mRNA_M-pyrifera_M_contig126821.5396.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126821.5396.1
Unique NamemRNA_M-pyrifera_M_contig126821.5396.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A3Q2XXI3_HIPCM (RB transcriptional corepressor like 1 n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XXI3_HIPCM)

HSP 1 Score: 99.8 bits (247), Expect = 8.480e-22
Identity = 55/127 (43.31%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:    4 PLHSPAPSKVTATPGGTSGTPGGAPRSRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 384
            PL +PAP    A     SG P    R+ SL LFF+KV  LA+VR++ L  R+++ + +   +W +F HAL+   Q++R+RHLDQ+++CT+Y + +  K E+ TF+ ++  YR QPQASS ++RSVLL
Sbjct:  704 PLPAPAPVAAPANAQPASGRP---QRTGSLALFFRKVYHLASVRLRDLCARLDISSELRAKIWTAFEHALLHATQLMRDRHLDQMLLCTVYIIAKITK-EAHTFQDIMKCYRSQPQASSHVYRSVLL 826
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A1A7YXB6_9TELE (Retinoblastoma-like 1 (p107) (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7YXB6_9TELE)

HSP 1 Score: 94.0 bits (232), Expect = 1.780e-20
Identity = 44/102 (43.14%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:   79 RSRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 384
            R+ S+ LFF+KV  LA+VR++ L  +++VP+ +   +W  F HAL+   +++++RHLDQ+++C++Y + R  K E+ TF+ ++  YR QPQASS ++RSVLL
Sbjct:   25 RTGSIALFFRKVYHLASVRLRDLCLKLDVPSELRGKIWTCFEHALVHCTELMKDRHLDQLLLCSIYIISRITK-EAHTFQDIMKYYRSQPQASSHVYRSVLL 125
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A671WKC9_SPAAU (RB transcriptional corepressor like 1 n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671WKC9_SPAAU)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-20
Identity = 52/131 (39.69%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:    4 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 390
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL +
Sbjct:  708 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLLRH 837
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A671WIN1_SPAAU (RB transcriptional corepressor like 1 n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671WIN1_SPAAU)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-20
Identity = 52/131 (39.69%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:    4 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 390
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL +
Sbjct:  731 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLLRH 860
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: UPI0011C19CDA (retinoblastoma-like protein 1 isoform X2 n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C19CDA)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-20
Identity = 52/131 (39.69%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:    4 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 390
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL +
Sbjct:  747 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLLRH 876
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A671WH22_SPAAU (RB transcriptional corepressor like 1 n=16 Tax=Percomorphaceae TaxID=1489872 RepID=A0A671WH22_SPAAU)

HSP 1 Score: 95.5 bits (236), Expect = 2.600e-20
Identity = 52/131 (39.69%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:    4 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 390
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL +
Sbjct:  814 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLLRH 943
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A671WHF5_SPAAU (RB transcriptional corepressor like 1 n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671WHF5_SPAAU)

HSP 1 Score: 95.1 bits (235), Expect = 3.500e-20
Identity = 52/129 (40.31%), Postives = 85/129 (65.89%), Query Frame = 1 
Query:    4 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 384
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL
Sbjct:  689 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLL 816
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A1A7WSP5_9TELE (Retinoblastoma-like 1 (p107) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7WSP5_9TELE)

HSP 1 Score: 94.0 bits (232), Expect = 6.900e-20
Identity = 44/102 (43.14%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:   79 RSRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 384
            R+ S+ LFF+KV  LA+VR++ L  +++VP+ +   +W  F HAL+   +++++RHLDQ+++C++Y + R  K E+ TF+ ++  YR QPQASS ++RSVLL
Sbjct:  195 RTGSIALFFRKVYHLASVRLRDLCLKLDVPSELRGKIWTCFEHALVHCTELMKDRHLDQLLLCSIYIISRITK-EAHTFQDIMKYYRSQPQASSHVYRSVLL 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A2D0SED0_ICTPU (retinoblastoma-like protein 2 isoform X1 n=13 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0SED0_ICTPU)

HSP 1 Score: 94.0 bits (232), Expect = 8.950e-20
Identity = 45/109 (41.28%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:   58 GTPGGAPRSRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 384
            GTP  A R+ SL LFF+KV  LA+VR++ L  ++++   +    W  F ++L+   +++ NRHLDQ++MC +Y + +  K E  +F+ ++  YR QPQASSS++RSVL+
Sbjct:  761 GTPNRAQRTGSLSLFFRKVYHLASVRLRDLCVKLDISTDLRRKTWTCFEYSLVHCTELMMNRHLDQLLMCAIYVMAKVTK-EDKSFQNIMKCYRSQPQASSSVYRSVLI 868
[Close]
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A8C3AGP3_CYCLU (Retinoblastoma-like 1 (p107) n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3AGP3_CYCLU)

HSP 1 Score: 93.6 bits (231), Expect = 1.210e-19
Identity = 54/132 (40.91%), Postives = 85/132 (64.39%), Query Frame = 1 
Query:    4 PLHSPAPSKVTATPGGTSGTPGGAPRSR---SLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 390
            P+ SPA S+  A    TS    G+ R R   SL LFF+KV  LA+VR++ L  +M+VP+ +   +W  F H+L+    ++R+RHLDQ+++C++Y + +  K E+ +F  ++  YR QPQASS ++RSVLL +
Sbjct:  628 PMTSPAKSRAAAP--ATSDPQAGSARPRRTGSLALFFRKVYHLASVRLRDLCVKMDVPSELRGKIWTCFEHSLVHSTGLMRDRHLDQLLLCSVYIISKITK-ETHSFHDIMKCYRSQPQASSHVYRSVLLRH 756
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q2XXI3_HIPCM8.480e-2243.31RB transcriptional corepressor like 1 n=1 Tax=Hipp... [more]
A0A1A7YXB6_9TELE1.780e-2043.14Retinoblastoma-like 1 (p107) (Fragment) n=1 Tax=Ic... [more]
A0A671WKC9_SPAAU2.580e-2039.69RB transcriptional corepressor like 1 n=1 Tax=Spar... [more]
A0A671WIN1_SPAAU2.580e-2039.69RB transcriptional corepressor like 1 n=1 Tax=Spar... [more]
UPI0011C19CDA2.580e-2039.69retinoblastoma-like protein 1 isoform X2 n=1 Tax=S... [more]
A0A671WH22_SPAAU2.600e-2039.69RB transcriptional corepressor like 1 n=16 Tax=Per... [more]
A0A671WHF5_SPAAU3.500e-2040.31RB transcriptional corepressor like 1 n=1 Tax=Spar... [more]
A0A1A7WSP5_9TELE6.900e-2043.14Retinoblastoma-like 1 (p107) n=1 Tax=Iconisemion s... [more]
A0A2D0SED0_ICTPU8.950e-2041.28retinoblastoma-like protein 2 isoform X1 n=13 Tax=... [more]
A0A8C3AGP3_CYCLU1.210e-1940.91Retinoblastoma-like 1 (p107) n=1 Tax=Cyclopterus l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126821contigM-pyrifera_M_contig126821:119..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog529818.AMSG_01185T0
Preferred nameRB1
KEGG koko:K04681,ko:K06618
KEGG Pathwayko01522,ko04110,ko04218,ko04350,ko04934,ko05161,ko05165,ko05166,ko05167,ko05169,ko05200,ko05203,ko05212,ko05214,ko05215,ko05218,ko05219,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map01522,map04110,map04218,map04350,map04934,map05161,map05165,map05166,map05167,map05169,map05200,map05203,map05212,map05214,map05215,map05218,map05219,map05220,map05222,map05223,map05224,map05225,map05226
KEGG ModuleM00692
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000082,GO:0000083,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0000902,GO:0000904,GO:0000976,GO:0000987,GO:0001047,GO:0001067,GO:0001085,GO:0001102,GO:0001558,GO:0001894,GO:0001932,GO:0001933,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002761,GO:0002763,GO:0003170,GO:0003176,GO:0003179,GO:0003180,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005819,GO:0005856,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006469,GO:0006915,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007093,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007507,GO:0007517,GO:0007519,GO:0008104,GO:0008134,GO:0008150,GO:0008219,GO:0008285,GO:0008589,GO:0008608,GO:0009410,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010389,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010965,GO:0012501,GO:0014070,GO:0014706,GO:0015630,GO:0016043,GO:0016514,GO:0016604,GO:0016605,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019904,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030071,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030218,GO:0030518,GO:0030521,GO:0030522,GO:0031134,GO:0031156,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031331,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031625,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032102,GO:0032103,GO:0032268,GO:0032269,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0033613,GO:0033673,GO:0033993,GO:0034086,GO:0034088,GO:0034101,GO:0034349,GO:0034502,GO:0034613,GO:0035189,GO:0035257,GO:0035258,GO:0035295,GO:0035556,GO:0035914,GO:0040008,GO:0040012,GO:0040017,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042551,GO:0042592,GO:0042692,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043353,GO:0043388,GO:0043393,GO:0043401,GO:0043433,GO:0043549,GO:0043550,GO:0043565,GO:0043900,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044798,GO:0044843,GO:0045165,GO:0045445,GO:0045595,GO:0045596,GO:0045597,GO:0045637,GO:0045639,GO:0045649,GO:0045651,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045859,GO:0045862,GO:0045879,GO:0045892,GO:0045893,GO:0045930,GO:0045931,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048565,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0050678,GO:0050680,GO:0050681,GO:0050727,GO:0050728,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051090,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051338,GO:0051348,GO:0051402,GO:0051427,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055123,GO:0060249,GO:0060255,GO:0060341,GO:0060537,GO:0060538,GO:0060548,GO:0061061,GO:0061676,GO:0062033,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070603,GO:0070727,GO:0070887,GO:0070997,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071459,GO:0071466,GO:0071495,GO:0071695,GO:0071840,GO:0071922,GO:0071930,GO:0072359,GO:0080090,GO:0080134,GO:0090068,GO:0090230,GO:0090575,GO:0097159,GO:0097284,GO:0097718,GO:0098813,GO:0120036,GO:0140014,GO:0140110,GO:1900120,GO:1900122,GO:1901363,GO:1901800,GO:1901970,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902099,GO:1902101,GO:1902105,GO:1902107,GO:1902494,GO:1902679,GO:1902680,GO:1902749,GO:1902806,GO:1902807,GO:1902903,GO:1902905,GO:1903047,GO:1903052,GO:1903053,GO:1903055,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1903706,GO:1903708,GO:1903827,GO:1903943,GO:1903944,GO:1904019,GO:1904026,GO:1904028,GO:1904035,GO:1904036,GO:1904760,GO:1904761,GO:1904949,GO:1905314,GO:1905634,GO:1905818,GO:1905820,GO:1990837,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000677,GO:2000679,GO:2001141,GO:2001252
EggNOG free text desc.regulation of cell cycle
EggNOG OGsKOG1010@1,KOG1010@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03000
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.0342686-CDS-M-pyrifera_M_contig126821:118..5081622815782.0342686-CDS-M-pyrifera_M_contig126821:118..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126821 119..508 +
1692277566.7511723-CDS-M-pyrifera_M_contig126821:118..5081692277566.7511723-CDS-M-pyrifera_M_contig126821:118..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126821 119..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126821.5396.1prot_M-pyrifera_M_contig126821.5396.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126821 119..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126821.5396.1

>prot_M-pyrifera_M_contig126821.5396.1 ID=prot_M-pyrifera_M_contig126821.5396.1|Name=mRNA_M-pyrifera_M_contig126821.5396.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
TPLHSPAPSKVTATPGGTSGTPGGAPRSRSLELFFKKVLSLANVRMQQLF
KRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKL
ESVTFRKMLDGYRHQPQASSSLWRSVLLEN
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mRNA from alignment at M-pyrifera_M_contig126821:119..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126821.5396.1 ID=mRNA_M-pyrifera_M_contig126821.5396.1|Name=mRNA_M-pyrifera_M_contig126821.5396.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig126821:119..508+ (Macrocystis pyrifera P11B4 male)
ACTCCCCTCCACTCTCCTGCTCCCTCCAAGGTTACCGCCACTCCAGGAGG
CACCAGCGGCACACCAGGAGGCGCCCCACGCTCGAGATCGCTGGAGCTCT
TCTTCAAGAAGGTGCTGAGCCTGGCGAACGTGCGCATGCAGCAGCTCTTC
AAGCGGATGGAGGTACCGGCCGGGATCTACCACCATCTGTGGTTTTCCTT
TGTGCACGCATTGATCTGGTTCCCCCAGATCATCAGGAACCGTCACCTCG
ACCAGGTGATCATGTGTACGCTCTATGGAGTGTGTAGGGCCAACAAGCTC
GAGAGCGTCACCTTCAGGAAGATGCTCGACGGCTATCGTCATCAGCCGCA
GGCCTCGAGCTCTCTGTGGCGCAGTGTGTTGTTGGAGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126821:119..508+

>mRNA_M-pyrifera_M_contig126821.5396.1 ID=mRNA_M-pyrifera_M_contig126821.5396.1|Name=mRNA_M-pyrifera_M_contig126821.5396.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig126821:119..508+ (Macrocystis pyrifera P11B4 male)
ACTCCCCTCCACTCTCCTGCTCCCTCCAAGGTTACCGCCACTCCAGGAGG
CACCAGCGGCACACCAGGAGGCGCCCCACGCTCGAGATCGCTGGAGCTCT
TCTTCAAGAAGGTGCTGAGCCTGGCGAACGTGCGCATGCAGCAGCTCTTC
AAGCGGATGGAGGTACCGGCCGGGATCTACCACCATCTGTGGTTTTCCTT
TGTGCACGCATTGATCTGGTTCCCCCAGATCATCAGGAACCGTCACCTCG
ACCAGGTGATCATGTGTACGCTCTATGGAGTGTGTAGGGCCAACAAGCTC
GAGAGCGTCACCTTCAGGAAGATGCTCGACGGCTATCGTCATCAGCCGCA
GGCCTCGAGCTCTCTGTGGCGCAGTGTGTTGTTGGAGAACACTCCCCTCC
ACTCTCCTGCTCCCTCCAAGGTTACCGCCACTCCAGGAGGCACCAGCGGC
ACACCAGGAGGCGCCCCACGCTCGAGATCGCTGGAGCTCTTCTTCAAGAA
GGTGCTGAGCCTGGCGAACGTGCGCATGCAGCAGCTCTTCAAGCGGATGG
AGGTACCGGCCGGGATCTACCACCATCTGTGGTTTTCCTTTGTGCACGCA
TTGATCTGGTTCCCCCAGATCATCAGGAACCGTCACCTCGACCAGGTGAT
CATGTGTACGCTCTATGGAGTGTGTAGGGCCAACAAGCTCGAGAGCGTCA
CCTTCAGGAAGATGCTCGACGGCTATCGTCATCAGCCGCAGGCCTCGAGC
TCTCTGTGGCGCAGTGTGTTGTTGGAGAAC
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