mRNA_M-pyrifera_M_contig127047.5439.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127047.5439.1
Unique NamemRNA_M-pyrifera_M_contig127047.5439.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig127047.5439.1 vs. uniprot
Match: A0A7Y2GQT5_9ACTN (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GQT5_9ACTN)

HSP 1 Score: 105 bits (263), Expect = 5.140e-26
Identity = 53/98 (54.08%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   10 LSIPEYRRFLTEETARLQSTSVDHLDIDLPHIEGWTVGAVLGHTGWVFRYVTAVLGSTPDKPPSRRDIPEPPIGEPVLEWFAESAALLTAKLDSVDPE 303
            LS   Y   + +E+ARL +TS   L+  +PHIEGWTVG VLGHTGWV RYVT +   +PD PPSR  IP PP G  VL W AE+   LT  L++ DPE
Sbjct:    3 LSRDRYLSQIADESARLLATSPSALEQPIPHIEGWTVGDVLGHTGWVARYVTLLQAVSPDDPPSRSAIPNPPAGAEVLNWAAEAVDGLTVALEASDPE 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig127047.5439.1 vs. uniprot
Match: A0A7Y2IFT7_9ACTN (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IFT7_9ACTN)

HSP 1 Score: 93.2 bits (230), Expect = 4.100e-21
Identity = 44/89 (49.44%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:   37 LTEETARLQSTSVDHLDIDLPHIEGWTVGAVLGHTGWVFRYVTAVLGSTPDKPPSRRDIPEPPIGEPVLEWFAESAALLTAKLDSVDPE 303
            + +E+ RL +T    L   +PHIE WTVG VLGHTGWV RYVT +  +TP+ PP+R  IP PP G  VL W +E    L   L   DPE
Sbjct:   12 IADESTRLLATDASQLSFSIPHIEAWTVGDVLGHTGWVARYVTLLQTATPENPPARSAIPTPPAGSDVLVWASEGLQDLGIALADSDPE 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig127047.5439.1 vs. uniprot
Match: A0A7K2AZ31_9ACTN (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2AZ31_9ACTN)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-8
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   82 LDIDLPHIEGWTVGAVLGHTGWVFRYVTAVLGSTPDKPPSRRDIPEPPIGEPVLEWFAESAALLTAKLDSVDP 300
            LD  +P    W++  ++GH GWV+ +V+  + +      +R D+P PP GE V+EWF ++ A + A L  +DP
Sbjct:   44 LDAPVPSCPRWSLDRLVGHLGWVYNWVSEHVEARSATMLNREDVPRPPRGEAVVEWFGDAHARVLAALRDIDP 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig127047.5439.1 vs. uniprot
Match: A0A6N7FJW8_9ACTN (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FJW8_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 2.490e-8
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:   94 LPHIEGWTVGAVLGHTGWVFRYVTAVLGSTPDKPPSRRDIPEPPIGEPVLEWFAESAALLTAKLDSVDPET 306
            +P    W V  ++GHTGW+F +VTA L +  ++  S + I   P G  VL WFAE+  +L   LD V P T
Sbjct:   30 VPGCPDWDVAGLIGHTGWIFNFVTANLRAGGERV-SAKSIAAAPSGPDVLPWFAEALGVLVTALDEVSPAT 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig127047.5439.1 vs. uniprot
Match: A0A6B1C4L1_9ACTN (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=3 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1C4L1_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 2.370e-6
Identity = 27/93 (29.03%), Postives = 44/93 (47.31%), Query Frame = 1 
Query:   25 YRRFLTEETARLQSTSVDHLDIDLPHIEGWTVGAVLGHTGWVFRYVTAVLGSTPDKPPSRRDIPEPPIGEPVLEWFAESAALLTAKLDSVDPE 303
            Y++ L  +   + +     +D  +P   GWTV  +L H G V+R V   +     +     +IP PP G+ ++EWF E    +   LD  DP+
Sbjct:    8 YQQALRSDGEAIAAAGRRDIDAIVPSCPGWTVHKLLAHVGRVYRSVGRHVAERATEMIPADEIPRPPEGDAIVEWFEEGHLFVQEALDGADPD 100
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127047.5439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7Y2GQT5_9ACTN5.140e-2654.08Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A7Y2IFT7_9ACTN4.100e-2149.44Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A7K2AZ31_9ACTN1.060e-835.62Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A6N7FJW8_9ACTN2.490e-840.85Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A6B1C4L1_9ACTN2.370e-629.03Maleylpyruvate isomerase family mycothiol-dependen... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127047contigM-pyrifera_M_contig127047:5..310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.9723227-CDS-M-pyrifera_M_contig127047:4..3101622815783.9723227-CDS-M-pyrifera_M_contig127047:4..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127047 5..310 -
1692277567.7074077-CDS-M-pyrifera_M_contig127047:4..3101692277567.7074077-CDS-M-pyrifera_M_contig127047:4..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127047 5..310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127047.5439.1prot_M-pyrifera_M_contig127047.5439.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127047 5..310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127047.5439.1

>prot_M-pyrifera_M_contig127047.5439.1 ID=prot_M-pyrifera_M_contig127047.5439.1|Name=mRNA_M-pyrifera_M_contig127047.5439.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MPQLSIPEYRRFLTEETARLQSTSVDHLDIDLPHIEGWTVGAVLGHTGWV
FRYVTAVLGSTPDKPPSRRDIPEPPIGEPVLEWFAESAALLTAKLDSVDP
ET
back to top

mRNA from alignment at M-pyrifera_M_contig127047:5..310-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127047.5439.1 ID=mRNA_M-pyrifera_M_contig127047.5439.1|Name=mRNA_M-pyrifera_M_contig127047.5439.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig127047:5..310- (Macrocystis pyrifera P11B4 male)
ATGCCTCAGCTGTCCATTCCTGAGTACCGGCGGTTCCTCACCGAGGAAAC
GGCGCGTCTCCAGTCGACTTCGGTCGACCACCTCGACATCGATCTTCCCC
ACATCGAGGGATGGACCGTCGGTGCGGTGCTCGGTCACACCGGCTGGGTC
TTCCGCTACGTGACCGCCGTGCTCGGCTCGACACCAGACAAGCCTCCGAG
TCGACGTGACATTCCCGAACCTCCCATCGGTGAACCGGTGCTCGAGTGGT
TCGCGGAGTCGGCGGCGCTCTTGACGGCCAAGCTCGACTCGGTCGACCCC
GAGACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127047:5..310-

>mRNA_M-pyrifera_M_contig127047.5439.1 ID=mRNA_M-pyrifera_M_contig127047.5439.1|Name=mRNA_M-pyrifera_M_contig127047.5439.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig127047:5..310- (Macrocystis pyrifera P11B4 male)
ATGCCTCAGCTGTCCATTCCTGAGTACCGGCGGTTCCTCACCGAGGAAAC
GGCGCGTCTCCAGTCGACTTCGGTCGACCACCTCGACATCGATCTTCCCC
ACATCGAGGGATGGACCGTCGGTGCGGTGCTCGGTCACACCGGCTGGGTC
TTCCGCTACGTGACCGCCGTGCTCGGCTCGACACCAGACAAGCCTCCGAG
TCGACGTGACATTCCCGAACCTCCCATCGGTGAACCGGTGCTCGAGTGGT
TCGCGGAGTCGGCGGCGCTCTTGACGGCCAAGCTCGACTCGGTCGACCCC
GAGACCATGCCTCAGCTGTCCATTCCTGAGTACCGGCGGTTCCTCACCGA
GGAAACGGCGCGTCTCCAGTCGACTTCGGTCGACCACCTCGACATCGATC
TTCCCCACATCGAGGGATGGACCGTCGGTGCGGTGCTCGGTCACACCGGC
TGGGTCTTCCGCTACGTGACCGCCGTGCTCGGCTCGACACCAGACAAGCC
TCCGAGTCGACGTGACATTCCCGAACCTCCCATCGGTGAACCGGTGCTCG
AGTGGTTCGCGGAGTCGGCGGCGCTCTTGACGGCCAAGCTCGACTCGGTC
GACCCCGAGACC
back to top