mRNA_M-pyrifera_M_contig126951.5432.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126951.5432.1
Unique NamemRNA_M-pyrifera_M_contig126951.5432.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: A0A5A8DJU7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJU7_CAFRO)

HSP 1 Score: 78.2 bits (191), Expect = 1.110e-14
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   64 PPWLRSRLLANSRVRLGPHDGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTFSRAYQSFRP 306
            PPWL S+L  ++R+  GP DGFDVYVD   F PDN+ +SKVVFK M   Y V+G      + LD  ++ P +  A+ +FRP
Sbjct:   23 PPWLASQLPHSARLPFGPGDGFDVYVDRAVFCPDNLGMSKVVFKLMDASYTVLGDPMEKASRLDCSLIEPEYG-AHSAFRP 102          
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: A0A5A8CI47_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CI47_CAFRO)

HSP 1 Score: 78.2 bits (191), Expect = 1.170e-14
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   64 PPWLRSRLLANSRVRLGPHDGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTFSRAYQSFRP 306
            PPWL S+L  ++R+  GP DGFDVYVD   F PDN+ +SKVVFK M   Y V+G      + LD  ++ P +  A+ +FRP
Sbjct:  414 PPWLASQLPHSARLPFGPGDGFDVYVDRAVFCPDNLGMSKVVFKLMDASYTVLGDPMEKASRLDCSLIEPEYG-AHSAFRP 493          
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: A0A1I8HFL5_9PLAT (Uncharacterized protein n=6 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HFL5_9PLAT)

HSP 1 Score: 62.4 bits (150), Expect = 4.040e-9
Identity = 37/98 (37.76%), Postives = 50/98 (51.02%), Query Frame = 1
Query:   28 PTSMRGAGGSGEPPWLRSRLLANSRVRLGPH---DGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTFSRAYQSFRPPE 312
            P+     G    PP L    L   R  L P    DGFD+Y+DG RFLPD V ++K+  + +   Y  IG E S +A LDS++ +P F    Q  R P+
Sbjct:  471 PSDDSDEGQEDNPPPLSWIPLERRRPPLDPFHASDGFDLYLDGCRFLPDTVTITKIRSRLLTRRYQAIGNEISCMASLDSDIYNPEFDHR-QEIREPD 567          
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: A0A267GFP5_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GFP5_9PLAT)

HSP 1 Score: 62.4 bits (150), Expect = 4.040e-9
Identity = 37/98 (37.76%), Postives = 50/98 (51.02%), Query Frame = 1
Query:   28 PTSMRGAGGSGEPPWLRSRLLANSRVRLGPH---DGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTFSRAYQSFRPPE 312
            P+     G    PP L    L   R  L P    DGFD+Y+DG RFLPD V ++K+  + +   Y  IG E S +A LDS++ +P F    Q  R P+
Sbjct:  471 PSDDSDEGQEDNPPPLSWIPLERRRPPLDPFHASDGFDLYLDGCRFLPDTVTITKIRSRLLTRRYQAIGNEISCMASLDSDIYNPEFDHR-QEIREPD 567          
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: A0A6P8I8D7_ACTTE (uncharacterized protein LOC116299741 isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I8D7_ACTTE)

HSP 1 Score: 61.6 bits (148), Expect = 7.400e-9
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   70 WLRSRLLANSRVRLGPHDGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTFSRAYQSFRPP 309
            WL++     +     P  GFD+Y+DGVRFLPD+V +SKV  + M   Y+ +G +  A + L S++ +P F    + FR P
Sbjct:  535 WLKNARSFVTNKMFTPGSGFDLYIDGVRFLPDSVTVSKVAGRVMDKNYDKVGPDVEAQSKLYSDIYNPEFDHRLE-FREP 613          
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: UPI001CF447FD (uncharacterized protein LOC114961397 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF447FD)

HSP 1 Score: 61.2 bits (147), Expect = 1.050e-8
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   70 WLRSRLLANSRVRLGPHDGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTFS 282
            W+++   +         +GFDVY+DG RFLPD+V +SKVV + +   Y  IG E    A+LDS++ +P ++
Sbjct:  938 WIKNGRSSILTKEFEEGNGFDVYIDGARFLPDSVTISKVVGRVLDKNYTRIGSEIDVQAELDSDIYNPEYN 1008          
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: UPI00077A0557 (uncharacterized protein LOC107337955 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A0557)

HSP 1 Score: 60.5 bits (145), Expect = 1.270e-8
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   70 WLRSRLLANSRVRLGPHDGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTFS 282
            W+++   +         +GFDVY+DG RFLPD+V +SKVV + +   Y  IG E    A+LDS++ +P ++
Sbjct:  137 WIKNGRSSILTKEFEEGNGFDVYIDGSRFLPDSVTISKVVGRVLDKNYTRIGSEIDVQAELDSDIYNPEYN 207          
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: A0A0G4IVD4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IVD4_PLABS)

HSP 1 Score: 60.5 bits (145), Expect = 1.960e-8
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   10 PVVKAFPTSMRGAGGSGEPPWLRSRLLANSRVRLGPHDGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNV-IGKEASALADLDSEMLSPTF 279
            P +KA P  +  A  S   PW++        V   P DGFDVYVD  RFLPDNV +++ V +    ++ V +G+ A A+    S++  PTF
Sbjct: 1201 PQLKAVPL-LADATTSSSAPWIKVDAGPPPDVAFEPGDGFDVYVDQCRFLPDNVTVTRAVLQVWTSDFGVGVGERALAVCSTGSQVQHPTF 1290          
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: K1Q3U9_CRAGI (Coiled-coil domain-containing protein 17 n=7 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q3U9_CRAGI)

HSP 1 Score: 60.1 bits (144), Expect = 2.610e-8
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   70 WLRSRLLANSRVRLGPHDGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTF 279
            WL        R      DGFDVYVDG R+LPD+V  SKV  + +  +Y V GK+ +A  +LDS++ +P +
Sbjct:  429 WLPFERSKPCRDPFLSGDGFDVYVDGCRYLPDSVTFSKVAGRVLDRKYEVHGKDINATVNLDSDIYNPVY 498          
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Match: A0A8B8CHJ6_CRAVI (uncharacterized protein LOC111119376 isoform X1 n=8 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CHJ6_CRAVI)

HSP 1 Score: 58.9 bits (141), Expect = 6.780e-8
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   70 WLRSRLLANSRVRLGPHDGFDVYVDGVRFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTF 279
            WL        R      DGFDVYVDG RFLPD+V  +KV  + +  +Y V GK+ +A   LDS++ +P +
Sbjct:  987 WLPCERSKAPRDPFLSGDGFDVYVDGCRFLPDSVTFTKVAARVLDRKYEVHGKDINANVTLDSDIYNPIY 1056          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126951.5432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DJU7_CAFRO1.110e-1446.91Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CI47_CAFRO1.170e-1446.91Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A1I8HFL5_9PLAT4.040e-937.76Uncharacterized protein n=6 Tax=Macrostomum lignan... [more]
A0A267GFP5_9PLAT4.040e-937.76Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A6P8I8D7_ACTTE7.400e-937.50uncharacterized protein LOC116299741 isoform X1 n=... [more]
UPI001CF447FD1.050e-838.03uncharacterized protein LOC114961397 n=1 Tax=Acrop... [more]
UPI00077A05571.270e-838.03uncharacterized protein LOC107337955 n=1 Tax=Acrop... [more]
A0A0G4IVD4_PLABS1.960e-837.36Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
K1Q3U9_CRAGI2.610e-841.43Coiled-coil domain-containing protein 17 n=7 Tax=C... [more]
A0A8B8CHJ6_CRAVI6.780e-841.43uncharacterized protein LOC111119376 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126951contigM-pyrifera_M_contig126951:148..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.5798182-CDS-M-pyrifera_M_contig126951:147..4591622815783.5798182-CDS-M-pyrifera_M_contig126951:147..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126951 148..459 +
1692277567.4953094-CDS-M-pyrifera_M_contig126951:147..4591692277567.4953094-CDS-M-pyrifera_M_contig126951:147..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126951 148..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126951.5432.1prot_M-pyrifera_M_contig126951.5432.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126951 148..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126951.5432.1

>prot_M-pyrifera_M_contig126951.5432.1 ID=prot_M-pyrifera_M_contig126951.5432.1|Name=mRNA_M-pyrifera_M_contig126951.5432.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
ATPPVVKAFPTSMRGAGGSGEPPWLRSRLLANSRVRLGPHDGFDVYVDGV
RFLPDNVLLSKVVFKAMGPEYNVIGKEASALADLDSEMLSPTFSRAYQSF
RPPE
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mRNA from alignment at M-pyrifera_M_contig126951:148..459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126951.5432.1 ID=mRNA_M-pyrifera_M_contig126951.5432.1|Name=mRNA_M-pyrifera_M_contig126951.5432.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig126951:148..459+ (Macrocystis pyrifera P11B4 male)
GCAACACCACCTGTTGTGAAAGCCTTCCCTACATCAATGCGTGGTGCTGG TGGATCTGGAGAACCACCATGGTTACGATCAAGATTGCTGGCAAACAGCC GTGTTCGACTTGGCCCCCATGATGGGTTTGATGTTTATGTTGATGGAGTG CGTTTCCTACCAGACAATGTGCTCTTGTCCAAAGTTGTATTCAAAGCAAT GGGGCCTGAGTACAACGTGATTGGGAAGGAAGCGTCAGCGTTGGCAGATT TGGACTCAGAAATGCTCTCTCCGACATTCTCACGTGCATACCAATCTTTC CGACCACCAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126951:148..459+

>mRNA_M-pyrifera_M_contig126951.5432.1 ID=mRNA_M-pyrifera_M_contig126951.5432.1|Name=mRNA_M-pyrifera_M_contig126951.5432.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig126951:148..459+ (Macrocystis pyrifera P11B4 male)
GCAACACCACCTGTTGTGAAAGCCTTCCCTACATCAATGCGTGGTGCTGG
TGGATCTGGAGAACCACCATGGTTACGATCAAGATTGCTGGCAAACAGCC
GTGTTCGACTTGGCCCCCATGATGGGTTTGATGTTTATGTTGATGGAGTG
CGTTTCCTACCAGACAATGTGCTCTTGTCCAAAGTTGTATTCAAAGCAAT
GGGGCCTGAGTACAACGTGATTGGGAAGGAAGCGTCAGCGTTGGCAGATT
TGGACTCAGAAATGCTCTCTCCGACATTCTCACGTGCATACCAATCTTTC
CGACCACCAGAAGCAACACCACCTGTTGTGAAAGCCTTCCCTACATCAAT
GCGTGGTGCTGGTGGATCTGGAGAACCACCATGGTTACGATCAAGATTGC
TGGCAAACAGCCGTGTTCGACTTGGCCCCCATGATGGGTTTGATGTTTAT
GTTGATGGAGTGCGTTTCCTACCAGACAATGTGCTCTTGTCCAAAGTTGT
ATTCAAAGCAATGGGGCCTGAGTACAACGTGATTGGGAAGGAAGCGTCAG
CGTTGGCAGATTTGGACTCAGAAATGCTCTCTCCGACATTCTCACGTGCA
TACCAATCTTTCCGACCACCAGAA
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