mRNA_M-pyrifera_M_contig102516.539.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102516.539.1
Unique NamemRNA_M-pyrifera_M_contig102516.539.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: D7FIS1_ECTSI (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS1_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 9.400e-24
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 VIGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 153
            VIG+ PDVG AHVLSRLPGGLGQYLGLTGARLRG+DLL+CGLATHLVPRDR
Sbjct:  163 VIGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDR 213
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: A0A2K1JC01_PHYPA (ECH_2 domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JC01_PHYPA)

HSP 1 Score: 76.6 bits (187), Expect = 4.520e-15
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    4 IGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 153
            IG+ PDVGA++ LSRLPG LG+YLGLTG+RL G DLL CGLATH VP  R
Sbjct:  186 IGLHPDVGASYFLSRLPGHLGEYLGLTGSRLDGADLLSCGLATHFVPSQR 235
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: A0A0V1G7Y7_9BILA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial (Fragment) n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0V1G7Y7_9BILA)

HSP 1 Score: 71.2 bits (173), Expect = 6.430e-15
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 IGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVP 144
            +G+ PDVGA++ LSRLPG  G+Y+GLTGARL G ++L CGLATH VP
Sbjct:   45 LGLFPDVGASYYLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVP 91
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: A0A3A9JDH4_9PROT (Enoyl-CoA hydratase/isomerase family protein n=2 Tax=Acetobacteraceae TaxID=433 RepID=A0A3A9JDH4_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-14
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    4 IGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRD 150
            IG+ PD+GA++VLSR+PG LG +LGLTGAR+RG + + CG ATH VPRD
Sbjct:  143 IGLFPDIGASYVLSRMPGALGFWLGLTGARMRGAEAVECGFATHFVPRD 191
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: A0A6P6G047_ZIZJJ (3-hydroxyisobutyryl-CoA hydrolase 1-like n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6G047_ZIZJJ)

HSP 1 Score: 74.3 bits (181), Expect = 1.250e-14
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 IGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVP 144
            IG+ PDVGA H LS+LPG  G+Y+GLTGAR++G ++L CGLATH VP
Sbjct:   87 IGLFPDVGATHFLSKLPGHFGEYIGLTGARIKGAEMLACGLATHFVP 133
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: UPI0020254809 (3-hydroxyisobutyryl-CoA hydrolase 1-like n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI0020254809)

HSP 1 Score: 74.3 bits (181), Expect = 1.630e-14
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 IGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVP 144
            IG+ PDVGA H LS+LPG  G+Y+GLTGAR++G ++L CGLATH VP
Sbjct:  145 IGLFPDVGATHFLSKLPGHFGEYIGLTGARIKGAEMLACGLATHFVP 191
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: UPI0010A5647B (3-hydroxyisobutyryl-CoA hydrolase 1-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A5647B)

HSP 1 Score: 73.6 bits (179), Expect = 1.780e-14
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    4 IGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 153
            IG+ PDVGA++ LSRLPG  G+YLGLTG RL G++++ CGLATH VP ++
Sbjct:   39 IGLFPDVGASYFLSRLPGYFGEYLGLTGRRLNGEEMVKCGLATHFVPSEK 88
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: R0HG14_9BRAS (ECH_2 domain-containing protein n=2 Tax=Capsella rubella TaxID=81985 RepID=R0HG14_9BRAS)

HSP 1 Score: 74.7 bits (182), Expect = 2.000e-14
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    4 IGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 153
            +G+ PDVGA+H LSRLPG  G+Y+GLTGARL G ++L CGLATH VP  R
Sbjct:  141 LGLFPDVGASHFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSTR 190
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: A0A7J7DU34_TRIWF (Beta-hydroxyisobutyryl-CoA hydrolase 1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DU34_TRIWF)

HSP 1 Score: 72.4 bits (176), Expect = 2.010e-14
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    4 IGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLV 141
            IG+ PDVGA+H LSRLPG  G+YLGLTGARL G ++L CGLATH V
Sbjct:  105 IGLFPDVGASHFLSRLPGYFGEYLGLTGARLDGAEMLECGLATHFV 150
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BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Match: UPI000B900D9C (3-hydroxyisobutyryl-CoA hydrolase 1-like n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B900D9C)

HSP 1 Score: 70.9 bits (172), Expect = 2.750e-14
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    4 IGMLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 153
            +G  PDVGA++ LSRLPG  G+Y+GLTGARL G ++L CGLATH VP ++
Sbjct:   57 LGSFPDVGASYYLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPLEK 106
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102516.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIS1_ECTSI9.400e-2490.20Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A2K1JC01_PHYPA4.520e-1572.00ECH_2 domain-containing protein n=2 Tax=Physcomitr... [more]
A0A0V1G7Y7_9BILA6.430e-1565.963-hydroxyisobutyryl-CoA hydrolase, mitochondrial (... [more]
A0A3A9JDH4_9PROT1.160e-1465.31Enoyl-CoA hydratase/isomerase family protein n=2 T... [more]
A0A6P6G047_ZIZJJ1.250e-1465.963-hydroxyisobutyryl-CoA hydrolase 1-like n=1 Tax=Z... [more]
UPI00202548091.630e-1465.963-hydroxyisobutyryl-CoA hydrolase 1-like n=1 Tax=Z... [more]
UPI0010A5647B1.780e-1462.003-hydroxyisobutyryl-CoA hydrolase 1-like n=2 Tax=P... [more]
R0HG14_9BRAS2.000e-1466.00ECH_2 domain-containing protein n=2 Tax=Capsella r... [more]
A0A7J7DU34_TRIWF2.010e-1471.74Beta-hydroxyisobutyryl-CoA hydrolase 1 n=1 Tax=Tri... [more]
UPI000B900D9C2.750e-1462.003-hydroxyisobutyryl-CoA hydrolase 1-like n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102516contigM-pyrifera_M_contig102516:301..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue5.7e-18
Seed eggNOG ortholog2880.D7FIS1
KEGG rclassRC00004,RC00014,RC00137
KEGG koko:K05605
KEGG ReactionR03158,R05064
KEGG Pathwayko00280,ko00410,ko00640,ko01100,ko01200,map00280,map00410,map00640,map01100,map01200
KEGG ModuleM00013
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016020,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.3-hydroxyisobutyryl-CoA hydrolase activity
EggNOG OGsCOG1024@1,KOG1684@2759
EC3.1.2.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size159
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.3408947-UTR-M-pyrifera_M_contig102516:300..3091622815528.3408947-UTR-M-pyrifera_M_contig102516:300..309Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102516 301..309 +
1692277450.3667333-UTR-M-pyrifera_M_contig102516:300..3091692277450.3667333-UTR-M-pyrifera_M_contig102516:300..309Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102516 301..309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.352506-CDS-M-pyrifera_M_contig102516:309..4591622815528.352506-CDS-M-pyrifera_M_contig102516:309..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102516 310..459 +
1692277450.3772185-CDS-M-pyrifera_M_contig102516:309..4591692277450.3772185-CDS-M-pyrifera_M_contig102516:309..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102516 310..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102516.539.1prot_M-pyrifera_M_contig102516.539.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102516 310..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102516.539.1

>prot_M-pyrifera_M_contig102516.539.1 ID=prot_M-pyrifera_M_contig102516.539.1|Name=mRNA_M-pyrifera_M_contig102516.539.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MLPDVGAAHVLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDRC*
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mRNA from alignment at M-pyrifera_M_contig102516:301..459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102516.539.1 ID=mRNA_M-pyrifera_M_contig102516.539.1|Name=mRNA_M-pyrifera_M_contig102516.539.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig102516:301..459+ (Macrocystis pyrifera P11B4 male)
GTCATTGGGATGCTTCCTGATGTGGGCGCCGCGCACGTGCTGTCGAGGCT
GCCCGGAGGGCTGGGACAGTACCTGGGACTGACGGGCGCGAGGCTTAGGG
GGGACGACCTCCTCTACTGTGGCCTGGCAACGCACCTCGTGCCCAGGGAC
AGGTGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102516:301..459+

>mRNA_M-pyrifera_M_contig102516.539.1 ID=mRNA_M-pyrifera_M_contig102516.539.1|Name=mRNA_M-pyrifera_M_contig102516.539.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig102516:301..459+ (Macrocystis pyrifera P11B4 male)
ATGCTTCCTGATGTGGGCGCCGCGCACGTGCTGTCGAGGCTGCCCGGAGG
GCTGGGACAGTACCTGGGACTGACGGGCGCGAGGCTTAGGGGGGACGACC
TCCTCTACTGTGGCCTGGCAACGCACCTCGTGCCCAGGGACAGGTGTTGA
ATGCTTCCTGATGTGGGCGCCGCGCACGTGCTGTCGAGGCTGCCCGGAGG
GCTGGGACAGTACCTGGGACTGACGGGCGCGAGGCTTAGGGGGGACGACC
TCCTCTACTGTGGCCTGGCAACGCACCTCGTGCCCAGGGACAGGTGTTGA
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