mRNA_M-pyrifera_M_contig126485.5341.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126485.5341.1
Unique NamemRNA_M-pyrifera_M_contig126485.5341.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A0A518AAT6_9PLAN (Cysteine desulfurase n=9 Tax=Gimesia TaxID=1649453 RepID=A0A518AAT6_9PLAN)

HSP 1 Score: 156 bits (395), Expect = 1.080e-44
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 1
Query:    1 EACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFLKELHHASSKSFVGN 258
            EACLAGLK+  VELISPQ TE+LAGIIAFRHPEAE+IY+HLHSK+IHPMYHAGRIRVALHGYNTMDDVETFL+EL+HA SKSFVGN
Sbjct:  295 EACLAGLKKVDVELISPQSTENLAGIIAFRHPEAEQIYQHLHSKQIHPMYHAGRIRVALHGYNTMDDVETFLRELNHALSKSFVGN 380          
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A6BZQ7_9PLAN (Aminotran_5 domain-containing protein n=9 Tax=Planctomycetaceae TaxID=126 RepID=A6BZQ7_9PLAN)

HSP 1 Score: 152 bits (384), Expect = 4.670e-43
Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 EACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFLKELHHASSKSFVGN 258
            EACLAGLKE SVELISP+ TE LAGIIAFRHP+AERIY+HLHSK+IHPMYHAGRIRVALHGYNTM++VETFL EL+HA +KSFVGN
Sbjct:  295 EACLAGLKETSVELISPRSTEHLAGIIAFRHPDAERIYQHLHSKQIHPMYHAGRIRVALHGYNTMENVETFLSELNHALAKSFVGN 380          
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A0A517RK42_9PLAN (Putative cysteine desulfurase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RK42_9PLAN)

HSP 1 Score: 146 bits (369), Expect = 8.340e-41
Identity = 70/86 (81.40%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 EACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFLKELHHASSKSFVGN 258
            EACL GLK+ SVELISP++ E+LAGIIAFRHPEAERIY+HLHSK+IHPMYHAGRIRVALHGYNTM++VETFL+EL+ A SKS+VGN
Sbjct:  295 EACLEGLKQTSVELISPKEAENLAGIIAFRHPEAERIYQHLHSKQIHPMYHAGRIRVALHGYNTMENVETFLRELNVALSKSYVGN 380          
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A0A517WQX8_9PLAN (Putative cysteine desulfurase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WQX8_9PLAN)

HSP 1 Score: 143 bits (361), Expect = 1.200e-39
Identity = 69/85 (81.18%), Postives = 77/85 (90.59%), Query Frame = 1
Query:    1 EACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFLKELHHASSKSFVG 255
            EACLAGL E  VE ISP++ E+LAGIIAFRHPEAERIY+HLHSK+IHPMYHAGRIRVALHGYNT+DDVETFL+EL +  SKSFVG
Sbjct:  295 EACLAGLAELPVEFISPRKIENLAGIIAFRHPEAERIYQHLHSKQIHPMYHAGRIRVALHGYNTLDDVETFLRELKYTLSKSFVG 379          
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A0A2M8PRP6_9CHLR (Aminotran_5 domain-containing protein n=1 Tax=Phototrophicales bacterium TaxID=2364211 RepID=A0A2M8PRP6_9CHLR)

HSP 1 Score: 96.7 bits (239), Expect = 4.420e-24
Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 EACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFLKELHHA 234
            +AC  G+++  VEL++P   +  AGIIAFRHP+AE+I++HL   +IH M HAGR+RVA+HGYNTM D+E FL+ LH A
Sbjct:   34 QACYDGIRDLPVELLTPNDLDSWAGIIAFRHPKAEQIHQHLLDNDIHIMAHAGRLRVAIHGYNTMADIEHFLEHLHDA 111          
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A0A7X7FRG6_9BACT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7FRG6_9BACT)

HSP 1 Score: 102 bits (254), Expect = 5.050e-24
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    4 ACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFLKELHHASS 240
            AC+AGLK   V++++P     LAGIIAFRHP+A  I++HLH + IH MYHAGR+RVA+HGYNT DDV+ FL  L  A+S
Sbjct:  296 ACMAGLKRLPVDMLTPDDPHALAGIIAFRHPKAGDIHRHLHERRIHVMYHAGRLRVAIHGYNTADDVDRFLAALKEATS 374          
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A0A7X7AXR5_9BACT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7X7AXR5_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 1.420e-22
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 ACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFLKELHHA 234
            ACL GL+   VE+I+P + + LAGI+AFRHPEAER+  HL +  +H M  AGR+RV+LHGYNT DDVE FL+ LH A
Sbjct:  296 ACLDGLRRLPVEVITPAEEDALAGILAFRHPEAERLQAHLRAANVHLMAQAGRLRVSLHGYNTSDDVEAFLRHLHQA 372          
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A0A2D5Z5F4_9BACT (Aminotransferase n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5Z5F4_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 1.880e-22
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 EACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFL 216
            +ACLAGLK+  VEL++P +   +AGI+A RH EAERI++ LH ++IH MYHAGR+R+A+HGYNTMDDV+  L
Sbjct:  295 QACLAGLKKLPVELLTPDEPNAIAGILAVRHDEAERIHRALHQQDIHIMYHAGRLRIAIHGYNTMDDVDRLL 366          
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A0A2E7MKT3_9BACT (Aminotransferase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E7MKT3_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 9.970e-22
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    7 CLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFLKELHHA 234
            CL GLK  +VEL++P + + LAGI+A RHP+AERI++ LH K+IH MYHAGR+R+++HGYNT  D+E  L+ L  A
Sbjct:  297 CLEGLKTLAVELLTPDEADALAGIVAIRHPQAERIHQILHEKDIHIMYHAGRLRISIHGYNTPADIEHLLQTLEEA 372          
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Match: A0A3M1QM05_9CHLR (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1QM05_9CHLR)

HSP 1 Score: 96.3 bits (238), Expect = 1.010e-21
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 EACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMYHAGRIRVALHGYNTMDDVETFLKELHHA 234
            +AC  G+++  +EL++P   +  AGIIAFRHP+AE+I++HL   +IH M HAGR+RVA+HGYNTM D+E FL+ LH A
Sbjct:  295 QACYDGIRDLPIELLTPNDPDSWAGIIAFRHPKAEQIHQHLLDNDIHIMAHAGRLRVAIHGYNTMADIEHFLEHLHDA 372          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126485.5341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518AAT6_9PLAN1.080e-4487.21Cysteine desulfurase n=9 Tax=Gimesia TaxID=1649453... [more]
A6BZQ7_9PLAN4.670e-4384.88Aminotran_5 domain-containing protein n=9 Tax=Plan... [more]
A0A517RK42_9PLAN8.340e-4181.40Putative cysteine desulfurase n=2 Tax=Gimesia TaxI... [more]
A0A517WQX8_9PLAN1.200e-3981.18Putative cysteine desulfurase n=2 Tax=Gimesia aqua... [more]
A0A2M8PRP6_9CHLR4.420e-2456.41Aminotran_5 domain-containing protein n=1 Tax=Phot... [more]
A0A7X7FRG6_9BACT5.050e-2459.49Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A7X7AXR5_9BACT1.420e-2259.74Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A2D5Z5F4_9BACT1.880e-2261.11Aminotransferase n=1 Tax=Phycisphaeraceae bacteriu... [more]
A0A2E7MKT3_9BACT9.970e-2256.58Aminotransferase n=1 Tax=Gemmatimonadetes bacteriu... [more]
A0A3M1QM05_9CHLR1.010e-2155.13Aminotransferase class V-fold PLP-dependent enzyme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126485contigM-pyrifera_M_contig126485:249..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score153.3
Seed ortholog evalue5.2e-35
Seed eggNOG ortholog344747.PM8797T_21763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aminotransferase class-V
EggNOG OGs2IZJW@203682,COG0520@1,COG0520@2
COG Functional cat.E
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.3531878-CDS-M-pyrifera_M_contig126485:248..5091622815779.3531878-CDS-M-pyrifera_M_contig126485:248..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126485 249..509 -
1692277565.4924004-CDS-M-pyrifera_M_contig126485:248..5091692277565.4924004-CDS-M-pyrifera_M_contig126485:248..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126485 249..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126485.5341.1prot_M-pyrifera_M_contig126485.5341.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126485 249..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126485.5341.1

>prot_M-pyrifera_M_contig126485.5341.1 ID=prot_M-pyrifera_M_contig126485.5341.1|Name=mRNA_M-pyrifera_M_contig126485.5341.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
EACLAGLKEASVELISPQQTEDLAGIIAFRHPEAERIYKHLHSKEIHPMY
HAGRIRVALHGYNTMDDVETFLKELHHASSKSFVGN*
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mRNA from alignment at M-pyrifera_M_contig126485:249..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126485.5341.1 ID=mRNA_M-pyrifera_M_contig126485.5341.1|Name=mRNA_M-pyrifera_M_contig126485.5341.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig126485:249..509- (Macrocystis pyrifera P11B4 male)
GAAGCCTGTCTTGCCGGCCTGAAAGAAGCAAGTGTCGAGTTGATTTCGCC CCAACAGACAGAAGATCTGGCGGGAATCATCGCTTTCCGGCACCCGGAAG CAGAGCGGATTTATAAGCACCTGCACAGTAAAGAGATTCATCCCATGTAC CACGCCGGTCGAATCCGCGTGGCCCTGCATGGATATAACACAATGGACGA TGTGGAGACGTTCCTCAAGGAATTACACCACGCGTCATCCAAGAGTTTTG TCGGGAATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126485:249..509-

>mRNA_M-pyrifera_M_contig126485.5341.1 ID=mRNA_M-pyrifera_M_contig126485.5341.1|Name=mRNA_M-pyrifera_M_contig126485.5341.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig126485:249..509- (Macrocystis pyrifera P11B4 male)
GAAGCCTGTCTTGCCGGCCTGAAAGAAGCAAGTGTCGAGTTGATTTCGCC
CCAACAGACAGAAGATCTGGCGGGAATCATCGCTTTCCGGCACCCGGAAG
CAGAGCGGATTTATAAGCACCTGCACAGTAAAGAGATTCATCCCATGTAC
CACGCCGGTCGAATCCGCGTGGCCCTGCATGGATATAACACAATGGACGA
TGTGGAGACGTTCCTCAAGGAATTACACCACGCGTCATCCAAGAGTTTTG
TCGGGAATTAGGAAGCCTGTCTTGCCGGCCTGAAAGAAGCAAGTGTCGAG
TTGATTTCGCCCCAACAGACAGAAGATCTGGCGGGAATCATCGCTTTCCG
GCACCCGGAAGCAGAGCGGATTTATAAGCACCTGCACAGTAAAGAGATTC
ATCCCATGTACCACGCCGGTCGAATCCGCGTGGCCCTGCATGGATATAAC
ACAATGGACGATGTGGAGACGTTCCTCAAGGAATTACACCACGCGTCATC
CAAGAGTTTTGTCGGGAATTAG
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