mRNA_M-pyrifera_M_contig127053.5441.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127053.5441.1
Unique NamemRNA_M-pyrifera_M_contig127053.5441.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: F4Q156_CAVFA (Pleckstrin domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q156_CAVFA)

HSP 1 Score: 81.3 bits (199), Expect = 1.000e-15
Identity = 35/106 (33.02%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGI-GLVQPNREFIEEWLLSNLLEGRTKPRNVKVYVLNDMLIFAE 315
            RIPRY+LLL+D+LKHT+ +HPD+  + + ++++  VA  +ND+  R   S K++ ++ +L      LV  +R ++ E  +S L   + K + + +++ ND++IF++
Sbjct:  587 RIPRYVLLLQDLLKHTESSHPDFTHISEGLDIIKKVAISINDTKRRADNSLKVIEVQNKLVGKFPNLVVADRRYVHEGYVSQLGHSKEKTKKLYIFLFNDIMIFSK 692          
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: A0A7S0DC90_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DC90_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 1.850e-15
Identity = 36/105 (34.29%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGIGLVQPNREFIEEWLLSNLLEGRTKPRNVKVYVLNDMLIFAE 315
            R+PRY LLL++++K TD + PDY  L Q++E++   A  +ND+V R  RS K+ +++     G   V P+R+FI+E   + L +G    +  + ++ ND+ ++A+
Sbjct:  168 RVPRYRLLLQELVKRTDDSVPDYPQLNQALELIKKSATHINDAVKRMDRSRKVRAVQGRFAAGTQFVSPSRQFIKEGHCAKLSDGNRYRQKYQFFLFNDLFLYAD 272          
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: D2VHP8_NAEGR (RhoGEF domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VHP8_NAEGR)

HSP 1 Score: 79.0 bits (193), Expect = 6.510e-15
Identity = 34/106 (32.08%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGIGLVQPNREFIEEWLLSNLLEGR-TKPRNVKVYVLNDMLIFAE 315
            RIPRY LLL+D++KH+ P+HPDY  L+ ++E +  VA  +N+++   + + +++ I+ +    + LV+P+R+F+++  L  ++    TK R++ V++ ND+++ ++
Sbjct:  562 RIPRYRLLLQDLIKHSGPSHPDYKGLKLALEKICEVADHLNNTMKSIEATNEIIKIQSQFYGELNLVEPHRKFLKDGALQEIVSADFTKTRDIYVHLFNDIILLSQ 667          
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: A0A6A5BTP0_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BTP0_NAEFO)

HSP 1 Score: 78.6 bits (192), Expect = 8.950e-15
Identity = 35/106 (33.02%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGIGLVQPNREFIEEWLLSNLLEGR-TKPRNVKVYVLNDMLIFAE 315
            RIPRY LLL+D++KH+ P HPDY  L+ +++ +  VA  +N+++   + +  ++ I+ +    I LV+P+R F++E  L  ++    TK R+  +++ ND+++F++
Sbjct:  600 RIPRYRLLLQDLIKHSGPDHPDYKGLKNALDKICEVADHLNNTMKIIEATNDIIKIQSQFYGDINLVEPHRRFLKEGALQEIISSDFTKTRDTYIHLFNDIVLFSQ 705          
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: A0A7R9K4N5_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9K4N5_TIMGE)

HSP 1 Score: 77.4 bits (189), Expect = 1.890e-14
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGIG-LVQPNREFIEEWLLSNLLEGRTKPRNVKVYVLNDMLIFAE 315
            R+PRY LLLR++L HT P+HPDY  LQ+S+  +  VAK +N  V  ++   K++ +++ LC     L+ P R FI+E +L  +    +K       + ND+LI+ +
Sbjct:   80 RVPRYCLLLREVLAHTAPSHPDYNVLQRSLFAVERVAKHINGLVQDYENMQKMLELQRSLCGNKPCLITPGRRFIKEGMLMKVSPHGSKAHPRYFVLFNDLLIYCK 185          
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: UPI000644990F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644990F)

HSP 1 Score: 77.4 bits (189), Expect = 2.210e-14
Identity = 38/103 (36.89%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGIGLVQPNREFIEEWLLSNLLEGRTKPRNVKVYVLNDMLIF 309
            RI RY +LL ++LKHTDP+HPDYA L ++++ M  V    N+++ R +  AK++ I++       +V P+R F+ E +L+ +     K R   V++ +DMLI+
Sbjct:  516 RITRYHMLLDELLKHTDPSHPDYADLSKALQEMKKVTSEANEAIKRSENRAKVLEIQRMFVGDADIVAPHRSFVFEGVLTKVCRKACKKR--LVFLFSDMLIY 616          
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: A0A7R9D9T7_TIMPO (Hypothetical protein n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9D9T7_TIMPO)

HSP 1 Score: 77.0 bits (188), Expect = 2.960e-14
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGIG-LVQPNREFIEEWLLSNLLE---GRTKPRNVKVY-----VLNDMLIFAE 315
            R+PRY LLLR++L HT P+HPDY  LQ+S+  +  VAK +N  V  ++   K++ +++ LC     L+ P R FI+E +L   L    G+  P   K +     + ND+LI+ +
Sbjct:  267 RVPRYCLLLREVLAHTAPSHPDYNVLQRSLSEVERVAKHINGLVQDYENMQKMLELQRSLCGNKPCLITPGRRFIKEGMLMKRLVNNGGQVSPHGSKAHPRYFVLFNDILIYCK 380          
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: A0A7R9AUR0_TIMSH (Hypothetical protein n=4 Tax=Timema TaxID=61471 RepID=A0A7R9AUR0_TIMSH)

HSP 1 Score: 76.6 bits (187), Expect = 4.060e-14
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGIG-LVQPNREFIEEWLLSNLLEGRTKPRNVKVYVLNDMLIFAE 315
            R+PRY LLLR++L HT P+HPDY  LQ+S+  +  VAK +N  V  ++   K++ +++ LC     LV P R FI+E +L  +    +K       + ND+LI+ +
Sbjct:  261 RVPRYCLLLREVLAHTAPSHPDYNVLQRSLFEVERVAKHINGLVQDYENMQKMLELQRSLCGNKPCLVTPGRRFIKEGMLMKVSPHGSKAHPRYFVLFNDILIYCK 366          
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: D3B7C2_POLPP (Pleckstrin domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B7C2_POLPP)

HSP 1 Score: 76.6 bits (187), Expect = 4.170e-14
Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGI-GLVQPNREFIEE-WLLSNLLEGRTKPRNVKVYVLNDMLIFA 312
            RIPRY+LLL+D+LKHT+ +HPD+  + + +E++  VA  +ND+  R   S K++ ++ +L      LV  +R ++ E +LLS       K + V +++ ND++IF+
Sbjct:  516 RIPRYVLLLQDLLKHTEESHPDFPHITEGLEIIKKVAISINDTKRRADNSLKVIEVQNKLVGKFPNLVVADRRYVHEGYLLSG--PSNVKTKKVYIFLFNDIIIFS 619          
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Match: A0A8J4PYE2_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PYE2_9MYCE)

HSP 1 Score: 76.3 bits (186), Expect = 5.710e-14
Identity = 42/108 (38.89%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRSAKLVSIEQELCIGI-GLVQPNREFIEEWLLSNLLEGRT--KPRNVKVYVLNDMLIFAE 315
            RIPRY+LLL+D+LKHT+ +HPDY+ + ++++++ +VA  +ND+  +   S K+V ++ +L      LV   R +I E     LL G T  K + V V++ ND+LIF++
Sbjct:  601 RIPRYVLLLQDLLKHTEESHPDYSHIVKALDLIKSVAMSINDTKRQSDNSLKVVEVQNKLLGKCPNLVIAERRYIYE---GYLLVGDTFAKSKRVYVFLFNDILIFSK 705          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127053.5441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F4Q156_CAVFA1.000e-1533.02Pleckstrin domain-containing protein n=1 Tax=Caven... [more]
A0A7S0DC90_9EUKA1.850e-1534.29Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
D2VHP8_NAEGR6.510e-1532.08RhoGEF domain-containing protein n=1 Tax=Naegleria... [more]
A0A6A5BTP0_NAEFO8.950e-1533.02Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A7R9K4N5_TIMGE1.890e-1436.79Hypothetical protein n=1 Tax=Timema genevievae Tax... [more]
UPI000644990F2.210e-1436.89hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7R9D9T7_TIMPO2.960e-1436.84Hypothetical protein n=1 Tax=Timema poppense TaxID... [more]
A0A7R9AUR0_TIMSH4.060e-1437.74Hypothetical protein n=4 Tax=Timema TaxID=61471 Re... [more]
D3B7C2_POLPP4.170e-1435.85Pleckstrin domain-containing protein n=1 Tax=Polys... [more]
A0A8J4PYE2_9MYCE5.710e-1438.89Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127053contigM-pyrifera_M_contig127053:191..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue8.9e-13
Seed eggNOG ortholog5762.XP_002676373.1
KEGG koko:K05724
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
EggNOG OGsCOG5422@1,KOG4424@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.0726738-CDS-M-pyrifera_M_contig127053:190..5051622815784.0726738-CDS-M-pyrifera_M_contig127053:190..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127053 191..505 -
1692277567.7323773-CDS-M-pyrifera_M_contig127053:190..5051692277567.7323773-CDS-M-pyrifera_M_contig127053:190..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127053 191..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127053.5441.1prot_M-pyrifera_M_contig127053.5441.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127053 191..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127053.5441.1

>prot_M-pyrifera_M_contig127053.5441.1 ID=prot_M-pyrifera_M_contig127053.5441.1|Name=mRNA_M-pyrifera_M_contig127053.5441.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
RIPRYILLLRDMLKHTDPAHPDYATLQQSIEVMSAVAKGVNDSVARFQRS
AKLVSIEQELCIGIGLVQPNREFIEEWLLSNLLEGRTKPRNVKVYVLNDM
LIFAE
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mRNA from alignment at M-pyrifera_M_contig127053:191..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127053.5441.1 ID=mRNA_M-pyrifera_M_contig127053.5441.1|Name=mRNA_M-pyrifera_M_contig127053.5441.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig127053:191..505- (Macrocystis pyrifera P11B4 male)
CGCATTCCCCGCTACATTCTCCTCCTCCGCGACATGCTCAAGCACACCGA CCCTGCCCATCCGGACTACGCCACCCTGCAGCAGAGCATCGAGGTGATGT CCGCCGTGGCCAAGGGCGTGAACGATAGTGTCGCCCGCTTCCAGCGCAGC GCAAAGCTGGTCTCCATCGAGCAGGAGCTGTGCATCGGGATCGGCCTCGT GCAGCCCAACAGGGAATTCATCGAGGAATGGCTCCTCTCCAATCTCCTCG AGGGCCGGACCAAGCCAAGGAATGTCAAGGTCTACGTGCTGAACGACATG CTGATCTTCGCTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127053:191..505-

>mRNA_M-pyrifera_M_contig127053.5441.1 ID=mRNA_M-pyrifera_M_contig127053.5441.1|Name=mRNA_M-pyrifera_M_contig127053.5441.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig127053:191..505- (Macrocystis pyrifera P11B4 male)
CGCATTCCCCGCTACATTCTCCTCCTCCGCGACATGCTCAAGCACACCGA
CCCTGCCCATCCGGACTACGCCACCCTGCAGCAGAGCATCGAGGTGATGT
CCGCCGTGGCCAAGGGCGTGAACGATAGTGTCGCCCGCTTCCAGCGCAGC
GCAAAGCTGGTCTCCATCGAGCAGGAGCTGTGCATCGGGATCGGCCTCGT
GCAGCCCAACAGGGAATTCATCGAGGAATGGCTCCTCTCCAATCTCCTCG
AGGGCCGGACCAAGCCAAGGAATGTCAAGGTCTACGTGCTGAACGACATG
CTGATCTTCGCTGAGCGCATTCCCCGCTACATTCTCCTCCTCCGCGACAT
GCTCAAGCACACCGACCCTGCCCATCCGGACTACGCCACCCTGCAGCAGA
GCATCGAGGTGATGTCCGCCGTGGCCAAGGGCGTGAACGATAGTGTCGCC
CGCTTCCAGCGCAGCGCAAAGCTGGTCTCCATCGAGCAGGAGCTGTGCAT
CGGGATCGGCCTCGTGCAGCCCAACAGGGAATTCATCGAGGAATGGCTCC
TCTCCAATCTCCTCGAGGGCCGGACCAAGCCAAGGAATGTCAAGGTCTAC
GTGCTGAACGACATGCTGATCTTCGCTGAG
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