mRNA_M-pyrifera_M_contig126748.5385.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126748.5385.1
Unique NamemRNA_M-pyrifera_M_contig126748.5385.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: E1Z771_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z771_CHLVA)

HSP 1 Score: 73.6 bits (179), Expect = 6.240e-13
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 CPPCGTVVER-KCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDPCSL 180
            CPPCG +V    C+ G E  ++ CS   LF+C + CG+LL CG HHC   CHAGTC PC L
Sbjct:  239 CPPCGELVSTVSCLCGAEVAQLPCSQQELFKCPRVCGKLLDCGRHHCEEVCHAGTCGPCKL 299          
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: UPI0002659536 (transcriptional repressor NF-X1 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002659536)

HSP 1 Score: 72.8 bits (177), Expect = 1.140e-12
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    1 CPPCGTVVERKCVGGHE-RKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTC-DPCSLPCSLPRICSHXXXISHXXXPXXXPCPVLSPPTTCFCTTTPLSIPC 315
            CPPC ++ E++C GGHE R+ + C    +  CG+ CG  L C  H C   CH+G C + C  PC + R C H         P   PC  + PP+TCF     L+ PC
Sbjct:  439 CPPCTSLTEKRCHGGHEMRRNIPCHLENV-SCGRACGLPLPCKRHTCDKICHSGECPEKCEQPCQVARDCGH---------PCKLPCHDICPPSTCFANVN-LTCPC 534          
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A1V9X1I2_9ACAR (Transcriptional repressor NF-X1-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X1I2_9ACAR)

HSP 1 Score: 72.8 bits (177), Expect = 1.140e-12
Identity = 41/97 (42.27%), Postives = 50/97 (51.55%), Query Frame = 1
Query:    1 CPPCGTVVERKCVGGHE-RKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDP-CSLPCSLPRICSHXXXISHXXXPXXXPCPVLSPPTTCF 285
            CPPC +++E+KC GGHE R+ + C    +  CG+ CGR L CG H C   CHAG C   C  PC   R C H         P   PC    P +TCF
Sbjct:  444 CPPCTSLIEKKCHGGHEIRRNIPCHLDNV-SCGRPCGRPLTCGRHTCDKTCHAGECPTVCEQPCRKLRKCGH---------PCKLPCHDECPISTCF 530          
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: UPI001939EADB (NF-X1-type zinc finger protein NFXL1-like isoform X1 n=2 Tax=Styela clava TaxID=7725 RepID=UPI001939EADB)

HSP 1 Score: 70.9 bits (172), Expect = 5.500e-12
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 1
Query:    1 CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCH----------AG-TCDPCSLPCSLPR 198
            CPPC + V + C+G HER  + C     + CG+KCGRLL+CG H CSL CH          AG  C  C  PC+ PR
Sbjct:  592 CPPCKSPVPKVCLGDHERSNLPCFEARRYCCGRKCGRLLKCGNHTCSLLCHTVEGSLDQKMAGKNCAACEEPCTKPR 668          
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A821V5M3_9NEOP (Hypothetical protein n=5 Tax=Pieris TaxID=7115 RepID=A0A821V5M3_9NEOP)

HSP 1 Score: 69.7 bits (169), Expect = 1.420e-11
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDPC 174
            CPPC   + +KC  G E + + CS+ +  +CG++CGR L CG+H C+  CH G C+PC
Sbjct:  499 CPPCQATIAKKCGCGAESRSVLCSSKLPQECGRQCGRKLNCGVHSCANDCHEGPCEPC 556          
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A1S3I8Q2_LINUN (transcriptional repressor NF-X1 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I8Q2_LINUN)

HSP 1 Score: 67.4 bits (163), Expect = 9.170e-11
Identity = 40/102 (39.22%), Postives = 52/102 (50.98%), Query Frame = 1
Query:    1 CPPCGTVVERKCVGGHE-RKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTC----DPCSLPCSLPR-ICSHXXXISHXXXPXXXPCPVLSP--PTTC 282
            CPPC T+ E+ C+GGHE RK + C    +  CG +C + L CG H C L CH G C    + C  PC   R +C H         P   PC  ++P  P+TC
Sbjct:  719 CPPCATLTEKLCMGGHELRKNIPCHLTDI-SCGLRCNKELPCGRHKCQLLCHKGACLKEGESCIQPCPESRPVCGH---------PCKAPCHQMAPCPPSTC 810          
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A293MCF4_ORNER (Protein shuttle craft (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MCF4_ORNER)

HSP 1 Score: 66.2 bits (160), Expect = 2.330e-10
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    1 CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDPC 174
            CPPC   V R C  G   K + CS      CG++C ++L C +H C +PCHAG+C+PC
Sbjct:  473 CPPCVATVRRSCYCGSITKCVRCSQDQDLSCGERCAKVLNCEIHTCDVPCHAGSCNPC 530          
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A7M7K6Z6_VARDE (Uncharacterized protein n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7K6Z6_VARDE)

HSP 1 Score: 65.5 bits (158), Expect = 4.310e-10
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    1 CPPCGTVVERKCVGGHE-RKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDP-CSLPCSL 192
            CPPC ++ E+KC GGHE R+ + C    +  CG+ CGR L CG H C   CHAG C   C  PC +
Sbjct:  738 CPPCTSLTEKKCHGGHELRRNIPCHLDNV-SCGRPCGRPLSCGRHSCDKTCHAGECPTSCEQPCKV 802          
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: W6KC25_9TRYP (RING-type domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KC25_9TRYP)

HSP 1 Score: 65.1 bits (157), Expect = 5.600e-10
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1
Query:    1 CPPCGTVVERKCVGGHERKEMACSAPML-FQCGKKCGRLLQCGMHHCSLPCHAGTCDPCSL 180
            CPPCG   E+ C  G E K + CS+ +  F+C + CG+LL CG HHC + CH G C  C +
Sbjct:  144 CPPCGCTREQACYCGKEIKMVGCSSMIDGFECNQPCGKLLDCGRHHCEVLCHTGPCPICKV 204          
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Match: A0A2R5LJK7_9ACAR (Putative transcription factor nf-x1 (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LJK7_9ACAR)

HSP 1 Score: 64.7 bits (156), Expect = 8.070e-10
Identity = 27/58 (46.55%), Postives = 32/58 (55.17%), Query Frame = 1
Query:    1 CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPCHAGTCDPC 174
            CPPC   V R C  G   + + CS      CG  CG+LL C +H C +PCHAG C PC
Sbjct:  443 CPPCSATVRRPCHCGRITRCVRCSQQQDLSCGDPCGQLLNCEIHTCDVPCHAGGCKPC 500          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126748.5385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E1Z771_CHLVA6.240e-1352.46Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
UPI00026595361.140e-1238.32transcriptional repressor NF-X1 n=1 Tax=Galendromu... [more]
A0A1V9X1I2_9ACAR1.140e-1242.27Transcriptional repressor NF-X1-like n=1 Tax=Tropi... [more]
UPI001939EADB5.500e-1245.45NF-X1-type zinc finger protein NFXL1-like isoform ... [more]
A0A821V5M3_9NEOP1.420e-1144.83Hypothetical protein n=5 Tax=Pieris TaxID=7115 Rep... [more]
A0A1S3I8Q2_LINUN9.170e-1139.22transcriptional repressor NF-X1 isoform X1 n=2 Tax... [more]
A0A293MCF4_ORNER2.330e-1044.83Protein shuttle craft (Fragment) n=1 Tax=Ornithodo... [more]
A0A7M7K6Z6_VARDE4.310e-1046.97Uncharacterized protein n=2 Tax=Varroa TaxID=62624... [more]
W6KC25_9TRYP5.600e-1045.90RING-type domain-containing protein n=1 Tax=Phytom... [more]
A0A2R5LJK7_9ACAR8.070e-1046.55Putative transcription factor nf-x1 (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126748contigM-pyrifera_M_contig126748:33..365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score74.7
Seed ortholog evalue3e-11
Seed eggNOG ortholog7165.AGAP005362-PA
KEGG koko:K15683
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Nuclear transcription factor, x-box binding 1
EggNOG OGs38HTN@33154,3BCYR@33208,3CRGR@33213,3SIFP@50557,41TDH@6656,450XN@7147,45FYB@7148,KOG1952@1,KOG1952@2759
COG Functional cat.K
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.5125842-CDS-M-pyrifera_M_contig126748:32..3651622815781.5125842-CDS-M-pyrifera_M_contig126748:32..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126748 33..365 +
1692277566.5369272-CDS-M-pyrifera_M_contig126748:32..3651692277566.5369272-CDS-M-pyrifera_M_contig126748:32..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126748 33..365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126748.5385.1prot_M-pyrifera_M_contig126748.5385.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126748 33..365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126748.5385.1

>prot_M-pyrifera_M_contig126748.5385.1 ID=prot_M-pyrifera_M_contig126748.5385.1|Name=mRNA_M-pyrifera_M_contig126748.5385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
CPPCGTVVERKCVGGHERKEMACSAPMLFQCGKKCGRLLQCGMHHCSLPC
HAGTCDPCSLPCSLPRICSHPCPISHCHPPPCPPCPVLSPPTTCFCTTTP
LSIPCSSFSAA
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mRNA from alignment at M-pyrifera_M_contig126748:33..365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126748.5385.1 ID=mRNA_M-pyrifera_M_contig126748.5385.1|Name=mRNA_M-pyrifera_M_contig126748.5385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig126748:33..365+ (Macrocystis pyrifera P11B4 male)
TGTCCGCCTTGTGGCACTGTGGTGGAGAGGAAGTGTGTGGGTGGTCATGA GAGGAAGGAAATGGCTTGTAGTGCTCCAATGCTGTTCCAATGTGGGAAGA AGTGTGGAAGATTGCTGCAATGTGGAATGCATCACTGCTCCTTGCCATGT CACGCTGGGACATGCGACCCTTGCTCTCTGCCATGCTCTCTGCCTCGTAT CTGTTCCCACCCCTGTCCCATCTCCCACTGTCACCCTCCTCCTTGCCCTC CTTGTCCCGTCCTCTCCCCTCCCACCACCTGCTTCTGCACCACAACCCCC CTCTCCATCCCTTGCTCCTCCTTCTCCGCCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126748:33..365+

>mRNA_M-pyrifera_M_contig126748.5385.1 ID=mRNA_M-pyrifera_M_contig126748.5385.1|Name=mRNA_M-pyrifera_M_contig126748.5385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig126748:33..365+ (Macrocystis pyrifera P11B4 male)
TGTCCGCCTTGTGGCACTGTGGTGGAGAGGAAGTGTGTGGGTGGTCATGA
GAGGAAGGAAATGGCTTGTAGTGCTCCAATGCTGTTCCAATGTGGGAAGA
AGTGTGGAAGATTGCTGCAATGTGGAATGCATCACTGCTCCTTGCCATGT
CACGCTGGGACATGCGACCCTTGCTCTCTGCCATGCTCTCTGCCTCGTAT
CTGTTCCCACCCCTGTCCCATCTCCCACTGTCACCCTCCTCCTTGCCCTC
CTTGTCCCGTCCTCTCCCCTCCCACCACCTGCTTCTGCACCACAACCCCC
CTCTCCATCCCTTGCTCCTCCTTCTCCGCCGCCTGTCCGCCTTGTGGCAC
TGTGGTGGAGAGGAAGTGTGTGGGTGGTCATGAGAGGAAGGAAATGGCTT
GTAGTGCTCCAATGCTGTTCCAATGTGGGAAGAAGTGTGGAAGATTGCTG
CAATGTGGAATGCATCACTGCTCCTTGCCATGTCACGCTGGGACATGCGA
CCCTTGCTCTCTGCCATGCTCTCTGCCTCGTATCTGTTCCCACCCCTGTC
CCATCTCCCACTGTCACCCTCCTCCTTGCCCTCCTTGTCCCGTCCTCTCC
CCTCCCACCACCTGCTTCTGCACCACAACCCCCCTCTCCATCCCTTGCTC
CTCCTTCTCCGCCGCC
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