mRNA_M-pyrifera_M_contig127102.5462.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127102.5462.1
Unique NamemRNA_M-pyrifera_M_contig127102.5462.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: A0A8J8AZP1_9GAMM (Bax inhibitor-1/YccA family protein n=1 Tax=Coralloluteibacterium stylophorae TaxID=1776034 RepID=A0A8J8AZP1_9GAMM)

HSP 1 Score: 135 bits (341), Expect = 2.600e-37
Identity = 65/121 (53.72%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    1 LTMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLAR 363
            LT G+   +L+AY TG++R T++FR  ++AA GGI L Y++NIV+ FFG+ +PF+H GG +G+   + +VVIA L+L LDFD ++R V+ GA K  EWY AF LLV+LVWLY+E+LRLLA+
Sbjct:  126 LTFGVLAAMLIAYRTGVIRATEKFRMGVVAATGGIALLYLVNIVMHFFGSGIPFIHEGGAIGIGFSLVVVVIAALNLVLDFDTIERGVEAGAPKYMEWYGAFSLLVTLVWLYLELLRLLAK 246          
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: A0A2E7M828_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7M828_9DELT)

HSP 1 Score: 132 bits (332), Expect = 6.010e-36
Identity = 65/121 (53.72%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 LTMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLAR 363
            LT G F  +L+AY +G+++ ++ FR  + AA GGIML Y+  +VL FFG  +PF+H  GP+G+   +F+VVIA L+L LDFD ++  V+ GA K  EWY AFGLLV+LVWLYIE LRLLA+
Sbjct:  124 LTFGTFGALLLAYTSGMIKPSENFRLGLFAATGGIMLLYLATMVLGFFGVSIPFIHGSGPIGIGFSLFVVVIAALNLVLDFDFIENGVEAGAPKYMEWYAAFGLLVTLVWLYIEYLRLLAK 244          
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: A0A847Q662_9BACT (Bax inhibitor-1/YccA family protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A847Q662_9BACT)

HSP 1 Score: 131 bits (330), Expect = 1.030e-35
Identity = 61/120 (50.83%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    1 LTMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLA 360
            +T G+   +LV + +GI++VT +FR+ +I A GGI L Y+++ +L FFG ++P+LHSGGP+G+ I +FI++IA L+L LDF+ +Q   + GA K  EW+ AFGL+V+LVWLY+EVLRLL+
Sbjct:  120 ITFGIMAVMLVLFRSGIIKVTNKFRSGIIIATGGIALVYLVSFILGFFGIQIPYLHSGGPIGIGISIFIIIIAALNLILDFNFIQESCERGAPKEAEWFAAFGLMVTLVWLYLEVLRLLS 239          
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: A0A4V2B929_9PROT (Bax inhibitor-1/YccA family protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4V2B929_9PROT)

HSP 1 Score: 127 bits (319), Expect = 3.140e-35
Identity = 61/120 (50.83%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    4 TMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLAR 363
            T G+F  +LVAY +G++R T+ F+  ++AA GGI L Y++++ L+FFG  +P+LH  G VG+ I +F+VVIA L+L +DFD +++  + GA K  EWY AFGLLV+LVWLY+EVLRL+++
Sbjct:   23 TGGVFVAMLVAYQSGLIRATENFKLGVVAATGGIALVYMIDLGLNFFGIRMPYLHENGVVGIGISLFVVVIAALNLVMDFDFIEQGAERGAPKYMEWYAAFGLLVTLVWLYLEVLRLISK 142          
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: A0A2D5PFN5_9GAMM (Uncharacterized protein n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2D5PFN5_9GAMM)

HSP 1 Score: 130 bits (327), Expect = 3.300e-35
Identity = 63/121 (52.07%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 LTMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLAR 363
            LT G   ++LVAY +G+++VTQ FR  ++AA GGI L Y+ N V+ FFG  +PF+H  G +G+   +F+VVIA L+L LDFD +++ V+ G  K  EWY AFGL+V+L+WLYIE+LRLLA+
Sbjct:  125 LTFGTMLSLLVAYKSGVIKVTQNFRLGVVAATGGIALVYIANFVMGFFGIHMPFIHESGTMGILFSLFVVVIAALNLVLDFDFIEQGVESGCAKYMEWYGAFGLVVTLLWLYIEILRLLAK 245          
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: A0A2V9AD49_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9AD49_9BACT)

HSP 1 Score: 129 bits (325), Expect = 5.670e-35
Identity = 63/121 (52.07%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 LTMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLAR 363
            LT G    +L+AY +G++R T++F+  + AA GGIML Y+++IVL FF   +PF+H G P+G+A  +F+VVIA L+L LDFD ++  V+ GA K  EWY AFGL+V+L+WLY+E+LRLLA+
Sbjct:  119 LTFGTLLAMLLAYKSGVIRATEKFKIGVFAATGGIMLLYLVDIVLHFFNRPIPFIHEGTPMGVAFSLFVVVIAALNLVLDFDLIETGVNNGAPKYMEWYGAFGLMVTLIWLYLEILRLLAK 239          
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: A0A2H0LXK3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_42_13 TaxID=1974746 RepID=A0A2H0LXK3_9BACT)

HSP 1 Score: 129 bits (323), Expect = 1.050e-34
Identity = 57/121 (47.11%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 LTMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLAR 363
            LT G    +L+AY +G+++ T+ F+  ++AA GGI L Y+ ++++ FFGA +PF+H  GP+G+   VF+V+IA L+L LDFD +++  + GA K  EWY AFGL+++L+WLY+E+LRLLA+
Sbjct:  116 LTFGTLFCLLMAYRSGLIKATENFKLGVVAATGGIALLYIASMIMGFFGARVPFIHESGPIGIGFSVFVVIIAALNLVLDFDFIEKGAEAGAPKYMEWYGAFGLIITLIWLYLEILRLLAK 236          
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: L5N6E0_9BACI (Uncharacterized protein n=2 Tax=Bacillaceae TaxID=186817 RepID=L5N6E0_9BACI)

HSP 1 Score: 129 bits (323), Expect = 1.050e-34
Identity = 62/121 (51.24%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 LTMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLAR 363
            LT  +   +L  Y T I++VT+ FR  +++A  GI++ Y++N +++FFGA +P+LHS GPVG+ I +FIV IA L+L LDFD +++ V+ GA K  EWY AFGL+V+LVWLYIE+LRLL +
Sbjct:  117 LTFAVMAALLFLYATRIIKVTRNFRLMVVSATFGILIVYLINFIMNFFGASVPYLHSSGPVGIGISLFIVAIAALNLVLDFDFIEQGVNRGAPKHMEWYGAFGLIVTLVWLYIEILRLLQK 237          
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: A0A3A0DTJ1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DTJ1_9BACT)

HSP 1 Score: 129 bits (323), Expect = 1.380e-34
Identity = 66/126 (52.38%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 LTMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLA---RRD 369
            LT G   ++LVAY  G+VR T++FR  ++AAIGGI L Y+  IVL  FG+++PF+H GGP+G+   V ++++A LSL LDFD ++R  + GA K  EWY A+ LLV+LVWLYIE L+LL    RRD
Sbjct:  126 LTFGTLASMLVAYRAGLVRATEKFRFVIVAAIGGICLVYLATIVLRMFGSDIPFIHGGGPIGIGFSVVVLIVAALSLVLDFDLIERGANEGAAKYMEWYGAYALLVTLVWLYIEFLKLLMKLQRRD 251          
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Match: UPI001CFE49D5 (Bax inhibitor-1/YccA family protein n=1 Tax=Halobacillus litoralis TaxID=45668 RepID=UPI001CFE49D5)

HSP 1 Score: 128 bits (321), Expect = 2.100e-34
Identity = 63/121 (52.07%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 LTMGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAELPFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAFGLLVSLVWLYIEVLRLLAR 363
            LT+ +   +L+ Y T +++VT+ FR  +++A  GI L Y++NIVL+ FG ++P+LHS GPVG+ I +FIV IA L+L LDFD +++ V+ GA K  EWY AFGL+V+LVWLYIE+LRLL +
Sbjct:  117 LTLAVMGALLLLYATRVIKVTRNFRLMIVSATLGIFLVYMVNIVLNLFGMQVPYLHSSGPVGIGISLFIVAIAALNLVLDFDFIEQGVNRGAPKHMEWYGAFGLIVTLVWLYIEILRLLQK 237          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127102.5462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J8AZP1_9GAMM2.600e-3753.72Bax inhibitor-1/YccA family protein n=1 Tax=Corall... [more]
A0A2E7M828_9DELT6.010e-3653.72Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A847Q662_9BACT1.030e-3550.83Bax inhibitor-1/YccA family protein n=2 Tax=Bacter... [more]
A0A4V2B929_9PROT3.140e-3550.83Bax inhibitor-1/YccA family protein (Fragment) n=1... [more]
A0A2D5PFN5_9GAMM3.300e-3552.07Uncharacterized protein n=1 Tax=Oceanospirillaceae... [more]
A0A2V9AD49_9BACT5.670e-3552.07Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2H0LXK3_9BACT1.050e-3447.11Uncharacterized protein n=1 Tax=Candidatus Omnitro... [more]
L5N6E0_9BACI1.050e-3451.24Uncharacterized protein n=2 Tax=Bacillaceae TaxID=... [more]
A0A3A0DTJ1_9BACT1.380e-3452.38Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI001CFE49D52.100e-3452.07Bax inhibitor-1/YccA family protein n=1 Tax=Haloba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127102contigM-pyrifera_M_contig127102:3..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score129.0
Seed ortholog evalue1.5e-27
Seed eggNOG ortholog1246484.D479_11091
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Inhibitor of apoptosis-promoting Bax1
EggNOG OGs1TQ9Z@1239,3NEKV@45667,4HEPV@91061,COG4760@1,COG4760@2
COG Functional cat.S
Best tax levelHalobacillus
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size366
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.1925092-UTR-M-pyrifera_M_contig127102:2..81622815785.1925092-UTR-M-pyrifera_M_contig127102:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127102 3..8 +
1692277568.2891436-UTR-M-pyrifera_M_contig127102:2..81692277568.2891436-UTR-M-pyrifera_M_contig127102:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127102 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.2067006-CDS-M-pyrifera_M_contig127102:8..3741622815785.2067006-CDS-M-pyrifera_M_contig127102:8..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127102 9..374 +
1692277568.2996635-CDS-M-pyrifera_M_contig127102:8..3741692277568.2996635-CDS-M-pyrifera_M_contig127102:8..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127102 9..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127102.5462.1prot_M-pyrifera_M_contig127102.5462.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127102 9..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127102.5462.1

>prot_M-pyrifera_M_contig127102.5462.1 ID=prot_M-pyrifera_M_contig127102.5462.1|Name=mRNA_M-pyrifera_M_contig127102.5462.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MGLFTTILVAYGTGIVRVTQRFRTFMIAAIGGIMLAYVMNIVLSFFGAEL
PFLHSGGPVGLAIQVFIVVIAVLSLALDFDNVQRMVDGGADKRFEWYLAF
GLLVSLVWLYIEVLRLLARRD*
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mRNA from alignment at M-pyrifera_M_contig127102:3..374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127102.5462.1 ID=mRNA_M-pyrifera_M_contig127102.5462.1|Name=mRNA_M-pyrifera_M_contig127102.5462.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig127102:3..374+ (Macrocystis pyrifera P11B4 male)
CTGACGATGGGCCTGTTCACGACGATCCTGGTCGCCTACGGCACCGGCAT CGTGCGCGTGACCCAGCGCTTCCGCACGTTCATGATCGCGGCGATCGGCG GCATCATGCTGGCGTACGTGATGAACATCGTGCTGAGCTTCTTCGGCGCG GAACTGCCGTTCCTGCACAGCGGCGGCCCGGTGGGGCTAGCGATCCAGGT CTTCATCGTCGTGATCGCGGTGCTGAGCCTCGCGCTCGACTTCGACAACG TACAGCGCATGGTCGACGGCGGCGCGGACAAGCGCTTCGAGTGGTACCTG GCCTTCGGCCTCCTGGTCAGCCTGGTCTGGCTCTACATCGAGGTCCTGCG CCTGCTCGCCCGCCGCGACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127102:3..374+

>mRNA_M-pyrifera_M_contig127102.5462.1 ID=mRNA_M-pyrifera_M_contig127102.5462.1|Name=mRNA_M-pyrifera_M_contig127102.5462.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig127102:3..374+ (Macrocystis pyrifera P11B4 male)
ATGGGCCTGTTCACGACGATCCTGGTCGCCTACGGCACCGGCATCGTGCG
CGTGACCCAGCGCTTCCGCACGTTCATGATCGCGGCGATCGGCGGCATCA
TGCTGGCGTACGTGATGAACATCGTGCTGAGCTTCTTCGGCGCGGAACTG
CCGTTCCTGCACAGCGGCGGCCCGGTGGGGCTAGCGATCCAGGTCTTCAT
CGTCGTGATCGCGGTGCTGAGCCTCGCGCTCGACTTCGACAACGTACAGC
GCATGGTCGACGGCGGCGCGGACAAGCGCTTCGAGTGGTACCTGGCCTTC
GGCCTCCTGGTCAGCCTGGTCTGGCTCTACATCGAGGTCCTGCGCCTGCT
CGCCCGCCGCGACTAGATGGGCCTGTTCACGACGATCCTGGTCGCCTACG
GCACCGGCATCGTGCGCGTGACCCAGCGCTTCCGCACGTTCATGATCGCG
GCGATCGGCGGCATCATGCTGGCGTACGTGATGAACATCGTGCTGAGCTT
CTTCGGCGCGGAACTGCCGTTCCTGCACAGCGGCGGCCCGGTGGGGCTAG
CGATCCAGGTCTTCATCGTCGTGATCGCGGTGCTGAGCCTCGCGCTCGAC
TTCGACAACGTACAGCGCATGGTCGACGGCGGCGCGGACAAGCGCTTCGA
GTGGTACCTGGCCTTCGGCCTCCTGGTCAGCCTGGTCTGGCTCTACATCG
AGGTCCTGCGCCTGCTCGCCCGCCGCGACTAG
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