mRNA_M-pyrifera_M_contig126809.5391.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI00167FE9E0 (sensor histidine kinase n=1 Tax=Pedobacter sp. SW-16 TaxID=2766984 RepID=UPI00167FE9E0) HSP 1 Score: 57.0 bits (136), Expect = 8.290e-7 Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1
Query: 106 NVYPIYEDHEGVIWAGILRAELVSIS--NSKAEVFNNMEAIPSNRFFSFLEDEANEMWMGTSVGLFKWDRKS 315
N+ I +D EG IW G L ++ N E+FN +PS+ S +ED N +W+GT GL K+DRK+
Sbjct: 547 NINCIQQDSEGNIWLGTYHKGLALLNQRNKTFELFNYKNNLPSDNILSLVEDNQNNLWIGTDNGLVKYDRKA 618
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI001ADA5544 (response regulator n=1 Tax=Niastella soli TaxID=2821487 RepID=UPI001ADA5544) HSP 1 Score: 57.0 bits (136), Expect = 8.440e-7 Identity = 42/143 (29.37%), Postives = 72/143 (50.35%), Query Frame = 1
Query: 1 FVDKTGALWFVSVGE--LHYIQRDTFGAYDMQTHNIENVYPIYEDHEGVIWAG----ILRAELVSISNSKAEVFNNMEAIPSNRFFSFLEDEANEMWMGTSVG-LFKWDRKSNIKEVKPF---EDTELKFVRGLIKDRNGSIW 399
F D LW + G L+Y+ R+ ++M + ++ ++ IY+D +GV+WAG ++R + + + E+ + AI LED A MW+G G L +DR+S K VK F + V +++D NG++W
Sbjct: 468 FEDTNKVLWATTFGNGMLYYLNREK-DRFEMFSQHLVDLLSIYQDKDGVLWAGTAHDLIRIDRADKKHVRYEIGKPVRAI--------LEDRAGNMWIGAEGGGLILFDRQSG-KLVKRFTVKDGLSNNGVLNILEDGNGNLW 600
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: A0A6N3B4Z1_9FIRM (Histidine kinase n=10 Tax=root TaxID=1 RepID=A0A6N3B4Z1_9FIRM) HSP 1 Score: 55.5 bits (132), Expect = 2.850e-6 Identity = 40/123 (32.52%), Postives = 59/123 (47.97%), Query Frame = 1
Query: 4 VDKTGALWFVSVGELHYIQRDTFGAYDMQTHNIENVY--PIYEDHEGVIWAGILRAE---LVSISNSKAEVFNN----MEAIPSNRFFSFLEDEANEMWMGTSVGLFKWDRKSNIKEVKPFED 345
VD G LW ++ L I +T DM + Y IY+D+EG + G+LR E +++ K + F+N +I SNR D +W+GTS G+ K+DRK+ E ED
Sbjct: 464 VDDKGYLWAGTINGLSIINIETEEIIDMTKYIDTEKYIKHIYQDNEGNYYLGLLRDEGLCYINVKQKKIKYFSNDKSDKSSISSNRVRYINGDSKGNVWIGTSYGINKFDRKTETFERYTAED 586
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI000D10A66F (response regulator n=1 Tax=Parabacteroides pacaensis TaxID=2086575 RepID=UPI000D10A66F) HSP 1 Score: 52.8 bits (125), Expect = 2.520e-5 Identity = 36/147 (24.49%), Postives = 70/147 (47.62%), Query Frame = 1
Query: 7 DKTGALWFVSVGELHYIQRDTFGAYDMQTHNIENVYP----------IYEDHEGVIWAGILRA-ELVSISNSKAEVFNNMEAIPSNRFFSFLEDEANEMWMGTSVGLFKWDRKSN---IKEVKPFEDTEL--KFVRGLIKDRNGSIW 399
D G +WF + L + Y ++ + + N P + ED + IW G + ++ + K + +N +++P+ FL + +W+GT VGL +++RKSN + + +P + T + +R L++D+ G IW
Sbjct: 48 DSEGYMWFATSNGLC-----RYNGYTLKMYKLSNQAPNLLQSNIVNTMIEDIDRRIWIGTEQGINILDRTTDKLQTISN-DSLPNPYIHCFLLTSDSTLWVGTQVGLLRYNRKSNNFTVYKNRPNDSTSICGNSIRALLEDKAGYIW 188
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI0019869061 (Uncharacterized protein n=1 Tax=Ferruginibacter sp. TaxID=1940288 RepID=UPI0019869061) HSP 1 Score: 51.6 bits (122), Expect = 6.300e-5 Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 121 YEDHEGVIWAGILRAELVSISNSKAEVFNNMEAIPSNRFF-SFLEDEANEMWMGTSVGLFKWDRKSNIKEVKPFED--TELKFVRGLIKDRNGSIW 399
+ HEGV+W G + +L + + N+ I + +F E++ N +WMGTS GL ++DRK+ I F D + +V + KD NG+IW
Sbjct: 374 FTSHEGVLWVGSWQEDLYYMDPLQ----KNIPFISTGYTVRAFCEEDKNVLWMGTSEGLIRYDRKTGITN-HFFSDYANDNFYVAKIYKDYNGTIW 464
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Match: UPI0013CF7419 (response regulator n=1 Tax=Bacteroides sp. 224 TaxID=2302936 RepID=UPI0013CF7419) HSP 1 Score: 51.6 bits (122), Expect = 6.360e-5 Identity = 33/99 (33.33%), Postives = 58/99 (58.59%), Query Frame = 1
Query: 118 IYEDHEGVIWAG----ILRAELVSISNSKAEVFNNMEAIPSNRFFSFLEDEANEMWMGTSVGLFKWDRKS-NIKEVKPFEDTELKFVRGLIKDRNGSIW 399
I +D +G IW G ++R + I+N+KA+V+ N+ +I S +E +AN MW+GT+ GLF ++ S N +E+K TE ++ L + +N ++
Sbjct: 451 IVKDSQGHIWIGGYHNLIR---IDIANNKAQVYPNINSITS-----VIEKDANNMWVGTTKGLFLINKTSGNTQELKLL--TESNYIYSLCQTKNNRLY 539 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126809.5391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig126809.5391.1 >prot_M-pyrifera_M_contig126809.5391.1 ID=prot_M-pyrifera_M_contig126809.5391.1|Name=mRNA_M-pyrifera_M_contig126809.5391.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp FVDKTGALWFVSVGELHYIQRDTFGAYDMQTHNIENVYPIYEDHEGVIWAback to top mRNA from alignment at M-pyrifera_M_contig126809:42..440+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig126809.5391.1 ID=mRNA_M-pyrifera_M_contig126809.5391.1|Name=mRNA_M-pyrifera_M_contig126809.5391.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig126809:42..440+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig126809:42..440+ >mRNA_M-pyrifera_M_contig126809.5391.1 ID=mRNA_M-pyrifera_M_contig126809.5391.1|Name=mRNA_M-pyrifera_M_contig126809.5391.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig126809:42..440+ (Macrocystis pyrifera P11B4 male)back to top |