mRNA_M-pyrifera_M_contig12692.5425.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12692.5425.1
Unique NamemRNA_M-pyrifera_M_contig12692.5425.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: A0A6H5K918_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K918_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.610e-23
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    7 VFRCPEPEKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDFTK 177
            VFRC EP KGWGLRC++ IPAGSFVACYLGEVL DR VD++G++  DDY+FGLDF K
Sbjct:    2 VFRCAEPGKGWGLRCVEPIPAGSFVACYLGEVLTDRSVDDRGRQTHDDYVFGLDFAK 58
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BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: D7FM06_ECTSI (Similar to SET domain, bifurcated 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM06_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.250e-22
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 MKVFRCPEPEKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDFTK 177
            ++VFRC E  KGWGLRC++ IPAGSFVACYLGEVL DR VD++G++  DDY+FGLDF K
Sbjct:  451 LQVFRCAESGKGWGLRCVEPIPAGSFVACYLGEVLTDRSVDDRGRQTHDDYVFGLDFAK 509
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BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: A0A6G0Y2E9_APHCR (Uncharacterized protein (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0Y2E9_APHCR)

HSP 1 Score: 75.5 bits (184), Expect = 1.640e-14
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   28 EKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDFTK 177
            +KGWG+RCL+ IP G+F+ CY+G +L D + DEQGKK GD+Y+  LDF +
Sbjct:  355 KKGWGVRCLNDIPRGTFICCYIGNILNDTNADEQGKKYGDEYLLDLDFIE 404
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BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: A0A7R9U8J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8J4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.960e-13
Identity = 27/57 (47.37%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 MKVFRCPEPEKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDF 171
            ++VFR    ++GWG+RCL+ IPAG+FV  Y+GE+L +++ + +G +NGD+Y+F LD+
Sbjct:  179 LQVFRTA--DRGWGVRCLNDIPAGAFVTDYIGEILTEKEAEARGMQNGDEYLFDLDY 233
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BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: A0A6G0TCH0_APHGL (Uncharacterized protein n=2 Tax=Aphis TaxID=464929 RepID=A0A6G0TCH0_APHGL)

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-12
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   28 EKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDF 171
            +KGWG+RCL+ IP G+F+ CY+G +L + +VDEQG   GD+Y+  LDF
Sbjct:  330 KKGWGVRCLNDIPRGTFICCYIGNILNETNVDEQGINYGDEYLLDLDF 377
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BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: UPI000B93996C (histone-lysine N-methyltransferase SETDB1-B-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B93996C)

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-12
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   28 EKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDFTK 177
            +KGWG+RCL+ IP G+F+ CY+G +L + +  EQGKK GD+Y+  LDF +
Sbjct:  412 KKGWGVRCLNDIPKGTFICCYIGNILTETNATEQGKKYGDEYLADLDFIE 461
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BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: A0A2S2PMK8_SCHGA (Histone-lysine N-methyltransferase eggless n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PMK8_SCHGA)

HSP 1 Score: 69.7 bits (169), Expect = 1.710e-12
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   28 EKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDFTK 177
            +KGWG+RCL+ IP G+F+ CY+G +L + D  EQGK  GD+Y+  LDF +
Sbjct:  210 KKGWGVRCLNDIPQGTFICCYVGNILTETDATEQGKNYGDEYLADLDFIE 259
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BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: UPI000F00B2D5 (LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETDB1-like n=1 Tax=Rhopalosiphum maidis TaxID=43146 RepID=UPI000F00B2D5)

HSP 1 Score: 68.9 bits (167), Expect = 3.330e-12
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   28 EKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDFTK 177
            +KGWG+RCL+ IP G+F+ CY+G +L + +  EQGK +GD+Y+  LDF +
Sbjct:  476 KKGWGVRCLNDIPRGTFICCYVGNILTETNATEQGKNHGDEYLADLDFIE 525
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BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: J9K9U4_ACYPI (Uncharacterized protein n=3 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9K9U4_ACYPI)

HSP 1 Score: 67.8 bits (164), Expect = 8.440e-12
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   28 EKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDFTK 177
            +KGWG+RCL+ I  G+F+ CY+G++L + +  EQGKK GD+Y+  LDF +
Sbjct:  273 KKGWGVRCLNDIARGTFICCYIGDILTETNATEQGKKYGDEYLADLDFIE 322
[Close]
BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Match: UPI001B888FA3 (histone-lysine N-methyltransferase eggless-like isoform X1 n=3 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888FA3)

HSP 1 Score: 66.2 bits (160), Expect = 2.990e-11
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   28 EKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDDYMFGLDFTK 177
            +KGWGLRCLD +P+GSF+  Y G++L ++  +E GK+ GD+Y+  LDF +
Sbjct:  882 KKGWGLRCLDDVPSGSFLCIYAGQLLTEKGANEDGKQYGDEYLAELDFIE 931
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12692.5425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K918_9PHAE2.610e-2373.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM06_ECTSI1.250e-2269.49Similar to SET domain, bifurcated 1 n=1 Tax=Ectoca... [more]
A0A6G0Y2E9_APHCR1.640e-1456.00Uncharacterized protein (Fragment) n=1 Tax=Aphis c... [more]
A0A7R9U8J4_9STRA3.960e-1347.37Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6G0TCH0_APHGL1.300e-1254.17Uncharacterized protein n=2 Tax=Aphis TaxID=464929... [more]
UPI000B93996C1.300e-1252.00histone-lysine N-methyltransferase SETDB1-B-like n... [more]
A0A2S2PMK8_SCHGA1.710e-1252.00Histone-lysine N-methyltransferase eggless n=1 Tax... [more]
UPI000F00B2D53.330e-1250.00LOW QUALITY PROTEIN: histone-lysine N-methyltransf... [more]
J9K9U4_ACYPI8.440e-1250.00Uncharacterized protein n=3 Tax=Acyrthosiphon pisu... [more]
UPI001B888FA32.990e-1150.00histone-lysine N-methyltransferase eggless-like is... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12692contigM-pyrifera_M_contig12692:367..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D7FM06
Preferred nameSETDB2
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K09097,ko:K10779,ko:K11421,ko:K18494,ko:K18626,ko:K18655
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04066,ko04550,ko04934,ko05200,ko05204,ko05211,map00310,map04066,map04550,map04934,map05200,map05204,map05211
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000122,GO:0000278,GO:0001501,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001947,GO:0002009,GO:0003002,GO:0003006,GO:0003007,GO:0003143,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008283,GO:0008356,GO:0008757,GO:0009292,GO:0009294,GO:0009506,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0016020,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0017145,GO:0018022,GO:0018023,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030054,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0033043,GO:0033044,GO:0034968,GO:0035050,GO:0035239,GO:0035295,GO:0035556,GO:0036124,GO:0036211,GO:0040007,GO:0040029,GO:0042054,GO:0042078,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0045892,GO:0045934,GO:0045935,GO:0046974,GO:0048132,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048589,GO:0048598,GO:0048609,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051037,GO:0051038,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051321,GO:0051567,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0060348,GO:0060429,GO:0060562,GO:0060968,GO:0060972,GO:0061371,GO:0061647,GO:0065007,GO:0070013,GO:0070986,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0080090,GO:0090308,GO:0090309,GO:0097159,GO:0098722,GO:0098728,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:1905269,GO:1990841,GO:2000112,GO:2000113,GO:2001141,GO:2001252
EggNOG free text desc.histone-lysine N-methyltransferase activity
EggNOG OGsCOG0553@1,COG2940@1,KOG1015@2759,KOG1141@2759
EC2.1.1.43,3.6.4.12,3.6.4.13
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03019,ko03036,ko04812
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.2404644-CDS-M-pyrifera_M_contig12692:366..5431622815783.2404644-CDS-M-pyrifera_M_contig12692:366..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12692 367..543 +
1692277567.3452766-CDS-M-pyrifera_M_contig12692:366..5431692277567.3452766-CDS-M-pyrifera_M_contig12692:366..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12692 367..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12692.5425.1prot_M-pyrifera_M_contig12692.5425.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12692 367..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12692.5425.1

>prot_M-pyrifera_M_contig12692.5425.1 ID=prot_M-pyrifera_M_contig12692.5425.1|Name=mRNA_M-pyrifera_M_contig12692.5425.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MKVFRCPEPEKGWGLRCLDRIPAGSFVACYLGEVLRDRDVDEQGKKNGDD
YMFGLDFTK
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mRNA from alignment at M-pyrifera_M_contig12692:367..543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12692.5425.1 ID=mRNA_M-pyrifera_M_contig12692.5425.1|Name=mRNA_M-pyrifera_M_contig12692.5425.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig12692:367..543+ (Macrocystis pyrifera P11B4 male)
ATGAAGGTGTTTCGGTGCCCTGAGCCTGAAAAGGGCTGGGGACTGCGCTG
CCTCGACCGAATCCCGGCGGGATCCTTCGTGGCGTGCTACCTGGGTGAAG
TCCTTCGGGACCGTGACGTGGACGAGCAAGGAAAGAAAAACGGCGACGAC
TACATGTTCGGCCTCGACTTCACGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12692:367..543+

>mRNA_M-pyrifera_M_contig12692.5425.1 ID=mRNA_M-pyrifera_M_contig12692.5425.1|Name=mRNA_M-pyrifera_M_contig12692.5425.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig12692:367..543+ (Macrocystis pyrifera P11B4 male)
ATGAAGGTGTTTCGGTGCCCTGAGCCTGAAAAGGGCTGGGGACTGCGCTG
CCTCGACCGAATCCCGGCGGGATCCTTCGTGGCGTGCTACCTGGGTGAAG
TCCTTCGGGACCGTGACGTGGACGAGCAAGGAAAGAAAAACGGCGACGAC
TACATGTTCGGCCTCGACTTCACGAAGATGAAGGTGTTTCGGTGCCCTGA
GCCTGAAAAGGGCTGGGGACTGCGCTGCCTCGACCGAATCCCGGCGGGAT
CCTTCGTGGCGTGCTACCTGGGTGAAGTCCTTCGGGACCGTGACGTGGAC
GAGCAAGGAAAGAAAAACGGCGACGACTACATGTTCGGCCTCGACTTCAC
GAAG
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