mRNA_M-pyrifera_M_contig126715.5380.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126715.5380.1
Unique NamemRNA_M-pyrifera_M_contig126715.5380.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126715.5380.1 vs. uniprot
Match: A0A386C7Q9_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A386C7Q9_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.530e-5
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:   37 GVGTIGLVSGAVFALKSNRADEDSRAFCVDSVC-QPEGVRLNEEAKSSALLADVQFAAGLAFVGIGGYLLLT 249
            GVG +GL +GAVF +++   + D+   C  + C  P  +  N +A++SA +A+V  A GLA VG+  YL  T
Sbjct:  193 GVGLLGLATGAVFGVRAVVRNRDANRVCPGTDCADPAALDANRDARTSASIANVGIAVGLAGVGVAAYLFAT 264
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126715.5380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A386C7Q9_9BACT1.530e-538.89Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126715contigM-pyrifera_M_contig126715:19..333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.31844-CDS-M-pyrifera_M_contig126715:18..3331622815781.31844-CDS-M-pyrifera_M_contig126715:18..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126715 19..333 -
1692277566.456473-CDS-M-pyrifera_M_contig126715:18..3331692277566.456473-CDS-M-pyrifera_M_contig126715:18..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126715 19..333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126715.5380.1prot_M-pyrifera_M_contig126715.5380.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126715 19..333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126715.5380.1

>prot_M-pyrifera_M_contig126715.5380.1 ID=prot_M-pyrifera_M_contig126715.5380.1|Name=mRNA_M-pyrifera_M_contig126715.5380.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
GNGRRNWGLGFMGVGTIGLVSGAVFALKSNRADEDSRAFCVDSVCQPEGV
RLNEEAKSSALLADVQFAAGLAFVGIGGYLLLTESGSSKRSNKTAAVPSR
PRFLG
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mRNA from alignment at M-pyrifera_M_contig126715:19..333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126715.5380.1 ID=mRNA_M-pyrifera_M_contig126715.5380.1|Name=mRNA_M-pyrifera_M_contig126715.5380.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig126715:19..333- (Macrocystis pyrifera P11B4 male)
GGAAATGGGAGACGCAATTGGGGGCTTGGCTTCATGGGTGTCGGCACCAT
TGGCCTCGTGTCTGGGGCTGTCTTTGCCCTGAAATCCAATCGCGCTGACG
AAGACAGCCGTGCCTTTTGCGTCGATTCGGTCTGCCAGCCGGAGGGCGTC
CGGCTGAACGAGGAAGCAAAGAGCTCGGCCCTGCTAGCCGATGTGCAATT
TGCCGCCGGCTTGGCGTTTGTGGGCATCGGTGGCTATCTTCTGCTCACGG
AATCTGGCTCAAGCAAACGCTCGAACAAGACCGCTGCTGTCCCATCGCGC
CCTCGCTTCCTCGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126715:19..333-

>mRNA_M-pyrifera_M_contig126715.5380.1 ID=mRNA_M-pyrifera_M_contig126715.5380.1|Name=mRNA_M-pyrifera_M_contig126715.5380.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig126715:19..333- (Macrocystis pyrifera P11B4 male)
GGAAATGGGAGACGCAATTGGGGGCTTGGCTTCATGGGTGTCGGCACCAT
TGGCCTCGTGTCTGGGGCTGTCTTTGCCCTGAAATCCAATCGCGCTGACG
AAGACAGCCGTGCCTTTTGCGTCGATTCGGTCTGCCAGCCGGAGGGCGTC
CGGCTGAACGAGGAAGCAAAGAGCTCGGCCCTGCTAGCCGATGTGCAATT
TGCCGCCGGCTTGGCGTTTGTGGGCATCGGTGGCTATCTTCTGCTCACGG
AATCTGGCTCAAGCAAACGCTCGAACAAGACCGCTGCTGTCCCATCGCGC
CCTCGCTTCCTCGGAGGAAATGGGAGACGCAATTGGGGGCTTGGCTTCAT
GGGTGTCGGCACCATTGGCCTCGTGTCTGGGGCTGTCTTTGCCCTGAAAT
CCAATCGCGCTGACGAAGACAGCCGTGCCTTTTGCGTCGATTCGGTCTGC
CAGCCGGAGGGCGTCCGGCTGAACGAGGAAGCAAAGAGCTCGGCCCTGCT
AGCCGATGTGCAATTTGCCGCCGGCTTGGCGTTTGTGGGCATCGGTGGCT
ATCTTCTGCTCACGGAATCTGGCTCAAGCAAACGCTCGAACAAGACCGCT
GCTGTCCCATCGCGCCCTCGCTTCCTCGGA
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