mRNA_M-pyrifera_M_contig102535.545.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102535.545.1
Unique NamemRNA_M-pyrifera_M_contig102535.545.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: A0A6P3VMR1_CLUHA (Thioredoxin n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3VMR1_CLUHA)

HSP 1 Score: 107 bits (267), Expect = 1.350e-28
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 FHAVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELVQQHK 237
            F A WCGPC++IAPF   LSEKY DV F+KVDVD+  DVAQE D+  MPTF FYK G+K+ +  G+ +E+LEE+V +HK
Sbjct:   27 FTATWCGPCQSIAPFFKSLSEKYKDVVFLKVDVDDAQDVAQECDIKCMPTFHFYKNGKKVDDFSGSNREKLEEMVTKHK 105          
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: A0A0L0FHJ9_9EUKA (Thioredoxin n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FHJ9_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 2.280e-28
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 FHAVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELVQQH 234
            F AVWCGPCK IAPF+ EL  K+ DV F+KVDVDEL ++A E  +TAMPTF FY+ G+K+AE+ GA K +LE+L+  H
Sbjct:   25 FFAVWCGPCKMIAPFLEELDAKFADVDFIKVDVDELEELAGECGITAMPTFQFYRDGKKVAEVKGANKAKLEDLISAH 102          
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: UPI001C08D9DE (thioredoxin-like n=2 Tax=Alosa TaxID=34772 RepID=UPI001C08D9DE)

HSP 1 Score: 105 bits (263), Expect = 5.480e-28
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 FHAVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELV 225
            F A WCGPC++IAPF   LS+KYTDV F+KVDVD+ PDVAQE ++  MPTF FYK G+K+ E  G+ +E+LEE V
Sbjct:   27 FTATWCGPCQSIAPFFQSLSQKYTDVVFLKVDVDDTPDVAQECEIKCMPTFHFYKNGKKVDEFSGSNREKLEEKV 101          
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: UPI00038A5F66 (LECA THIOREDOXIN n=1 Tax=synthetic construct TaxID=32630 RepID=UPI00038A5F66)

HSP 1 Score: 104 bits (259), Expect = 2.290e-27
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    1 FHAVWCGPCKAIAPFVSELSEKYTD-VTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELVQQH 234
            F A WCGPCK IAPF  ELSE+Y D V F+KVDVDE+PDVA +  +T+MPTF F+K G+K+ E+VGA +E+L++++ +H
Sbjct:   26 FFATWCGPCKMIAPFFEELSEEYPDKVVFIKVDVDEVPDVAAKYGITSMPTFKFFKNGKKVDELVGANQEKLKQMILKH 104          
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: M7NVF6_PNEMU (Thioredoxin n=1 Tax=Pneumocystis murina (strain B123) TaxID=1069680 RepID=M7NVF6_PNEMU)

HSP 1 Score: 103 bits (256), Expect = 6.020e-27
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 FHAVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELV 225
            F A WCGPC+AIAP + ELSEKYT + F+KVDVD+  D+A E ++TAMPTF F+KGG KIAE+VGA   ++EE +
Sbjct:   25 FFATWCGPCRAIAPKIEELSEKYTGILFLKVDVDQHNDLASEYNITAMPTFLFFKGGIKIAEVVGASSSKVEETI 99          
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: A0A6A6Q6S6_9PEZI (Thioredoxin n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6Q6S6_9PEZI)

HSP 1 Score: 103 bits (256), Expect = 6.190e-27
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    7 AVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELVQQH 234
            A WCGPCKAIAP V + S +YTD  F K+DVDELP+VAQ+  V AMPTF  +K GEK+AE+VGA  + LE+ +QQH
Sbjct:   28 ATWCGPCKAIAPQVVKFSGQYTDARFYKIDVDELPEVAQDLSVRAMPTFMLFKDGEKVAEVVGANPKALEQAIQQH 103          
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: A0A507E1E9_9FUNG (Thioredoxin n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E1E9_9FUNG)

HSP 1 Score: 102 bits (255), Expect = 8.790e-27
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 FHAVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELVQQH 234
            FHA WCGPCK IAP   E S+KY    F+K+DVDE+PDVA++A V++MPTF  YK GEKIAE+VGA   +LE  ++++
Sbjct:   25 FHATWCGPCKMIAPKFEEFSKKYDKAVFIKIDVDEVPDVAEQAGVSSMPTFLIYKNGEKIAEVVGANPTKLETEIKKY 102          
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: B6K874_SCHJY (Thioredoxin n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K874_SCHJY)

HSP 1 Score: 102 bits (254), Expect = 1.210e-26
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 FHAVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELVQQH 234
            F A WCGPCKAIAP V +LS+ YTD TF KVDV+EL +VA  A+V AMPTF FYK G+K+A++VGA   +LE  ++Q+
Sbjct:   25 FFATWCGPCKAIAPKVDQLSKTYTDATFYKVDVEELSEVAVTANVQAMPTFVFYKAGQKVADVVGANPAKLEATIKQN 102          
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: A0A162NF38_PHYB8 (Thioredoxin n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162NF38_PHYB8)

HSP 1 Score: 102 bits (254), Expect = 1.320e-26
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 FHAVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELV 225
            FHAVWCGPCK I P   +LS+ YTD+ F K+DV+E+PDVA + ++ AMPTF FYK G+K+ E++GA   +LEE +
Sbjct:   27 FHAVWCGPCKVIGPKFEKLSDTYTDIVFAKIDVEEVPDVASDVNIRAMPTFLFYKDGQKVGEVIGASLPKLEEQL 101          
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Match: A0A507DEZ8_9FUNG (Thioredoxin domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DEZ8_9FUNG)

HSP 1 Score: 102 bits (254), Expect = 2.400e-26
Identity = 43/78 (55.13%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    1 FHAVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPTFAFYKGGEKIAEMVGAKKERLEELVQQH 234
            F+A WCGPCKAI+PF + +SEK+    ++KVDVDE+PDVA++A + AMPTF  YK G+KI+E+VGA  ++LE ++ +H
Sbjct:   49 FYATWCGPCKAISPFFAAMSEKFPGAEYIKVDVDEVPDVAEKAGIKAMPTFHAYKAGKKISELVGADPKKLEAMIAKH 126          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102535.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P3VMR1_CLUHA1.350e-2859.49Thioredoxin n=1 Tax=Clupea harengus TaxID=7950 Rep... [more]
A0A0L0FHJ9_9EUKA2.280e-2860.26Thioredoxin n=1 Tax=Sphaeroforma arctica JP610 Tax... [more]
UPI001C08D9DE5.480e-2861.33thioredoxin-like n=2 Tax=Alosa TaxID=34772 RepID=U... [more]
UPI00038A5F662.290e-2758.23LECA THIOREDOXIN n=1 Tax=synthetic construct TaxID... [more]
M7NVF6_PNEMU6.020e-2761.33Thioredoxin n=1 Tax=Pneumocystis murina (strain B1... [more]
A0A6A6Q6S6_9PEZI6.190e-2761.84Thioredoxin n=1 Tax=Neohortaea acidophila TaxID=24... [more]
A0A507E1E9_9FUNG8.790e-2757.69Thioredoxin n=1 Tax=Powellomyces hirtus TaxID=1098... [more]
B6K874_SCHJY1.210e-2660.26Thioredoxin n=1 Tax=Schizosaccharomyces japonicus ... [more]
A0A162NF38_PHYB81.320e-2656.00Thioredoxin n=1 Tax=Phycomyces blakesleeanus (stra... [more]
A0A507DEZ8_9FUNG2.400e-2655.13Thioredoxin domain-containing protein n=1 Tax=Sync... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102535contigM-pyrifera_M_contig102535:3..242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score107.1
Seed ortholog evalue3.9e-21
Seed eggNOG ortholog72019.SARC_11242T0
Preferred nameTRX1
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0000096,GO:0000097,GO:0000103,GO:0000302,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005773,GO:0005829,GO:0006082,GO:0006464,GO:0006518,GO:0006520,GO:0006555,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006950,GO:0006979,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009636,GO:0009987,GO:0010035,GO:0015035,GO:0015036,GO:0016043,GO:0016053,GO:0016192,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016999,GO:0017001,GO:0017144,GO:0019379,GO:0019419,GO:0019538,GO:0019725,GO:0019752,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0035690,GO:0036211,GO:0042144,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043094,GO:0043102,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046394,GO:0046677,GO:0046907,GO:0047134,GO:0048193,GO:0048284,GO:0048308,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055114,GO:0061024,GO:0061025,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070013,GO:0070301,GO:0070887,GO:0071236,GO:0071265,GO:0071267,GO:0071704,GO:0071840,GO:0072593,GO:0080058,GO:0080134,GO:0080135,GO:0097237,GO:0097576,GO:0098754,GO:0098869,GO:1900407,GO:1900409,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700,GO:1901701,GO:1902882,GO:1902884,GO:1990355,GO:1990748
EggNOG free text desc.Belongs to the thioredoxin family
EggNOG OGs3A886@33154,COG0526@1,KOG0907@2759
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.6924837-CDS-M-pyrifera_M_contig102535:2..2421622815528.6924837-CDS-M-pyrifera_M_contig102535:2..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102535 3..242 +
1692277450.483243-CDS-M-pyrifera_M_contig102535:2..2421692277450.483243-CDS-M-pyrifera_M_contig102535:2..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102535 3..242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102535.545.1prot_M-pyrifera_M_contig102535.545.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102535 3..242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102535.545.1

>prot_M-pyrifera_M_contig102535.545.1 ID=prot_M-pyrifera_M_contig102535.545.1|Name=mRNA_M-pyrifera_M_contig102535.545.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
FHAVWCGPCKAIAPFVSELSEKYTDVTFVKVDVDELPDVAQEADVTAMPT
FAFYKGGEKIAEMVGAKKERLEELVQQHK*
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mRNA from alignment at M-pyrifera_M_contig102535:3..242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102535.545.1 ID=mRNA_M-pyrifera_M_contig102535.545.1|Name=mRNA_M-pyrifera_M_contig102535.545.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig102535:3..242+ (Macrocystis pyrifera P11B4 male)
TTCCATGCCGTGTGGTGTGGCCCCTGCAAGGCGATCGCCCCTTTCGTGTC AGAGCTGAGCGAGAAGTACACTGATGTCACCTTCGTGAAGGTGGACGTGG ACGAGCTCCCCGACGTTGCACAGGAGGCAGACGTCACCGCTATGCCCACC TTCGCGTTCTACAAGGGTGGCGAGAAGATCGCGGAGATGGTCGGCGCCAA GAAGGAAAGGCTCGAGGAGCTGGTGCAGCAGCACAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102535:3..242+

>mRNA_M-pyrifera_M_contig102535.545.1 ID=mRNA_M-pyrifera_M_contig102535.545.1|Name=mRNA_M-pyrifera_M_contig102535.545.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig102535:3..242+ (Macrocystis pyrifera P11B4 male)
TTCCATGCCGTGTGGTGTGGCCCCTGCAAGGCGATCGCCCCTTTCGTGTC
AGAGCTGAGCGAGAAGTACACTGATGTCACCTTCGTGAAGGTGGACGTGG
ACGAGCTCCCCGACGTTGCACAGGAGGCAGACGTCACCGCTATGCCCACC
TTCGCGTTCTACAAGGGTGGCGAGAAGATCGCGGAGATGGTCGGCGCCAA
GAAGGAAAGGCTCGAGGAGCTGGTGCAGCAGCACAAGTGATTCCATGCCG
TGTGGTGTGGCCCCTGCAAGGCGATCGCCCCTTTCGTGTCAGAGCTGAGC
GAGAAGTACACTGATGTCACCTTCGTGAAGGTGGACGTGGACGAGCTCCC
CGACGTTGCACAGGAGGCAGACGTCACCGCTATGCCCACCTTCGCGTTCT
ACAAGGGTGGCGAGAAGATCGCGGAGATGGTCGGCGCCAAGAAGGAAAGG
CTCGAGGAGCTGGTGCAGCAGCACAAGTGA
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