mRNA_M-pyrifera_M_contig126501.5347.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126501.5347.1
Unique NamemRNA_M-pyrifera_M_contig126501.5347.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: A0A5A8EK01_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8EK01_CAFRO)

HSP 1 Score: 107 bits (266), Expect = 3.540e-26
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   13 RREFPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLEMLLGPEVLGAVEPEIMHRRFSNAERRSIILGGW 291
            R++FPHVDFS+  +DED +   DRRE + EV  R   F++F+ +  ERNI VVSHGVFLE L+G  VLG V+P +   RF N E R+I++GGW
Sbjct:  123 RKDFPHVDFSFISTDEDTWHNDDRRETIREVAERGHAFLRFIRSRPERNIAVVSHGVFLETLVGGLVLGVVDPRVSAERFRNCEMRAIVVGGW 215          
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: A0A5A8DKA6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DKA6_CAFRO)

HSP 1 Score: 107 bits (266), Expect = 5.730e-25
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   13 RREFPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLEMLLGPEVLGAVEPEIMHRRFSNAERRSIILGGW 291
            R++FPHVDFS+  +DED +   DRRE + EV  R   F++F+ +  ERNI VVSHGVFLE L+G  VLG V+P +   RF N E R+I++GGW
Sbjct:  426 RKDFPHVDFSFISTDEDTWHNDDRRETIREVAERGHAFLRFIRSRPERNIAVVSHGVFLETLVGGLVLGVVDPRVSAERFRNCEMRAIVVGGW 518          
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: A0A6P5XTB7_DURZI (phosphoglycerate mutase-like protein 1 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5XTB7_DURZI)

HSP 1 Score: 74.7 bits (182), Expect = 6.090e-14
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 MLQERREFPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLE---MLLGPEVLGAVEPEIMHRRFSNAERRSIIL 282
            + Q R  FP VDFS  ES++D+ W SD RE    V AR  +F+K+L   +E+ I VVSHGVFL+   + L  +    V+ +  + RF N E RS+I+
Sbjct:  143 LSQCRSRFPAVDFSLIESEDDVLWESDERETNEAVAARGIKFIKWLLGRKEKEIAVVSHGVFLQQTMIALRNKCYPLVDGDFNYSRFGNCEIRSVII 239          
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: UPI001923CF9C (phosphoglycerate mutase-like protein 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001923CF9C)

HSP 1 Score: 73.2 bits (178), Expect = 8.890e-14
Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   13 RREFPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLEMLLGPEVLGAVEPEIMH-------RRFSNAERRSIIL 282
            R  FP VDFS  ES+EDI W +D RE    V AR  +FV +L   +ER I VVSHGVFL+     E L A++ + +H        RF N E RS+I+
Sbjct:  100 RSRFPQVDFSLIESEEDILWEADERETNEAVAARGIKFVNWLLGRKEREIAVVSHGVFLQ-----ETLIALKNKCLHLMDTDPFTRFGNCEIRSVIV 191          
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: A0A6P6AUF8_DURZI (phosphoglycerate mutase-like protein isoform X1 n=5 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AUF8_DURZI)

HSP 1 Score: 73.9 bits (180), Expect = 1.320e-13
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 MLQERREFPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLEM----LLGPEVLGAVEPEIMHRRFSNAERRSI 276
            + Q R  FP VDFS  E+++DI W++D RE   EV+ARA +F+K+L   +E+ I VVSHGVFL+     L        +     H RF N E RS+
Sbjct:  153 ISQYRSRFPEVDFSLIENEDDILWKADERETHEEVMARAMKFIKWLWERQEKEIAVVSHGVFLDQTMIELFKNNKCSPLNDYDPHSRFRNCEIRSV 248          
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: A0A5C7H7B2_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7H7B2_9ROSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.550e-13
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   22 FPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLEMLLGPEVLGAVEPEIMHRRFSNAERRSIIL 282
            FP +DF   +S++DI W++D RE + EV  R ++F+++L T +E+ I VVSHG+FL+ +L   V    +P +   RF N E RS+++
Sbjct:  141 FPAIDFKLAKSEDDILWKADTRETMKEVTDRGKKFIEWLWTRQEKEIAVVSHGIFLQEILHTLVN---DPSMNTTRFQNCEIRSVVI 224          
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: A0A1R3FYK0_COCAP (Histidine phosphatase superfamily, clade-1 n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3FYK0_COCAP)

HSP 1 Score: 72.8 bits (177), Expect = 3.620e-13
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 MLQERREFPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLEMLLGPEVLGA-------VEPEIMHRRFSNAERRSIIL 282
            + Q R  FP VDFS  E ++DI W +D RE   EVIAR   F+K+L   +E+ I +VSHGVFL+ L+  E++ +       +E +I   RF N E RS+I+
Sbjct:  141 ISQYRSRFPAVDFSLIEDEDDILWTADEREPRDEVIARGMDFMKWLWGRKEKEIALVSHGVFLQELM-IELINSKKCLPLNMEGDIPRSRFKNCEIRSMII 240          
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: A0A1Q3BVH4_CEPFO (His_Phos_1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BVH4_CEPFO)

HSP 1 Score: 72.4 bits (176), Expect = 3.850e-13
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   22 FPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLE---MLLGPEVLGAVEPEIMHRRFSNAERRSIIL 282
            FP +DFS  ESD+D  W++D RE   +V AR  +F+++L T +E+ I VVSHGVFL+   + LG +   +V+ E+  +RF N E RS+++
Sbjct:  176 FPAIDFSLIESDDDNQWKADTRETHEDVAARGMEFMEWLWTRQEKEIAVVSHGVFLQQTLITLGNDCDPSVKIEL-GKRFDNCEMRSLVI 264          
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: UPI000B8C9540 (phosphoglycerate mutase-like protein n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C9540)

HSP 1 Score: 71.2 bits (173), Expect = 1.290e-12
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   22 FPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLEMLLGPEVLGAVEPEIMHRRFSNAERRSIIL 282
            FP +DFS  ESD+DI W++D RE + EV AR  + +K+L T +E+ I +VSHG+FL+  L   +    E + + +RF N E RS+ +
Sbjct:  145 FPLIDFSQIESDDDILWKADSREGLLEVAARGMKLMKWLRTRKEKEIAIVSHGIFLQQTL---LAFKNEFDELCQRFGNCELRSVTI 228          
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Match: M5W4N4_PRUPE (Uncharacterized protein n=8 Tax=Prunus TaxID=3754 RepID=M5W4N4_PRUPE)

HSP 1 Score: 70.5 bits (171), Expect = 2.250e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   22 FPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLRERNIVVVSHGVFLEMLLGPEV--LGAVEPEIMHRRFSNAERRSIIL 282
            FP VDFS  ESDEDI W+++ REL  EV AR  +F+ +L+T +E+ I +V+HG FL   L   +     +E + M + F+N E RS+++
Sbjct:  155 FPAVDFSLIESDEDILWKANVRELKEEVAARGLKFLNWLSTRKEKEIAIVTHGGFLFHTLSALLNDCDPLEKKEMCKHFTNCELRSMVI 243          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126501.5347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EK01_CAFRO3.540e-2652.69Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
A0A5A8DKA6_CAFRO5.730e-2552.69Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A6P5XTB7_DURZI6.090e-1442.27phosphoglycerate mutase-like protein 1 n=1 Tax=Dur... [more]
UPI001923CF9C8.890e-1445.36phosphoglycerate mutase-like protein 1 n=1 Tax=Hib... [more]
A0A6P6AUF8_DURZI1.320e-1342.71phosphoglycerate mutase-like protein isoform X1 n=... [more]
A0A5C7H7B2_9ROSI1.550e-1340.23Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
A0A1R3FYK0_COCAP3.620e-1342.57Histidine phosphatase superfamily, clade-1 n=1 Tax... [more]
A0A1Q3BVH4_CEPFO3.850e-1343.33His_Phos_1 domain-containing protein n=1 Tax=Cepha... [more]
UPI000B8C95401.290e-1242.53phosphoglycerate mutase-like protein n=1 Tax=Caric... [more]
M5W4N4_PRUPE2.250e-1242.70Uncharacterized protein n=8 Tax=Prunus TaxID=3754 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126501contigM-pyrifera_M_contig126501:157..447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.9
Seed ortholog evalue3.8e-10
Seed eggNOG ortholog3067.XP_002947931.1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Phosphoglycerate mutase family
EggNOG OGs34KAF@3041,37ID6@33090,KOG4754@1,KOG4754@2759
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-1
Ec32 orthologEc-06_003070.1
COG Functional cat.G
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.686658-CDS-M-pyrifera_M_contig126501:156..4471622815779.686658-CDS-M-pyrifera_M_contig126501:156..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126501 157..447 -
1692277565.6793606-CDS-M-pyrifera_M_contig126501:156..4471692277565.6793606-CDS-M-pyrifera_M_contig126501:156..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126501 157..447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126501.5347.1prot_M-pyrifera_M_contig126501.5347.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126501 157..447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126501.5347.1

>prot_M-pyrifera_M_contig126501.5347.1 ID=prot_M-pyrifera_M_contig126501.5347.1|Name=mRNA_M-pyrifera_M_contig126501.5347.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MLQERREFPHVDFSYCESDEDIYWRSDRRELVSEVIARARQFVKFLATLR
ERNIVVVSHGVFLEMLLGPEVLGAVEPEIMHRRFSNAERRSIILGGW
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mRNA from alignment at M-pyrifera_M_contig126501:157..447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126501.5347.1 ID=mRNA_M-pyrifera_M_contig126501.5347.1|Name=mRNA_M-pyrifera_M_contig126501.5347.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig126501:157..447- (Macrocystis pyrifera P11B4 male)
ATGTTGCAGGAGCGCCGCGAGTTTCCGCACGTGGACTTTTCGTACTGCGA GTCTGACGAGGACATCTACTGGCGGAGCGACCGTCGGGAGCTGGTGTCTG AGGTGATAGCGCGGGCGAGGCAGTTTGTCAAGTTCCTTGCGACGCTGCGG GAGCGAAACATCGTGGTGGTGAGCCACGGGGTGTTTCTGGAGATGCTGCT GGGGCCCGAGGTGCTTGGTGCAGTGGAGCCTGAGATCATGCACCGTCGTT TTTCCAATGCAGAACGAAGATCGATCATTTTGGGAGGCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126501:157..447-

>mRNA_M-pyrifera_M_contig126501.5347.1 ID=mRNA_M-pyrifera_M_contig126501.5347.1|Name=mRNA_M-pyrifera_M_contig126501.5347.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig126501:157..447- (Macrocystis pyrifera P11B4 male)
ATGTTGCAGGAGCGCCGCGAGTTTCCGCACGTGGACTTTTCGTACTGCGA
GTCTGACGAGGACATCTACTGGCGGAGCGACCGTCGGGAGCTGGTGTCTG
AGGTGATAGCGCGGGCGAGGCAGTTTGTCAAGTTCCTTGCGACGCTGCGG
GAGCGAAACATCGTGGTGGTGAGCCACGGGGTGTTTCTGGAGATGCTGCT
GGGGCCCGAGGTGCTTGGTGCAGTGGAGCCTGAGATCATGCACCGTCGTT
TTTCCAATGCAGAACGAAGATCGATCATTTTGGGAGGCTGGATGTTGCAG
GAGCGCCGCGAGTTTCCGCACGTGGACTTTTCGTACTGCGAGTCTGACGA
GGACATCTACTGGCGGAGCGACCGTCGGGAGCTGGTGTCTGAGGTGATAG
CGCGGGCGAGGCAGTTTGTCAAGTTCCTTGCGACGCTGCGGGAGCGAAAC
ATCGTGGTGGTGAGCCACGGGGTGTTTCTGGAGATGCTGCTGGGGCCCGA
GGTGCTTGGTGCAGTGGAGCCTGAGATCATGCACCGTCGTTTTTCCAATG
CAGAACGAAGATCGATCATTTTGGGAGGCTGG
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