +VS  AR+ +R  L++DPS+RPTAAQCL+H+W
Sbjct:  239 WANVSDTARDFIRDCLTIDPSNRPTAAQCLEHKW 272          
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: A0A2G5VJY5_9PELO (Ribosomal protein S6 kinase n=2 Tax=Caenorhabditis nigoni TaxID=1611254 RepID=A0A2G5VJY5_9PELO)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    1 RAKSGVIPMPAPTWTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRWF 144
            R   G I M  P W  +S  A++LV++ML +DP+ R TA Q LQH+WF
Sbjct:  615 RVGDGKITMTQPVWDTISEDAKDLVKKMLDVDPNRRVTAKQALQHKWF 662          
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Match: UPI0008F9DB2E (peripheral plasma membrane protein CASK isoform X1 n=7 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9DB2E)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   13 GVIPMPAPTWTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRW 141
            G I   +P W  VS PA++L+R+ML+LDP++RPT    L HRW
Sbjct:  256 GKINFDSPQWQFVSEPAKDLIRKMLTLDPNTRPTIQDVLSHRW 298          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127112.5466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CFS1_CAFRO4.170e-1058.33Protein kinase domain-containing protein n=4 Tax=C... [more]
A0A812LD15_SYMPI2.430e-867.65CmkA protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A6P6Y775_DERPT1.160e-751.06calcium-dependent protein kinase 2-like n=1 Tax=De... [more]
A0A4S2L2H3_9HYME5.590e-751.06Guanylate kinase n=1 Tax=Temnothorax longispinosus... [more]
E9IK17_SOLIN1.000e-648.94Protein kinase domain-containing protein (Fragment... [more]
A0A2H3EX90_ARMGA1.420e-658.82Pkinase-domain-containing protein n=3 Tax=Physalac... [more]
A0A7S1T9B6_9CHLO1.430e-651.11Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A284RMP9_ARMOS1.430e-658.82Related to calmodulin-dependent protein kinase typ... [more]
A0A2G5VJY5_9PELO1.430e-647.92Ribosomal protein S6 kinase n=2 Tax=Caenorhabditis... [more]
UPI0008F9DB2E1.430e-651.16peripheral plasma membrane protein CASK isoform X1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127112contigM-pyrifera_M_contig127112:280..423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.3646524-CDS-M-pyrifera_M_contig127112:279..3991622815785.3646524-CDS-M-pyrifera_M_contig127112:279..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127112 280..399 -
1692277568.3767543-CDS-M-pyrifera_M_contig127112:279..3991692277568.3767543-CDS-M-pyrifera_M_contig127112:279..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127112 280..399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.376971-UTR-M-pyrifera_M_contig127112:399..4231622815785.376971-UTR-M-pyrifera_M_contig127112:399..423Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127112 400..423 -
1692277568.3909314-UTR-M-pyrifera_M_contig127112:399..4231692277568.3909314-UTR-M-pyrifera_M_contig127112:399..423Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127112 400..423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127112.5466.1prot_M-pyrifera_M_contig127112.5466.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127112 280..399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127112.5466.1

>prot_M-pyrifera_M_contig127112.5466.1 ID=prot_M-pyrifera_M_contig127112.5466.1|Name=mRNA_M-pyrifera_M_contig127112.5466.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
MPAPTWTHVSGPARELVRRMLSLDPSSRPTAAQCLQHRWF
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mRNA from alignment at M-pyrifera_M_contig127112:280..423-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127112.5466.1 ID=mRNA_M-pyrifera_M_contig127112.5466.1|Name=mRNA_M-pyrifera_M_contig127112.5466.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig127112:280..423- (Macrocystis pyrifera P11B4 male)
AGGGCCAAGAGTGGGGTCATTCCTATGCCAGCTCCGACTTGGACGCATGT GAGTGGACCCGCGAGAGAATTGGTGCGACGGATGCTCTCTCTCGACCCTT CCTCCCGCCCCACTGCCGCCCAGTGCCTCCAACACCGCTGGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127112:280..423-

>mRNA_M-pyrifera_M_contig127112.5466.1 ID=mRNA_M-pyrifera_M_contig127112.5466.1|Name=mRNA_M-pyrifera_M_contig127112.5466.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig127112:280..423- (Macrocystis pyrifera P11B4 male)
ATGCCAGCTCCGACTTGGACGCATGTGAGTGGACCCGCGAGAGAATTGGT
GCGACGGATGCTCTCTCTCGACCCTTCCTCCCGCCCCACTGCCGCCCAGT
GCCTCCAACACCGCTGGTTTATGCCAGCTCCGACTTGGACGCATGTGAGT
GGACCCGCGAGAGAATTGGTGCGACGGATGCTCTCTCTCGACCCTTCCTC
CCGCCCCACTGCCGCCCAGTGCCTCCAACACCGCTGGTTT
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