mRNA_M-pyrifera_M_contig126849.5400.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126849.5400.1
Unique NamemRNA_M-pyrifera_M_contig126849.5400.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A2P6NSS3_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NSS3_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 6.970e-13
Identity = 32/66 (48.48%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   25 MSFWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLIKLVVEE 222
            MSFW++F +N+G+AI++IL+ E +TLE+LL+E++I+ E K QNK+LI++  E  TL  L+  + EE
Sbjct:    1 MSFWKTFGFNTGTAIDSILDGEDYTLEQLLDEEEIIQETKAQNKRLIEFFVEPETLKKLLYYITEE 66          
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A8J5KX93_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KX93_ZINOF)

HSP 1 Score: 71.2 bits (173), Expect = 9.650e-13
Identity = 31/64 (48.44%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   31 FWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLIKLVVEE 222
            FWR  S++ GS + +IL+KE+FTLE+LL+ED+++ E K QN +LID+L E++ +  L++ +VEE
Sbjct:    2 FWRMSSFSQGSPVESILDKENFTLEDLLDEDEVIQECKAQNSRLIDFLKEKSQVEKLLRYIVEE 65          
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A5B7AZ71_DAVIN (Uncharacterized protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7AZ71_DAVIN)

HSP 1 Score: 67.4 bits (163), Expect = 1.190e-12
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   31 FWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLIKLVVEE 222
            FWR    ++ S + TIL+KE+FTLEELL+ED+I+ E K  N +LI++L ERA +  L++ +VEE
Sbjct:    2 FWRMAGLSTASPVETILDKENFTLEELLDEDEIIQECKALNSRLINFLRERAQVEQLLRYIVEE 65          
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A7S4PFK4_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PFK4_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-12
Identity = 33/60 (55.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:   25 MSFWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLI 204
            M+FWR+F +++ S + TILEK++FTLEELL+E+D+L E K+QN+KL+DYL    TL  L+
Sbjct:    1 MTFWRTFGFHTVSPVETILEKDNFTLEELLDEEDLLQECKSQNQKLLDYLLRVDTLDKLL 60          
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A453EZF4_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453EZF4_AEGTS)

HSP 1 Score: 68.9 bits (167), Expect = 2.150e-12
Identity = 36/74 (48.65%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    1 PRIYGAAKMSFWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLIKLVVEE 222
            PR   AA M FWR    ++ S ++TIL+KE+FTLEELL+ED+I+ E K  N +LI++L ++A +  L++ VVEE
Sbjct:   80 PRSTAAATM-FWRMTGLSAASPVDTILDKENFTLEELLDEDEIIQECKALNTRLINFLRDKAQVEQLLRYVVEE 152          
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A7J8Y6M6_GOSAI (Uncharacterized protein (Fragment) n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8Y6M6_GOSAI)

HSP 1 Score: 69.3 bits (168), Expect = 4.490e-12
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    4 RIYGAAKMSFWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLIKLVVEE 222
            R Y  AKM FWR   ++S S I+ IL+K++FTLEELL+ED+I+ E K+ N KLI++L E+A +  LI+ +V E
Sbjct:   69 RCYNLAKM-FWRMTGYSSTSPIDAILDKDNFTLEELLDEDEIIQECKSLNGKLINFLREKAQVEQLIQYIVVE 140          
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A453EZ10_AEGTS (Uncharacterized protein n=10 Tax=Poaceae TaxID=4479 RepID=A0A453EZ10_AEGTS)

HSP 1 Score: 68.9 bits (167), Expect = 6.210e-12
Identity = 36/74 (48.65%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    1 PRIYGAAKMSFWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLIKLVVEE 222
            PR   AA M FWR    ++ S ++TIL+KE+FTLEELL+ED+I+ E K  N +LI++L ++A +  L++ VVEE
Sbjct:   59 PRSTAAATM-FWRMTGLSAASPVDTILDKENFTLEELLDEDEIIQECKALNTRLINFLRDKAQVEQLLRYVVEE 131          
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A8J5V3C8_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5V3C8_ZIZPA)

HSP 1 Score: 65.9 bits (159), Expect = 7.840e-12
Identity = 31/64 (48.44%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   31 FWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLIKLVVEE 222
            FWR    ++ S ++TIL+KE+FTL+ELL+ED+I+ E K  N +LI++L +RA +  L++ VVEE
Sbjct:    2 FWRMTGLSAASPVDTILDKENFTLDELLDEDEIIQECKALNSRLINFLRDRAQVEQLLRYVVEE 65          
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A7S4IW04_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IW04_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 8.440e-12
Identity = 33/66 (50.00%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   25 MSFWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLIKLVVEE 222
            M+FWR++SW++ SAI+++L+ E  TLE+LL+E+DIL+E K QNKKLID+L + + L   +  V +E
Sbjct:    4 MAFWRTWSWDA-SAIDSLLDSEDLTLEQLLDENDILTEAKAQNKKLIDFLTKESNLLQFVSYVTDE 68          
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Match: A0A022RRT9_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RRT9_ERYGU)

HSP 1 Score: 68.6 bits (166), Expect = 8.520e-12
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   31 FWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYLYERATLGTLIKLVVEE 222
            FW    +++ SA+ TIL+KESFTLEELL+ED+I+ E K  N +L+ +L ERA +  LI+ ++EE
Sbjct:    2 FWHMSGFSAASAVETILDKESFTLEELLDEDEIIQECKAHNGRLVSFLRERAQVKQLIRYIMEE 65          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126849.5400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6NSS3_9EUKA6.970e-1348.48Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A8J5KX93_ZINOF9.650e-1348.44Uncharacterized protein n=3 Tax=Zingiber officinal... [more]
A0A5B7AZ71_DAVIN1.190e-1250.00Uncharacterized protein n=1 Tax=Davidia involucrat... [more]
A0A7S4PFK4_9EUKA1.300e-1255.00Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A453EZF4_AEGTS2.150e-1248.65Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A7J8Y6M6_GOSAI4.490e-1250.68Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]
A0A453EZ10_AEGTS6.210e-1248.65Uncharacterized protein n=10 Tax=Poaceae TaxID=447... [more]
A0A8J5V3C8_ZIZPA7.840e-1248.44Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A7S4IW04_9EUKA8.440e-1250.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A022RRT9_ERYGU8.520e-1250.00Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126849contigM-pyrifera_M_contig126849:9..345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.6
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog4155.Migut.H01336.1.p
KEGG koko:K15501
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SIT4 phosphatase-associated protein
EggNOG OGs37QVW@33090,3G88C@35493,44J24@71274,KOG2073@1,KOG2073@2759
COG Functional cat.D
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons2
Model size222
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126849.5400.1prot_M-pyrifera_M_contig126849.5400.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126849 9..321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.177474-CDS-M-pyrifera_M_contig126849:8..601622815782.177474-CDS-M-pyrifera_M_contig126849:8..60Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126849 9..60 -
1692277566.8188689-CDS-M-pyrifera_M_contig126849:8..601692277566.8188689-CDS-M-pyrifera_M_contig126849:8..60Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126849 9..60 -
1622815782.1876352-CDS-M-pyrifera_M_contig126849:175..3211622815782.1876352-CDS-M-pyrifera_M_contig126849:175..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126849 176..321 -
1692277566.832505-CDS-M-pyrifera_M_contig126849:175..3211692277566.832505-CDS-M-pyrifera_M_contig126849:175..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126849 176..321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.1988714-UTR-M-pyrifera_M_contig126849:321..3451622815782.1988714-UTR-M-pyrifera_M_contig126849:321..345Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126849 322..345 -
1692277566.842299-UTR-M-pyrifera_M_contig126849:321..3451692277566.842299-UTR-M-pyrifera_M_contig126849:321..345Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126849 322..345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126849.5400.1

>prot_M-pyrifera_M_contig126849.5400.1 ID=prot_M-pyrifera_M_contig126849.5400.1|Name=mRNA_M-pyrifera_M_contig126849.5400.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MSFWRSFSWNSGSAINTILEKESFTLEELLNEDDILSELKTQNKKLIDYL
YERATLGTLIKLVVEE
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mRNA from alignment at M-pyrifera_M_contig126849:9..345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126849.5400.1 ID=mRNA_M-pyrifera_M_contig126849.5400.1|Name=mRNA_M-pyrifera_M_contig126849.5400.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=337bp|location=Sequence derived from alignment at M-pyrifera_M_contig126849:9..345- (Macrocystis pyrifera P11B4 male)
CCTCGGATATACGGTGCAGCAAAGATGTCCTTCTGGAGGAGCTTCAGCTG GAACAGTGGCTCTGCCATCAACACAATTCTCGAGAAGGAGAGCTTCACTC TGGAGGAGCTTCTCAACGAGGATGACATCCTCTCCGAGCTGAAGACACAG AACAAGAAGCTGATCGACTAGTGCGCTCTCTACCTCTCCCCCTCCCTCTC TCTCTCTCTCTCCTCACTCTCCCCTCCCCCTCTCTCTCGCCAGCGCTGTC GCTTCGCCCCGGAGTGCGCTGCTGACGATGCTAAGCCTATACGAGCGGGC GACGCTGGGGACGCTCATAAAGTTGGTCGTCGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126849:9..345-

>mRNA_M-pyrifera_M_contig126849.5400.1 ID=mRNA_M-pyrifera_M_contig126849.5400.1|Name=mRNA_M-pyrifera_M_contig126849.5400.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig126849:9..345- (Macrocystis pyrifera P11B4 male)
ATGTCCTTCTGGAGGAGCTTCAGCTGGAACAGTGGCTCTGCCATCAACAC
AATTCTCGAGAAGGAGAGCTTCACTCTGGAGGAGCTTCTCAACGAGGATG
ACATCCTCTCCGAGCTGAAGACACAGAACAAGAAGCTGATCGACTAATGT
CCTTCTGGAGGAGCTTCAGCTGGAACAGTGGCTCTGCCATCAACACAATT
CTCGAGAAGGAGAGCTTCACTCTGGAGGAGCTTCTCAACGAGGATGACAT
CCTCTCCGAGCTGAAGACACAGAACAAGAAGCTGATCGACTACCTATACG
AGCGGGCGACGCTGGGGACGCTCATAAAGTTGGTCGTCGAGGAGCCTATA
CGAGCGGGCGACGCTGGGGACGCTCATAAAGTTGGTCGTCGAGGAG
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