mRNA_M-pyrifera_M_contig126652.5366.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126652.5366.1
Unique NamemRNA_M-pyrifera_M_contig126652.5366.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126652.5366.1 vs. uniprot
Match: K1RFQ3_CRAGI (Mps one binder kinase activator-like 3 n=14 Tax=Protostomia TaxID=33317 RepID=K1RFQ3_CRAGI)

HSP 1 Score: 61.6 bits (148), Expect = 2.360e-9
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 LSVQEYLEYTI-KHVDDVGRVVTPPRGMDELRFLYEHIRLTLVDANALIAELLGVCTPEKCRMMVTSGGSEFKCAAHSPPRQVRA 252
            L+VQ++++  I K   ++  ++TPP G++E  + YEH+R   ++ N L  +L   C PE+C  M  +    F CAAH  P++  A
Sbjct:   40 LAVQQFIQQAIRKDFTNIEEILTPPEGVEEGVWKYEHLRQFCMELNGLCVKLQTECHPEQCSQMTATEQWIFLCAAHKTPKECPA 124
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BLAST of mRNA_M-pyrifera_M_contig126652.5366.1 vs. uniprot
Match: A0A0N5AGN2_9BILA (Uncharacterized protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AGN2_9BILA)

HSP 1 Score: 60.5 bits (145), Expect = 5.830e-9
Identity = 30/85 (35.29%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 LSVQEYLEYTIKH-VDDVGRVVTPPRGMDELRFLYEHIRLTLVDANALIAELLGVCTPEKCRMMVTSGGSEFKCAAHSPPRQVRA 252
            L+VQ+Y++  I   V ++ R++TPP G++E  + YEH+R  +++ N L   L   C P+ C  M  +    F CAAH  P++  A
Sbjct:   38 LNVQQYIQQCINSDVKNIDRILTPPPGVEEGVWKYEHVRQFVMELNFLAIMLQEECKPDVCVQMTATEQWIFLCAAHKNPKECSA 122
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BLAST of mRNA_M-pyrifera_M_contig126652.5366.1 vs. uniprot
Match: A0A1I7SU50_BURXY ((pine wood nematode) hypothetical protein n=2 Tax=Bursaphelenchus TaxID=6324 RepID=A0A1I7SU50_BURXY)

HSP 1 Score: 60.5 bits (145), Expect = 6.040e-9
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    1 LSVQEYLEYTIK-HVDDVGRVVTPPRGMDELRFLYEHIRLTLVDANALIAELLGVCTPEKCRMMVTSGGSEFKCAAHSPPRQVRA 252
            L+V +Y++  I+ +  D+  ++TPP+G+DE  + YEH+R   ++ N L   L   CT E C  M  +    F CA+H  P++  A
Sbjct:   39 LAVHQYIQQAIRENYKDIENILTPPKGVDEGVWKYEHLRQFCMELNGLAVLLQEECTQETCASMNATQSWIFLCASHKNPKECAA 123
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BLAST of mRNA_M-pyrifera_M_contig126652.5366.1 vs. uniprot
Match: A0A8B8C2E4_CRAVI (MOB-like protein phocein isoform X1 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8C2E4_CRAVI)

HSP 1 Score: 60.5 bits (145), Expect = 6.370e-9
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 LSVQEYLEYTI-KHVDDVGRVVTPPRGMDELRFLYEHIRLTLVDANALIAELLGVCTPEKCRMMVTSGGSEFKCAAHSPPRQVRA 252
            L+VQ++++  I K   ++  ++TPP G++E  + YEH+R   ++ N L  +L   C P++C  M  +    F CAAH  P++  A
Sbjct:   40 LAVQQFIQQAIRKDFTNIEEILTPPEGVEEGVWKYEHLRQFCMELNGLCVKLQTECHPDQCSQMTATEQWIFLCAAHKTPKECPA 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126652.5366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
K1RFQ3_CRAGI2.360e-934.12Mps one binder kinase activator-like 3 n=14 Tax=Pr... [more]
A0A0N5AGN2_9BILA5.830e-935.29Uncharacterized protein n=1 Tax=Syphacia muris Tax... [more]
A0A1I7SU50_BURXY6.040e-934.12(pine wood nematode) hypothetical protein n=2 Tax=... [more]
A0A8B8C2E4_CRAVI6.370e-932.94MOB-like protein phocein isoform X1 n=1 Tax=Crasso... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126652contigM-pyrifera_M_contig126652:87..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score64.7
Seed ortholog evalue2.7e-08
Seed eggNOG ortholog13249.RPRC013704-PA
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000902,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0007399,GO:0008088,GO:0008150,GO:0008582,GO:0009653,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010970,GO:0016043,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022402,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030154,GO:0030182,GO:0030424,GO:0030705,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033267,GO:0035330,GO:0035331,GO:0040008,GO:0042995,GO:0043005,GO:0043195,GO:0043679,GO:0044085,GO:0044087,GO:0044306,GO:0044424,GO:0044444,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045886,GO:0045926,GO:0046907,GO:0048285,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048640,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051225,GO:0051234,GO:0051239,GO:0051241,GO:0051641,GO:0051649,GO:0051960,GO:0051961,GO:0051963,GO:0051964,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0090307,GO:0090443,GO:0097458,GO:0098793,GO:0099111,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0140014,GO:0150034,GO:1902531,GO:1902532,GO:1902850,GO:1903047,GO:1904396,GO:1904397,GO:1905809,GO:2000026
EggNOG free text desc.Mob1/phocein family
EggNOG OGs38DCU@33154,3BCV3@33208,3CUI9@33213,3E8FS@33342,3SIEJ@50557,41UPH@6656,KOG1852@1,KOG1852@2759
COG Functional cat.D
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.7680478-CDS-M-pyrifera_M_contig126652:86..2611622815780.7680478-CDS-M-pyrifera_M_contig126652:86..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126652 87..261 -
1692277566.2280312-CDS-M-pyrifera_M_contig126652:86..2611692277566.2280312-CDS-M-pyrifera_M_contig126652:86..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126652 87..261 -
1622815780.778889-CDS-M-pyrifera_M_contig126652:342..4551622815780.778889-CDS-M-pyrifera_M_contig126652:342..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126652 343..455 -
1692277566.2432857-CDS-M-pyrifera_M_contig126652:342..4551692277566.2432857-CDS-M-pyrifera_M_contig126652:342..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126652 343..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126652.5366.1prot_M-pyrifera_M_contig126652.5366.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126652 87..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126652.5366.1

>prot_M-pyrifera_M_contig126652.5366.1 ID=prot_M-pyrifera_M_contig126652.5366.1|Name=mRNA_M-pyrifera_M_contig126652.5366.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
LSVQEYLEYTIKHVDDVGRVVTPPRGMDELRFLYEHIRLTLVDANALIAE
LLGVCTPEKCRMMVTSGGSEFKCAAHSPPRQVRAAVPTGVLCVTY*
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mRNA from alignment at M-pyrifera_M_contig126652:87..455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126652.5366.1 ID=mRNA_M-pyrifera_M_contig126652.5366.1|Name=mRNA_M-pyrifera_M_contig126652.5366.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig126652:87..455- (Macrocystis pyrifera P11B4 male)
CTGAGCGTGCAGGAGTACCTGGAGTACACGATCAAGCACGTGGATGATGT
TGGGAGAGTTGTGACACCACCGCGGGGGATGGACGAGCTCCGCTTCTTGT
ACGAGCACATTCGGTGCGGATCCAATGCGCCTGATTCTACGTGATCGCTC
TGATGACAATGTGCTAACGCGTGCGTGGTTATATCCGGCTGCAGGCTGAC
TCTGGTGGACGCCAACGCGTTGATTGCGGAGCTGCTGGGCGTGTGCACGC
CGGAGAAGTGCCGCATGATGGTGACGAGCGGTGGCTCCGAGTTCAAGTGC
GCGGCACACTCTCCTCCTCGTCAGGTCCGTGCCGCAGTGCCCACAGGTGT
CCTCTGCGTGACGTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126652:87..455-

>mRNA_M-pyrifera_M_contig126652.5366.1 ID=mRNA_M-pyrifera_M_contig126652.5366.1|Name=mRNA_M-pyrifera_M_contig126652.5366.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig126652:87..455- (Macrocystis pyrifera P11B4 male)
CTGAGCGTGCAGGAGTACCTGGAGTACACGATCAAGCACGTGGATGATGT
TGGGAGAGTTGTGACACCACCGCGGGGGATGGACGAGCTCCGCTTCTTGT
ACGAGCACATTCGCTGAGCGTGCAGGAGTACCTGGAGTACACGATCAAGC
ACGTGGATGATGTTGGGAGAGTTGTGACACCACCGCGGGGGATGGACGAG
CTCCGCTTCTTGTACGAGCACATTCGGCTGACTCTGGTGGACGCCAACGC
GTTGATTGCGGAGCTGCTGGGCGTGTGCACGCCGGAGAAGTGCCGCATGA
TGGTGACGAGCGGTGGCTCCGAGTTCAAGTGCGCGGCACACTCTCCTCCT
CGTCAGGTCCGTGCCGCAGTGCCCACAGGTGTCCTCTGCGTGACGTACTG
AGCTGACTCTGGTGGACGCCAACGCGTTGATTGCGGAGCTGCTGGGCGTG
TGCACGCCGGAGAAGTGCCGCATGATGGTGACGAGCGGTGGCTCCGAGTT
CAAGTGCGCGGCACACTCTCCTCCTCGTCAGGTCCGTGCCGCAGTGCCCA
CAGGTGTCCTCTGCGTGACGTACTGA
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