mRNA_M-pyrifera_M_contig1266.5354.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1266.5354.1
Unique NamemRNA_M-pyrifera_M_contig1266.5354.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1266.5354.1 vs. uniprot
Match: D8LTW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW7_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.670e-21
Identity = 74/172 (43.02%), Postives = 92/172 (53.49%), Query Frame = 1 
Query:   28 VSPDEKFEEIVGVSDTFVPAANVWVGEYPYLEKVVMERLLASRDSRRRRRGGTEDAGYEEDEQEDLRPMAYRDARAQARDWEDSKQASRPASG----------SSPRSNVSEYDXXXXXXXXXG---------------DPQYEGWGSSGFSSAQSR--VNVGSDGESGRGQ 462
            VSPDE+FEEI+GVSDTF+PAANVWVGEYPYL+KVVM RLLASRD +R           + DE E+L P+ YRD+  Q R  ED      P+ G          S+P ++  E +                         +P YEG GSSGFS A+ R  V  G    +GRG+
Sbjct:  158 VSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKR---XXXXXXXXDADEDEELDPITYRDSWTQTRPLEDD-----PSRGXXXXXXETGFSAPPAHAGEGEAGLPNGGAGTVLPDFGAYFGESEDEEPYYEGVGSSGFSGAERRRAVAAGERSAAGRGR 321
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BLAST of mRNA_M-pyrifera_M_contig1266.5354.1 vs. uniprot
Match: A0A6H5KJB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.460e-16
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   28 VSPDEKFEEIVGVSDTFVPAANVWVGEYPYLEKVVMERLLASRDSRR 168
            VSPDE+FEEI+GVSDTF+PAANVWVGEYPYL+KVVM RLLASRD +R
Sbjct:  154 VSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKR 200
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BLAST of mRNA_M-pyrifera_M_contig1266.5354.1 vs. uniprot
Match: K8Z4E0_NANGC (Putative membrane protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4E0_NANGC)

HSP 1 Score: 57.8 bits (138), Expect = 2.140e-6
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   31 SPDEKFEEIVGVSDTFVPAANVWVGEYPYLEKVVMERLLASRDSRRRRRGG 183
            SPD  F+E++GVSD FVP    WVGEYPY++KV  +  LASR    RRRGG
Sbjct:  197 SPD--FDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASRA---RRRGG 242
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BLAST of mRNA_M-pyrifera_M_contig1266.5354.1 vs. uniprot
Match: K8Z4B4_NANGC (Putative membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z4B4_NANGC)

HSP 1 Score: 57.8 bits (138), Expect = 2.300e-6
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   31 SPDEKFEEIVGVSDTFVPAANVWVGEYPYLEKVVMERLLASRDSRRRRRGG 183
            SPD  F+E++GVSD FVP    WVGEYPY++KV  +  LASR    RRRGG
Sbjct:  250 SPD--FDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASRA---RRRGG 295
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1266.5354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTW7_ECTSI1.670e-2143.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJB0_9PHAE2.460e-1685.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K8Z4E0_NANGC2.140e-658.82Putative membrane protein n=1 Tax=Nannochloropsis ... [more]
K8Z4B4_NANGC2.300e-658.82Putative membrane protein n=3 Tax=Monodopsidaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1266contigM-pyrifera_M_contig1266:7849..8779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog2880.D8LTW7
Hectar predicted targeting categoryother localisation
EggNOG OGs2E2W9@1,2SA2H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size622
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815780.0563126-CDS-M-pyrifera_M_contig1266:7848..79741622815780.0563126-CDS-M-pyrifera_M_contig1266:7848..7974Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1266 7849..7974 +
1692277565.858068-CDS-M-pyrifera_M_contig1266:7848..79741692277565.858068-CDS-M-pyrifera_M_contig1266:7848..7974Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1266 7849..7974 +
1622815780.0681062-CDS-M-pyrifera_M_contig1266:8283..87781622815780.0681062-CDS-M-pyrifera_M_contig1266:8283..8778Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1266 8284..8778 +
1692277565.869779-CDS-M-pyrifera_M_contig1266:8283..87781692277565.869779-CDS-M-pyrifera_M_contig1266:8283..8778Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1266 8284..8778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1266.5354.1prot_M-pyrifera_M_contig1266.5354.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1266 7849..8778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1266.5354.1

>prot_M-pyrifera_M_contig1266.5354.1 ID=prot_M-pyrifera_M_contig1266.5354.1|Name=mRNA_M-pyrifera_M_contig1266.5354.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=207bp
RAVVCAVFQVSPDEKFEEIVGVSDTFVPAANVWVGEYPYLEKVVMERLLA
SRDSRRRRRGGTEDAGYEEDEQEDLRPMAYRDARAQARDWEDSKQASRPA
SGSSPRSNVSEYDYDYDERDEDGDPQYEGWGSSGFSSAQSRVNVGSDGES
GRGQQWERVSGIPKPRRRAAARRFEEDEDSYGDRRMREASRGRSDRREDG
SEWGGGR
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mRNA from alignment at M-pyrifera_M_contig1266:7849..8779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1266.5354.1 ID=mRNA_M-pyrifera_M_contig1266.5354.1|Name=mRNA_M-pyrifera_M_contig1266.5354.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=931bp|location=Sequence derived from alignment at M-pyrifera_M_contig1266:7849..8779+ (Macrocystis pyrifera P11B4 male)
CGTGCTGTCGTGTGTGCTGTTTTCCAGGTCAGTCCAGACGAAAAATTCGA
AGAGATTGTCGGCGTCTCCGACACCTTCGTCCCTGCCGCGAACGTGTGGG
TCGGCGAGTACCCTTATCTTGAGAAGGCAAGTGGGACATGCGCCGAAGAG
AGTTAGAGCACACATGAGCATGGTTGGGACGGGACGCTCCGCGGATAAGT
TGTGAAGGGTTGACACTGGACGAGCTTTGCTGTAGGTCGTCGGTCGATTG
CTTTCGCTGTCTCTTTGCGACCACCAAAGCGGATGGTGGCAGGCCTCGTT
GCTAGCTTGGGGTGTGCTTTCTTGGAATGGAGCCACACTTTCTCGCTCAC
TCGTCCTTACGTAGCATTAATGTCGTCGTGTCCTCTATAGGTAAATACTA
ATTATGTCGCACGTATTTCCGCGCGACACGTCCAGGTCGTGATGGAACGC
CTCTTAGCGAGCCGTGATTCGAGGAGGAGGCGTCGAGGGGGCACCGAAGA
CGCGGGTTACGAGGAGGACGAGCAGGAGGACCTTCGGCCGATGGCCTACC
GGGACGCGCGGGCCCAAGCTCGAGATTGGGAAGATTCTAAACAAGCATCA
AGGCCCGCATCAGGCTCCTCGCCGAGAAGCAACGTGTCGGAGTATGACTA
CGACTACGACGAGCGAGACGAGGATGGCGACCCCCAGTACGAAGGATGGG
GCTCATCAGGATTTTCGTCCGCGCAATCGAGGGTCAACGTCGGGTCGGAC
GGCGAATCGGGAAGGGGCCAGCAATGGGAACGAGTGTCCGGAATCCCCAA
GCCGCGGCGACGGGCGGCAGCGAGGAGGTTTGAAGAGGACGAAGACTCTT
ACGGCGACCGCCGCATGCGGGAAGCGAGTAGAGGCAGGAGCGATCGACGA
GAGGATGGTTCGGAGTGGGGCGGCGGGCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1266:7849..8779+

>mRNA_M-pyrifera_M_contig1266.5354.1 ID=mRNA_M-pyrifera_M_contig1266.5354.1|Name=mRNA_M-pyrifera_M_contig1266.5354.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1242bp|location=Sequence derived from alignment at M-pyrifera_M_contig1266:7849..8779+ (Macrocystis pyrifera P11B4 male)
CGTGCTGTCGTGTGTGCTGTTTTCCAGGTCAGTCCAGACGAAAAATTCGA
AGAGATTGTCGGCGTCTCCGACACCTTCGTCCCTGCCGCGAACGTGTGGG
TCGGCGAGTACCCTTATCTTGAGAAGCGTGCTGTCGTGTGTGCTGTTTTC
CAGGTCAGTCCAGACGAAAAATTCGAAGAGATTGTCGGCGTCTCCGACAC
CTTCGTCCCTGCCGCGAACGTGTGGGTCGGCGAGTACCCTTATCTTGAGA
AGGTCGTGATGGAACGCCTCTTAGCGAGCCGTGATTCGAGGAGGAGGCGT
CGAGGGGGCACCGAAGACGCGGGTTACGAGGAGGACGAGCAGGAGGACCT
TCGGCCGATGGCCTACCGGGACGCGCGGGCCCAAGCTCGAGATTGGGAAG
ATTCTAAACAAGCATCAAGGCCCGCATCAGGCTCCTCGCCGAGAAGCAAC
GTGTCGGAGTATGACTACGACTACGACGAGCGAGACGAGGATGGCGACCC
CCAGTACGAAGGATGGGGCTCATCAGGATTTTCGTCCGCGCAATCGAGGG
TCAACGTCGGGTCGGACGGCGAATCGGGAAGGGGCCAGCAATGGGAACGA
GTGTCCGGAATCCCCAAGCCGCGGCGACGGGCGGCAGCGAGGAGGTTTGA
AGAGGACGAAGACTCTTACGGCGACCGCCGCATGCGGGAAGCGAGTAGAG
GCAGGAGCGATCGACGAGAGGATGGTTCGGAGTGGGGCGGCGGGCGGGTC
GTGATGGAACGCCTCTTAGCGAGCCGTGATTCGAGGAGGAGGCGTCGAGG
GGGCACCGAAGACGCGGGTTACGAGGAGGACGAGCAGGAGGACCTTCGGC
CGATGGCCTACCGGGACGCGCGGGCCCAAGCTCGAGATTGGGAAGATTCT
AAACAAGCATCAAGGCCCGCATCAGGCTCCTCGCCGAGAAGCAACGTGTC
GGAGTATGACTACGACTACGACGAGCGAGACGAGGATGGCGACCCCCAGT
ACGAAGGATGGGGCTCATCAGGATTTTCGTCCGCGCAATCGAGGGTCAAC
GTCGGGTCGGACGGCGAATCGGGAAGGGGCCAGCAATGGGAACGAGTGTC
CGGAATCCCCAAGCCGCGGCGACGGGCGGCAGCGAGGAGGTTTGAAGAGG
ACGAAGACTCTTACGGCGACCGCCGCATGCGGGAAGCGAGTAGAGGCAGG
AGCGATCGACGAGAGGATGGTTCGGAGTGGGGCGGCGGGCGG
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