mRNA_M-pyrifera_M_contig126710.5379.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126710.5379.1
Unique NamemRNA_M-pyrifera_M_contig126710.5379.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126710.5379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126710contigM-pyrifera_M_contig126710:54..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_005200.1
Exons1
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.2819047-CDS-M-pyrifera_M_contig126710:53..4401622815781.2819047-CDS-M-pyrifera_M_contig126710:53..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126710 54..440 -
1692277566.4448965-CDS-M-pyrifera_M_contig126710:53..4401692277566.4448965-CDS-M-pyrifera_M_contig126710:53..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126710 54..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126710.5379.1prot_M-pyrifera_M_contig126710.5379.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126710 54..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126710.5379.1

>prot_M-pyrifera_M_contig126710.5379.1 ID=prot_M-pyrifera_M_contig126710.5379.1|Name=mRNA_M-pyrifera_M_contig126710.5379.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MLGMGYGALAQAYEATGKVSAAVSALREFLGDAVTEADGGDAGVLAAMQA
ALAALLSRHGEPQGAEKAMRAAFELQRSSVADTASGTPLVDRARAELGVA
LGAAKEQALFHAVSKDIAALLAWKTNRDP
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mRNA from alignment at M-pyrifera_M_contig126710:54..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126710.5379.1 ID=mRNA_M-pyrifera_M_contig126710.5379.1|Name=mRNA_M-pyrifera_M_contig126710.5379.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig126710:54..440- (Macrocystis pyrifera P11B4 male)
ATGCTGGGAATGGGGTATGGTGCCTTGGCGCAGGCCTACGAGGCCACTGG
CAAAGTGAGTGCAGCCGTCAGTGCGCTTCGCGAATTTTTGGGAGACGCCG
TGACTGAGGCGGATGGGGGCGATGCAGGGGTGTTGGCGGCGATGCAAGCT
GCTCTGGCAGCGCTCTTGTCGCGCCACGGCGAACCACAGGGCGCTGAAAA
GGCGATGCGAGCCGCATTTGAACTCCAACGATCCTCTGTCGCTGACACTG
CTTCCGGAACACCACTCGTCGATCGTGCCCGCGCTGAACTTGGAGTGGCT
CTAGGCGCAGCCAAAGAACAAGCGCTTTTCCACGCAGTCTCCAAAGACAT
TGCCGCCCTCCTCGCGTGGAAAACCAACAGAGACCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126710:54..440-

>mRNA_M-pyrifera_M_contig126710.5379.1 ID=mRNA_M-pyrifera_M_contig126710.5379.1|Name=mRNA_M-pyrifera_M_contig126710.5379.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig126710:54..440- (Macrocystis pyrifera P11B4 male)
ATGCTGGGAATGGGGTATGGTGCCTTGGCGCAGGCCTACGAGGCCACTGG
CAAAGTGAGTGCAGCCGTCAGTGCGCTTCGCGAATTTTTGGGAGACGCCG
TGACTGAGGCGGATGGGGGCGATGCAGGGGTGTTGGCGGCGATGCAAGCT
GCTCTGGCAGCGCTCTTGTCGCGCCACGGCGAACCACAGGGCGCTGAAAA
GGCGATGCGAGCCGCATTTGAACTCCAACGATCCTCTGTCGCTGACACTG
CTTCCGGAACACCACTCGTCGATCGTGCCCGCGCTGAACTTGGAGTGGCT
CTAGGCGCAGCCAAAGAACAAGCGCTTTTCCACGCAGTCTCCAAAGACAT
TGCCGCCCTCCTCGCGTGGAAAACCAACAGAGACCCCATGCTGGGAATGG
GGTATGGTGCCTTGGCGCAGGCCTACGAGGCCACTGGCAAAGTGAGTGCA
GCCGTCAGTGCGCTTCGCGAATTTTTGGGAGACGCCGTGACTGAGGCGGA
TGGGGGCGATGCAGGGGTGTTGGCGGCGATGCAAGCTGCTCTGGCAGCGC
TCTTGTCGCGCCACGGCGAACCACAGGGCGCTGAAAAGGCGATGCGAGCC
GCATTTGAACTCCAACGATCCTCTGTCGCTGACACTGCTTCCGGAACACC
ACTCGTCGATCGTGCCCGCGCTGAACTTGGAGTGGCTCTAGGCGCAGCCA
AAGAACAAGCGCTTTTCCACGCAGTCTCCAAAGACATTGCCGCCCTCCTC
GCGTGGAAAACCAACAGAGACCCC
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