mRNA_M-pyrifera_M_contig127095.5454.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: A0A7L1HZV4_9CHAR (LPXN protein (Fragment) n=3 Tax=Charadriiformes TaxID=8906 RepID=A0A7L1HZV4_9CHAR) HSP 1 Score: 81.3 bits (199), Expect = 9.400e-16 Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1
Query: 13 CAECKKPVGNDCLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPVIDDFVDVMDNLYHVACFTCAKCSATLTTG-FFKRQGQAVCK 336
CA C P+ L + WH F C C + F +D + E +G P C+ D+ A KC C+ PV D+++ + ++H ACF CA+C + T+G FF+ +G+ C+
Sbjct: 172 CAYCASPIREKVLTALDQTWHPEHFFCVHCGKVFGDDGF-HEWSGKPYCRQDFLAMFAPKCQGCERPVTDNYLSALQGVWHPACFVCAECLNSFTSGSFFELEGRPYCE 279
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: UPI000B8F68B1 (actin-binding LIM protein 1 isoform X1 n=2 Tax=Folsomia candida TaxID=158441 RepID=UPI000B8F68B1) HSP 1 Score: 79.0 bits (193), Expect = 1.150e-14 Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 1
Query: 13 CAECKKPVGNDCLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPVIDDFVDVMDNLYHVACFTCAKCSATLTTGFFKRQG--QAVCKACKNL 351
C CKK + LR+ K +H+ACFKC +CA + + + G C +DY + +C C V + V + N YH ACFTCA+C TG + +C+ C N+
Sbjct: 102 CQACKKKCSGEVLRVQDKYFHIACFKCKVCASSLAQGGFFFH-EGEYYCTSDYQQRWGTQCGACGRYVEGEVVTALGNTYHQACFTCARCRKPFPTGAKVTVAGREILCQRCVNI 215
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: A0A670IG49_PODMU (Uncharacterized protein n=1 Tax=Podarcis muralis TaxID=64176 RepID=A0A670IG49_PODMU) HSP 1 Score: 74.7 bits (182), Expect = 2.650e-13 Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 1
Query: 13 CAECKKPVGND-CLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPVI-DDFV-DVMDNLYHVACFTCAKCSATLTTG--FFKRQGQAVCKA 339
CA C P+ + LR+ + WH C KC+ C QA Y N CK DY+K KC+ C + V +F+ V++N+YHV CF+C +C L G F ++GQ +C++
Sbjct: 35 CAGCNTPISDRFLLRVNERSWHEGCLKCAACLQALSGTCYCR--NRQLYCKHDYEKLFQTKCSGCLKAVAPSEFIMRVLENVYHVHCFSCCECERRLQRGDEFVLKEGQLLCRS 146
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: A0A670IG57_PODMU (Uncharacterized protein n=1 Tax=Podarcis muralis TaxID=64176 RepID=A0A670IG57_PODMU) HSP 1 Score: 74.7 bits (182), Expect = 2.650e-13 Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 1
Query: 13 CAECKKPVGND-CLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPVI-DDFV-DVMDNLYHVACFTCAKCSATLTTG--FFKRQGQAVCKA 339
CA C P+ + LR+ + WH C KC+ C QA Y N CK DY+K KC+ C + V +F+ V++N+YHV CF+C +C L G F ++GQ +C++
Sbjct: 49 CAGCNTPISDRFLLRVNERSWHEGCLKCAACLQALSGTCYCR--NRQLYCKHDYEKLFQTKCSGCLKAVAPSEFIMRVLENVYHVHCFSCCECERRLQRGDEFVLKEGQLLCRS 160
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: A0A8D2JDN1_VARKO (Uncharacterized protein n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2JDN1_VARKO) HSP 1 Score: 72.4 bits (176), Expect = 5.770e-13 Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 13 CAECKKPVGND-CLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPVI-DDFV-DVMDNLYHVACFTCAKCSATLTTG--FFKRQGQAVCKA 339
CA C P+ + LR+ + WH C KC+ C Q Y N CK DY+K KC+ C + V +F+ V++N+YHV CF+C +C L G F ++GQ +C++
Sbjct: 42 CAGCNTPISDRFLLRVNERSWHEGCVKCAACLQPLSGTCYCR--NRQLYCKHDYEKLFQTKCSGCLKAVAPSEFIMRVLENVYHVHCFSCCECERRLQRGDEFVLKEGQLLCRS 153
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: A0A6I9Y2J0_9SAUR (LIM/homeobox protein LMX-1.2-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9Y2J0_9SAUR) HSP 1 Score: 72.4 bits (176), Expect = 6.950e-13 Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 13 CAECKKPVGND-CLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPVI-DDFV-DVMDNLYHVACFTCAKCSATLTTG--FFKRQGQAVCKA 339
CA C P+ + LR+ + WH C KC+ C Q Y N CK DY+K KC+ C + V +F+ V++N+YHV CF+C +C L G F ++GQ +C++
Sbjct: 29 CAGCNTPISDRFLLRVNERSWHEGCVKCAACLQPLSGTCYCR--NRQLYCKHDYEKLFQTKCSGCLKAVAPSEFIMRVLENVYHVHCFSCCECERRLQRGDEFVLKEGQLLCRS 140
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: UPI0011C432A4 (LIM homeobox transcription factor 1-beta-like n=1 Tax=Calypte anna TaxID=9244 RepID=UPI0011C432A4) HSP 1 Score: 73.6 bits (179), Expect = 6.970e-13 Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 13 CAECKKPVGND-CLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPVIDD--FVDVMDNLYHVACFTCAKCSATLTTG--FFKRQGQAVCKA 339
CA C P+ + LR+ WH C KC+IC Q+ Y N CK DY+K KC+ C + + + V++N+YHV CF+C +C +L G F ++GQ +C++
Sbjct: 29 CAGCDSPISDRFLLRVNECSWHEGCVKCTICLQSLTGSCYWR--NRQLYCKHDYEKLFQTKCSSCLKTITPSELIMKVLENVYHVHCFSCCECERSLQPGDEFVLKEGQLLCRS 140
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: A0A6J0J7B4_9PASS (LIM homeobox transcription factor 1-alpha-like n=7 Tax=Passeriformes TaxID=9126 RepID=A0A6J0J7B4_9PASS) HSP 1 Score: 73.2 bits (178), Expect = 8.830e-13 Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 1
Query: 4 GSECAECKKPVGND-CLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPV--IDDFVDVMDNLYHVACFTCAKCSATLTTG--FFKRQGQAVCKA 339
G CA C + + LR+ + WH C KCS+C Q Y + CK DYDK KC+ C + + + + V++N+YHV CF+C +C L G F ++GQ +C++
Sbjct: 2 GEVCAGCDSRISDRFLLRVNERSWHEGCVKCSVCLQGLSGSCYSRDRR--LYCKHDYDKLFQTKCSSCLKAIGPSELIMRVLENVYHVQCFSCCECERRLQRGDEFVLKEGQLLCRS 116
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: A0A817A8F8_9BILA (Hypothetical protein n=8 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A817A8F8_9BILA) HSP 1 Score: 72.8 bits (177), Expect = 1.660e-12 Identity = 38/118 (32.20%), Postives = 58/118 (49.15%), Query Frame = 1
Query: 7 SECAECKKPVGNDCLRLFGK--QWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPVIDDFVDVMDNLY---HVACFTCAKCSATLTTG---FFKRQGQAVCK 336
S C C P+ + L +WH+ C +CS C Q DE + ++G P+CK+DY + A KCA+CQE + + Y H CF C C L +G + ++Q Q +C+
Sbjct: 33 SICTGCNCPIYDRYLLKVAPDLEWHIQCLRCSECGQYLDETATCFVLDGKPLCKSDYIRLFASKCAKCQESFSKNEFYIRTAFYRRYHPDCFRCNHCDRLLVSGDEYYLRKQNQILCQ 150
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Match: A0A670Z1M3_PSETE (Uncharacterized protein n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670Z1M3_PSETE) HSP 1 Score: 72.4 bits (176), Expect = 1.770e-12 Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 13 CAECKKPVGND-CLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNPVCKADYDKAQAKKCARCQEPVI-DDFV-DVMDNLYHVACFTCAKCSATLTTG--FFKRQGQAVCKA 339
CA C P+ + LR+ + WH C KC+ C Q Y N CK DY+K KC+ C + V +F+ V++N+YHV CF+C +C L G F ++GQ +C++
Sbjct: 49 CAGCNTPISDRFLLRVNERSWHEGCVKCAACLQPLSGTCYCR--NRQLYCKHDYEKLFQTKCSGCLKAVAPSEFIMRVLENVYHVHCFSCCECERRLQRGDEFVLKEGQLLCRS 160 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127095.5454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig127095.5454.1 >prot_M-pyrifera_M_contig127095.5454.1 ID=prot_M-pyrifera_M_contig127095.5454.1|Name=mRNA_M-pyrifera_M_contig127095.5454.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp AGSECAECKKPVGNDCLRLFGKQWHLACFKCSICAQAFDEDSYVLEINGNback to top mRNA from alignment at M-pyrifera_M_contig127095:135..497+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig127095.5454.1 ID=mRNA_M-pyrifera_M_contig127095.5454.1|Name=mRNA_M-pyrifera_M_contig127095.5454.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig127095:135..497+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig127095:135..497+ >mRNA_M-pyrifera_M_contig127095.5454.1 ID=mRNA_M-pyrifera_M_contig127095.5454.1|Name=mRNA_M-pyrifera_M_contig127095.5454.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig127095:135..497+ (Macrocystis pyrifera P11B4 male)back to top |