prot_M-pyrifera_M_contig126821.5396.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig126821.5396.1
Unique Nameprot_M-pyrifera_M_contig126821.5396.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length130
Homology
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A3Q2XXI3_HIPCM (RB transcriptional corepressor like 1 n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XXI3_HIPCM)

HSP 1 Score: 99.8 bits (247), Expect = 8.480e-22
Identity = 55/127 (43.31%), Postives = 84/127 (66.14%), Query Frame = 0
Query:    2 PLHSPAPSKVTATPGGTSGTPGGAPRSRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 128
            PL +PAP    A     SG P    R+ SL LFF+KV  LA+VR++ L  R+++ + +   +W +F HAL+   Q++R+RHLDQ+++CT+Y + +  K E+ TF+ ++  YR QPQASS ++RSVLL
Sbjct:  704 PLPAPAPVAAPANAQPASGRP---QRTGSLALFFRKVYHLASVRLRDLCARLDISSELRAKIWTAFEHALLHATQLMRDRHLDQMLLCTVYIIAKITK-EAHTFQDIMKCYRSQPQASSHVYRSVLL 826          
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A1A7YXB6_9TELE (Retinoblastoma-like 1 (p107) (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7YXB6_9TELE)

HSP 1 Score: 94.0 bits (232), Expect = 1.780e-20
Identity = 44/102 (43.14%), Postives = 74/102 (72.55%), Query Frame = 0
Query:   27 RSRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 128
            R+ S+ LFF+KV  LA+VR++ L  +++VP+ +   +W  F HAL+   +++++RHLDQ+++C++Y + R  K E+ TF+ ++  YR QPQASS ++RSVLL
Sbjct:   25 RTGSIALFFRKVYHLASVRLRDLCLKLDVPSELRGKIWTCFEHALVHCTELMKDRHLDQLLLCSIYIISRITK-EAHTFQDIMKYYRSQPQASSHVYRSVLL 125          
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A671WKC9_SPAAU (RB transcriptional corepressor like 1 n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671WKC9_SPAAU)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-20
Identity = 52/131 (39.69%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    2 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 130
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL +
Sbjct:  708 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLLRH 837          
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A671WIN1_SPAAU (RB transcriptional corepressor like 1 n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671WIN1_SPAAU)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-20
Identity = 52/131 (39.69%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    2 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 130
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL +
Sbjct:  731 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLLRH 860          
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: UPI0011C19CDA (retinoblastoma-like protein 1 isoform X2 n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C19CDA)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-20
Identity = 52/131 (39.69%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    2 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 130
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL +
Sbjct:  747 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLLRH 876          
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A671WH22_SPAAU (RB transcriptional corepressor like 1 n=16 Tax=Percomorphaceae TaxID=1489872 RepID=A0A671WH22_SPAAU)

HSP 1 Score: 95.5 bits (236), Expect = 2.600e-20
Identity = 52/131 (39.69%), Postives = 86/131 (65.65%), Query Frame = 0
Query:    2 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 130
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL +
Sbjct:  814 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLLRH 943          
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A671WHF5_SPAAU (RB transcriptional corepressor like 1 n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671WHF5_SPAAU)

HSP 1 Score: 95.1 bits (235), Expect = 3.500e-20
Identity = 52/129 (40.31%), Postives = 85/129 (65.89%), Query Frame = 0
Query:    2 PLHSPAPSKVTATPGGTSGTPG-GAPR-SRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 128
            P  + +PS+VT+ P  +   PG G PR + SL LFF+KV  LA+VR++ L  ++++P+ +   +W  F H L+    +++ RHLDQ+++C++Y + +  K E+ TF  ++  YR QPQASS ++RSVLL
Sbjct:  689 PHRTASPSRVTSAPTTSDPPPGTGRPRRTGSLALFFRKVYHLASVRLRDLCVKLDIPSELRGKIWTCFEHTLVHSTDLMKGRHLDQLLLCSVYIISKITK-ETHTFHDIMKCYRSQPQASSHVYRSVLL 816          
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A1A7WSP5_9TELE (Retinoblastoma-like 1 (p107) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7WSP5_9TELE)

HSP 1 Score: 94.0 bits (232), Expect = 6.900e-20
Identity = 44/102 (43.14%), Postives = 74/102 (72.55%), Query Frame = 0
Query:   27 RSRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 128
            R+ S+ LFF+KV  LA+VR++ L  +++VP+ +   +W  F HAL+   +++++RHLDQ+++C++Y + R  K E+ TF+ ++  YR QPQASS ++RSVLL
Sbjct:  195 RTGSIALFFRKVYHLASVRLRDLCLKLDVPSELRGKIWTCFEHALVHCTELMKDRHLDQLLLCSIYIISRITK-EAHTFQDIMKYYRSQPQASSHVYRSVLL 295          
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A2D0SED0_ICTPU (retinoblastoma-like protein 2 isoform X1 n=13 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0SED0_ICTPU)

HSP 1 Score: 94.0 bits (232), Expect = 8.950e-20
Identity = 45/109 (41.28%), Postives = 73/109 (66.97%), Query Frame = 0
Query:   20 GTPGGAPRSRSLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLL 128
            GTP  A R+ SL LFF+KV  LA+VR++ L  ++++   +    W  F ++L+   +++ NRHLDQ++MC +Y + +  K E  +F+ ++  YR QPQASSS++RSVL+
Sbjct:  761 GTPNRAQRTGSLSLFFRKVYHLASVRLRDLCVKLDISTDLRRKTWTCFEYSLVHCTELMMNRHLDQLLMCAIYVMAKVTK-EDKSFQNIMKCYRSQPQASSSVYRSVLI 868          
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Match: A0A8C3AGP3_CYCLU (Retinoblastoma-like 1 (p107) n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3AGP3_CYCLU)

HSP 1 Score: 93.6 bits (231), Expect = 1.210e-19
Identity = 54/132 (40.91%), Postives = 85/132 (64.39%), Query Frame = 0
Query:    2 PLHSPAPSKVTATPGGTSGTPGGAPRSR---SLELFFKKVLSLANVRMQQLFKRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKLESVTFRKMLDGYRHQPQASSSLWRSVLLEN 130
            P+ SPA S+  A    TS    G+ R R   SL LFF+KV  LA+VR++ L  +M+VP+ +   +W  F H+L+    ++R+RHLDQ+++C++Y + +  K E+ +F  ++  YR QPQASS ++RSVLL +
Sbjct:  628 PMTSPAKSRAAAP--ATSDPQAGSARPRRTGSLALFFRKVYHLASVRLRDLCVKMDVPSELRGKIWTCFEHSLVHSTGLMRDRHLDQLLLCSVYIISKITK-ETHSFHDIMKCYRSQPQASSHVYRSVLLRH 756          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126821.5396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q2XXI3_HIPCM8.480e-2243.31RB transcriptional corepressor like 1 n=1 Tax=Hipp... [more]
A0A1A7YXB6_9TELE1.780e-2043.14Retinoblastoma-like 1 (p107) (Fragment) n=1 Tax=Ic... [more]
A0A671WKC9_SPAAU2.580e-2039.69RB transcriptional corepressor like 1 n=1 Tax=Spar... [more]
A0A671WIN1_SPAAU2.580e-2039.69RB transcriptional corepressor like 1 n=1 Tax=Spar... [more]
UPI0011C19CDA2.580e-2039.69retinoblastoma-like protein 1 isoform X2 n=1 Tax=S... [more]
A0A671WH22_SPAAU2.600e-2039.69RB transcriptional corepressor like 1 n=16 Tax=Per... [more]
A0A671WHF5_SPAAU3.500e-2040.31RB transcriptional corepressor like 1 n=1 Tax=Spar... [more]
A0A1A7WSP5_9TELE6.900e-2043.14Retinoblastoma-like 1 (p107) n=1 Tax=Iconisemion s... [more]
A0A2D0SED0_ICTPU8.950e-2041.28retinoblastoma-like protein 2 isoform X1 n=13 Tax=... [more]
A0A8C3AGP3_CYCLU1.210e-1940.91Retinoblastoma-like 1 (p107) n=1 Tax=Cyclopterus l... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 5..130
e-value: 1.9E-31
score: 111.0
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..58
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 79..130
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..78
IPR002719Retinoblastoma-associated protein, B-boxPFAMPF01857RB_Bcoord: 30..129
e-value: 1.7E-26
score: 92.8
IPR028309Retinoblastoma protein familyPANTHERPTHR13742RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATEDcoord: 18..129
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 30..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126821contigM-pyrifera_M_contig126821:119..508 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126821.5396.1mRNA_M-pyrifera_M_contig126821.5396.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig126821 119..508 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig126821.5396.1 ID=prot_M-pyrifera_M_contig126821.5396.1|Name=mRNA_M-pyrifera_M_contig126821.5396.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
TPLHSPAPSKVTATPGGTSGTPGGAPRSRSLELFFKKVLSLANVRMQQLF
KRMEVPAGIYHHLWFSFVHALIWFPQIIRNRHLDQVIMCTLYGVCRANKL
ESVTFRKMLDGYRHQPQASSSLWRSVLLEN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002719RB_B
IPR028309RB_fam
IPR036915Cyclin-like_sf