mRNA_M-pyrifera_M_contig126916.5423.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126916.5423.1
Unique NamemRNA_M-pyrifera_M_contig126916.5423.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: UPI00201FA0F3 (uncharacterized protein LOC124131564 isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201FA0F3)

HSP 1 Score: 151 bits (381), Expect = 3.350e-39
Identity = 72/170 (42.35%), Postives = 94/170 (55.29%), Query Frame = 1
Query:    1 GYFCE--EVTVAPEECPAGTYNPHYGGVSEEEDCLPCPAGSYCEVASANI-TGVCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            G++C   +V   P  CP GT+NP YG   +  DC+ C  GSYC     +   G C  GY+CP G+ +P    CP  +Y          DC  C SG YC      TP+ CP G +CV+G   P+PCP G+YGN++ LRR+ DC+PC  G YC G G  EP+  C AG+YC
Sbjct: 2768 GHYCPAGDVNPYPVPCPNGTFNPDYGR-KQVSDCVQCTPGSYCIPEGLSTPAGDCPGGYYCPLGTAAPESYPCPIGFYRNGSARESFQDCTECISGFYCDREGLATPISCPRGYFCVSGSTFPQPCPLGTYGNSTELRRSTDCTPCPGGYYCDGIGRVEPTDVCDAGFYC 2936          
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: UPI0018F5A97B (multiple epidermal growth factor-like domains protein 6 n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F5A97B)

HSP 1 Score: 149 bits (376), Expect = 1.390e-38
Identity = 72/175 (41.14%), Postives = 94/175 (53.71%), Query Frame = 1
Query:    1 GYFCEEVTVAPEE--CPAGTYNPHYGGVSEEEDCLPCPAGSYC------EVASANITGVCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            GY+C +  + P    CP GTY    G V + + C+PCPAG YC       VA    TG C  G++CP G+  P    C   +Y  H  A ++ +C+ C  G YC T     P  CP G YC+ G  +P+PC PG+Y N  GL     CSPC  G YC   GLT+P+G C+AG+YC
Sbjct:  101 GYYCLQGNIDPNPRACPNGTYGDQEGLVDKSQ-CVPCPAGEYCYTEGTKPVAITQPTGRCPGGHYCPLGTGDPYTFPCAPGFYRTHSSAERKDNCSHCPPGHYCDTFGLEEPKVCPEGFYCIKGSKKPQPCEPGTYSNRIGLGAFSGCSPCGGGQYCTDEGLTQPTGYCKAGFYC 274          
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: UPI001EE5DD0F (LOW QUALITY PROTEIN: uncharacterized protein LOC124282469 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5DD0F)

HSP 1 Score: 149 bits (376), Expect = 1.580e-38
Identity = 75/171 (43.86%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    1 GYFCE--EVTVAPEECPAGTYNPHYGGVSEEEDCLPCPAGSYC--EVASANITGVCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            G++C   +V   P  CP GTYNP +G   +  DC+ C  GSYC  E  SA   G C  GY+CP G+  P    CP  +Y          DC  C SG YC      TP+ CP G +CV+G   P+PCP G+YGN++ LRR+ DC+PC  G YC G G  EP+  C AG+YC
Sbjct: 2718 GHYCPAGDVNPYPVPCPNGTYNPDFGR-KQVSDCVQCTPGSYCIPEGLSAPA-GDCPGGYYCPLGTGPPESYPCPIGFYRNGSARESFQDCTECISGFYCDREGLATPISCPRGFFCVSGSTFPQPCPLGTYGNSTELRRSTDCTPCPGGYYCDGIGRVEPTDVCDAGFYC 2886          
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: A0A401RYP6_CHIPU (Uncharacterized protein n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401RYP6_CHIPU)

HSP 1 Score: 148 bits (374), Expect = 2.870e-38
Identity = 71/175 (40.57%), Postives = 97/175 (55.43%), Query Frame = 1
Query:    1 GYFCEEVTVAPEE--CPAGTYNPHYGGVSEEEDCLPCPAGSYC------EVASANITGVCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            GY+C +  + P    CP GTY+   G V E + C+PCPAG YC       VA +  TG C  G++CP G+ +P    C   +Y +H  A ++  C+ C  G YC +     P  CP G YC+ G  +P+PC  G+Y +   LR   DC PC  G YCAG  LT+P+G C+AG+YC
Sbjct:  298 GYYCLQGNIDPNPRACPNGTYSDRKGLVDESQ-CVPCPAGKYCYSEGTKPVAISQPTGDCPGGHYCPLGTGNPHTFPCKPGFYLSHSAAEREESCSQCPPGYYCESFGLENPKVCPKGFYCILGSKQPQPCQRGTYSDKMSLRALSDCIPCGGGQYCAGESLTQPTGNCKAGFYC 471          
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: UPI000359E1C1 (uncharacterized protein LOC101861715 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359E1C1)

HSP 1 Score: 148 bits (373), Expect = 3.990e-38
Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = 1
Query:    1 GYFCEEVTVAPE--ECPAGTYNPHYGGVSEEEDCLPCPAGSYCEVASANI-TGVCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            GY+C    ++P   +CP GTYNP  G  + + DC+ C  G YC+    +   G C  G++CP G+ +     CP  +Y          DC  C SG YC       P++CP G +CV+G   P+PCP G+Y N++GLRR+ DC+PC  G YC G G TEP+G C  G+YC
Sbjct: 1768 GYYCPAGNISPYPVKCPIGTYNPDTGRKTVD-DCVQCTPGMYCDSEGLSAPAGDCPGGHYCPLGTGASTSFPCPIGFYRNSSARESFQDCTECISGYYCDVEGLAVPIDCPPGYFCVSGSITPQPCPLGTYSNSTGLRRSTDCTPCPGGQYCDGIGRTEPAGLCDPGFYC 1936          
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: UPI001B7E219B (SCO-spondin n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7E219B)

HSP 1 Score: 145 bits (367), Expect = 2.530e-37
Identity = 77/173 (44.51%), Postives = 94/173 (54.34%), Query Frame = 1
Query:    1 GYFCE--EVTVAPEECPAGTYNPHYGGVSEEEDCLPCPAGSYCEVASANI---TGVCARGYFCPEGSVSPMEREC-PAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            GY+C   ++   P  CP GTY+   G + E   C PCPAG YC   S  I   TG C  GY CP G+  P    C P  Y N+  G R ++ C  C +G YC + AT  P  CP G +CV G   PEPC  G+Y     LR   +C+PC  G YCAG GLTEP+G C AG+YC
Sbjct:  198 GYYCPGGDIDPNPRLCPNGTYSDRQG-LREVSACTPCPAGQYCFSKSQGISRPTGSCPSGYHCPVGTGYPYSFPCTPGSYRNSSLGHRGET-CQPCPAGFYCASQATEIPTICPRGYFCVEGSSSPEPCEEGTYSARPALRAGSECAPCVGGWYCAGVGLTEPTGSCEAGFYC 368          
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: A0A8B6FW71_MYTGA (Uncharacterized protein (Fragment) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FW71_MYTGA)

HSP 1 Score: 145 bits (365), Expect = 4.740e-37
Identity = 71/170 (41.76%), Postives = 94/170 (55.29%), Query Frame = 1
Query:    1 GYFCE--EVTVAPEECPAGTYNPHYGGVSEEEDCLPCPAGSYCEVASANI-TGVCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            G++C   +V   P  CP GT+N  YG +++  +C  C AG YC     +   G C  GY+CP G+  P    CP  +Y          DCA C SG YC       P++CP G +CV+G   P+PCP G+Y N++ LRRA DC+PC  G YC G G TEP+  C AG+YC
Sbjct: 1419 GHYCPRGDVNPYPVPCPNGTFNALYG-LTQVSECQQCTAGMYCIPEGLSTPAGDCPGGYYCPLGTGPPETYPCPIGFYRNGSAKESFQDCAECISGYYCDREGLALPIDCPAGYFCVSGSTFPQPCPLGTYSNSTKLRRATDCTPCPGGYYCDGIGRTEPTDVCDAGFYC 1587          
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: R7TS72_CAPTE (Chitin-binding type-2 domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TS72_CAPTE)

HSP 1 Score: 143 bits (360), Expect = 2.230e-36
Identity = 68/170 (40.00%), Postives = 91/170 (53.53%), Query Frame = 1
Query:    1 GYFCE--EVTVAPEECPAGTYNPHYGGVSEEEDCLPCPAGSYCEVASANI-TGVCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            G++C   +++  P  CP GT+N  YG + +  +C  C  G YC         G C+ GY+CP G+  P    CP  +Y          DCA CTSG YC       P +CP G +CV G   P+PCP G+Y N++ LRR  DC+PC  G YC G GLT P+  C AG++C
Sbjct: 1358 GHYCPRGDISPCPVPCPNGTFNEIYG-LMQVSECQQCTPGEYCIPEGLEAPAGPCSGGYYCPLGTGEPYSYPCPVGFYRNSSARESFQDCAECTSGYYCDVEGLAIPKDCPAGYFCVAGSTFPQPCPLGTYTNSTNLRRDTDCTPCPGGYYCDGIGLTSPTDVCDAGFFC 1526          
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: A0A2T7NFW9_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NFW9_POMCA)

HSP 1 Score: 143 bits (360), Expect = 2.230e-36
Identity = 69/170 (40.59%), Postives = 89/170 (52.35%), Query Frame = 1
Query:    1 GYFCE--EVTVAPEECPAGTYNPHYGGVSEEEDCLPCPAGSYCEVAS-ANITGVCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            GY+C    V   P+ CP GTYN   G +    DC+ C  G YC  +  +   G C  GY+CP G+       CP  +Y          DC  C SG YC       P+ CP G +CV+G   P+PCP G+Y N++GLRR+ DC+PC  G YC G G T P+G C  G+YC
Sbjct: 1729 GYYCPAGNVQPLPQPCPGGTYNAETGRM-RVSDCVQCTPGKYCYPSGLSQPAGDCPGGYYCPLGTAESNSFPCPIGFYRNGSAKESFEDCTECISGYYCDREGLAQPIACPPGYFCVSGSTFPQPCPLGTYSNSTGLRRSTDCTPCPGGYYCDGIGRTAPTGLCDPGFYC 1897          
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Match: UPI000D730558 (uncharacterized protein LOC112553744 isoform X1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D730558)

HSP 1 Score: 143 bits (360), Expect = 2.230e-36
Identity = 69/170 (40.59%), Postives = 89/170 (52.35%), Query Frame = 1
Query:    1 GYFCE--EVTVAPEECPAGTYNPHYGGVSEEEDCLPCPAGSYCEVAS-ANITGVCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNATVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCAGWGLTEPSGECRAGYYC 501
            GY+C    V   P+ CP GTYN   G +    DC+ C  G YC  +  +   G C  GY+CP G+       CP  +Y          DC  C SG YC       P+ CP G +CV+G   P+PCP G+Y N++GLRR+ DC+PC  G YC G G T P+G C  G+YC
Sbjct: 1729 GYYCPAGNVQPLPQPCPGGTYNAETGRM-RVSDCVQCTPGKYCYPSGLSQPAGDCPGGYYCPLGTAESNSFPCPIGFYRNGSAKESFEDCTECISGYYCDREGLAQPIACPPGYFCVSGSTFPQPCPLGTYSNSTGLRRSTDCTPCPGGYYCDGIGRTAPTGLCDPGFYC 1897          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126916.5423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00201FA0F33.350e-3942.35uncharacterized protein LOC124131564 isoform X1 n=... [more]
UPI0018F5A97B1.390e-3841.14multiple epidermal growth factor-like domains prot... [more]
UPI001EE5DD0F1.580e-3843.86LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
A0A401RYP6_CHIPU2.870e-3840.57Uncharacterized protein n=1 Tax=Chiloscyllium punc... [more]
UPI000359E1C13.990e-3840.59uncharacterized protein LOC101861715 n=1 Tax=Aplys... [more]
UPI001B7E219B2.530e-3744.51SCO-spondin n=1 Tax=Polyodon spathula TaxID=7913 R... [more]
A0A8B6FW71_MYTGA4.740e-3741.76Uncharacterized protein (Fragment) n=1 Tax=Mytilus... [more]
R7TS72_CAPTE2.230e-3640.00Chitin-binding type-2 domain-containing protein n=... [more]
A0A2T7NFW9_POMCA2.230e-3640.59Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
UPI000D7305582.230e-3640.59uncharacterized protein LOC112553744 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126916contigM-pyrifera_M_contig126916:3..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score149.1
Seed ortholog evalue1.9e-33
Seed eggNOG ortholog6500.XP_005092385.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.motor activity
EggNOG OGs39MQN@33154,3CPAR@33208,3E5FA@33213,COG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759
COG Functional cat.Z
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.1455567-CDS-M-pyrifera_M_contig126916:2..5031622815783.1455567-CDS-M-pyrifera_M_contig126916:2..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126916 3..503 -
1692277567.3089497-CDS-M-pyrifera_M_contig126916:2..5031692277567.3089497-CDS-M-pyrifera_M_contig126916:2..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126916 3..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126916.5423.1prot_M-pyrifera_M_contig126916.5423.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126916 3..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126916.5423.1

>prot_M-pyrifera_M_contig126916.5423.1 ID=prot_M-pyrifera_M_contig126916.5423.1|Name=mRNA_M-pyrifera_M_contig126916.5423.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
GYFCEEVTVAPEECPAGTYNPHYGGVSEEEDCLPCPAGSYCEVASANITG
VCARGYFCPEGSVSPMERECPAKYYNAHEGARKQSDCALCTSGDYCPTNA
TVTPVECPTGSYCVTGVDEPEPCPPGSYGNTSGLRRAEDCSPCQPGTYCA
GWGLTEPSGECRAGYYC
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mRNA from alignment at M-pyrifera_M_contig126916:3..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126916.5423.1 ID=mRNA_M-pyrifera_M_contig126916.5423.1|Name=mRNA_M-pyrifera_M_contig126916.5423.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig126916:3..503- (Macrocystis pyrifera P11B4 male)
GGGTATTTTTGTGAGGAAGTCACGGTAGCTCCAGAAGAATGCCCTGCTGG AACGTACAACCCTCATTATGGTGGTGTTTCGGAAGAAGAAGACTGCCTCC CATGTCCTGCAGGGTCTTACTGTGAAGTAGCGTCTGCCAACATTACAGGA GTTTGTGCCCGTGGGTATTTTTGCCCTGAAGGAAGTGTGTCTCCGATGGA AAGAGAATGTCCTGCAAAGTATTACAATGCCCATGAAGGAGCACGCAAAC AAAGTGACTGTGCATTGTGTACTTCTGGTGACTATTGCCCAACGAATGCA ACCGTGACACCAGTAGAATGTCCCACTGGTTCATATTGTGTCACAGGAGT GGATGAGCCAGAACCTTGTCCACCAGGGTCGTATGGAAATACATCTGGAT TAAGGCGTGCTGAAGATTGCTCCCCTTGTCAACCTGGAACCTATTGTGCT GGTTGGGGATTGACAGAACCATCTGGGGAATGTCGCGCTGGGTATTATTG T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126916:3..503-

>mRNA_M-pyrifera_M_contig126916.5423.1 ID=mRNA_M-pyrifera_M_contig126916.5423.1|Name=mRNA_M-pyrifera_M_contig126916.5423.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig126916:3..503- (Macrocystis pyrifera P11B4 male)
GGGTATTTTTGTGAGGAAGTCACGGTAGCTCCAGAAGAATGCCCTGCTGG
AACGTACAACCCTCATTATGGTGGTGTTTCGGAAGAAGAAGACTGCCTCC
CATGTCCTGCAGGGTCTTACTGTGAAGTAGCGTCTGCCAACATTACAGGA
GTTTGTGCCCGTGGGTATTTTTGCCCTGAAGGAAGTGTGTCTCCGATGGA
AAGAGAATGTCCTGCAAAGTATTACAATGCCCATGAAGGAGCACGCAAAC
AAAGTGACTGTGCATTGTGTACTTCTGGTGACTATTGCCCAACGAATGCA
ACCGTGACACCAGTAGAATGTCCCACTGGTTCATATTGTGTCACAGGAGT
GGATGAGCCAGAACCTTGTCCACCAGGGTCGTATGGAAATACATCTGGAT
TAAGGCGTGCTGAAGATTGCTCCCCTTGTCAACCTGGAACCTATTGTGCT
GGTTGGGGATTGACAGAACCATCTGGGGAATGTCGCGCTGGGTATTATTG
TGGGTATTTTTGTGAGGAAGTCACGGTAGCTCCAGAAGAATGCCCTGCTG
GAACGTACAACCCTCATTATGGTGGTGTTTCGGAAGAAGAAGACTGCCTC
CCATGTCCTGCAGGGTCTTACTGTGAAGTAGCGTCTGCCAACATTACAGG
AGTTTGTGCCCGTGGGTATTTTTGCCCTGAAGGAAGTGTGTCTCCGATGG
AAAGAGAATGTCCTGCAAAGTATTACAATGCCCATGAAGGAGCACGCAAA
CAAAGTGACTGTGCATTGTGTACTTCTGGTGACTATTGCCCAACGAATGC
AACCGTGACACCAGTAGAATGTCCCACTGGTTCATATTGTGTCACAGGAG
TGGATGAGCCAGAACCTTGTCCACCAGGGTCGTATGGAAATACATCTGGA
TTAAGGCGTGCTGAAGATTGCTCCCCTTGTCAACCTGGAACCTATTGTGC
TGGTTGGGGATTGACAGAACCATCTGGGGAATGTCGCGCTGGGTATTATT
GT
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