mRNA_M-pyrifera_M_contig126464.5333.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126464.5333.1
Unique NamemRNA_M-pyrifera_M_contig126464.5333.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0A2D6U5S8_9ACTN (Dihydrofolate reductase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U5S8_9ACTN)

HSP 1 Score: 188 bits (477), Expect = 3.070e-57
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLARQLHVI 336
            I+ WRPALE AGFEVVVP+IPGQHLEGDALV AL+GC+GVVAGDDKFTA V D LP L+VISKWGIGVDGIDR HAA +G  VTNTPGAFDEEVADVA  Y VML RQLH+I
Sbjct:   14 IEDWRPALEGAGFEVVVPEIPGQHLEGDALVAALDGCIGVVAGDDKFTAGVIDHLPSLKVISKWGIGVDGIDRAHAAAKGIPVTNTPGAFDEEVADVAYGYIVMLLRQLHII 125          
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0A800LR20_9ACTN (Dihydrofolate reductase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800LR20_9ACTN)

HSP 1 Score: 164 bits (414), Expect = 9.150e-48
Identity = 79/112 (70.54%), Postives = 92/112 (82.14%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLARQLHVI 336
            I+ + P+LEAAGFEV +P+I GQHLEG  LV AL+GCVGVVAGDD+FTAEV D+ P L+ ISKWGIGVDGID+  AA RG  VTNTPGAFD+EVADV MAY V+L RQLH +
Sbjct:   14 IEAYLPSLEAAGFEVALPEISGQHLEGAELVAALDGCVGVVAGDDQFTAEVLDQSPNLKAISKWGIGVDGIDKGAAAQRGIPVTNTPGAFDDEVADVTMAYCVLLLRQLHAV 125          
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0A800IDQ7_9ACTN (Dihydrofolate reductase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800IDQ7_9ACTN)

HSP 1 Score: 159 bits (401), Expect = 8.190e-46
Identity = 78/112 (69.64%), Postives = 89/112 (79.46%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLARQLHVI 336
            I+ + PAL AAGFEV +P+I GQHLEG  LVTAL GCVGVVAGDD+FTAEV D   +L+ ISKWGIGVDGID+  AA R   VTNTPGAFD+EVADV MAY V+L RQLH +
Sbjct:   14 IEAYLPALTAAGFEVQLPEIAGQHLEGTELVTALEGCVGVVAGDDQFTAEVLDHCLDLKAISKWGIGVDGIDKEAAALRNIPVTNTPGAFDDEVADVTMAYCVLLLRQLHAV 125          
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0A382V7X1_9ZZZZ (2-Hacid_dh domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382V7X1_9ZZZZ)

HSP 1 Score: 144 bits (364), Expect = 1.510e-42
Identity = 74/112 (66.07%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLARQLHVI 336
            ++ +RPALE AG EVV P IPGQ L GDALV AL GC GVVAGDD+FTA+V +RLP LR I+KWGIGVD ID   A   G  VTNTPG F  EVADV +AY V+LAR LH+I
Sbjct:   14 LEGFRPALEEAGIEVVAPSIPGQFLVGDALVEALAGCDGVVAGDDRFTADVLERLPGLRAIAKWGIGVDSIDFEAAERLGIEVTNTPGEFAAEVADVTLAYVVILARGLHLI 125          
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0A7V1V1R7_9BACT (Dihydrofolate reductase n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7V1V1R7_9BACT)

HSP 1 Score: 110 bits (274), Expect = 6.130e-27
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLARQLHVI 336
            ID +RP     G EV +P +  Q +    L+  ++G  G++AGDD+ TA V +R   LRVISKWG+G+D ID   AA RG  + +TPG F +EVADVAM Y ++LAR+LH I
Sbjct:   15 IDGYRPLFADCGIEVALPPVE-QRMTAPRLMDLIDGFDGIIAGDDELTAAVLERADRLRVISKWGVGIDSIDLAAAARRGIQIFHTPGVFADEVADVAMGYLILLARRLHTI 125          
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0A2R6J465_9EURY (2-Hacid_dh domain-containing protein n=1 Tax=Halobacteriales archaeon QS_5_70_15 TaxID=1919180 RepID=A0A2R6J465_9EURY)

HSP 1 Score: 101 bits (251), Expect = 2.230e-24
Identity = 54/110 (49.09%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLARQLH 330
            ID +   L + G    V D+  Q L+ D L+  L    G++AGDD+ TA V +  P L VI+KWGIG DGID   A   G  V NTPGAF +EVADV + YA+MLAR+LH
Sbjct:   36 IDDYADLLASYGIAYDVADVD-QQLDEDELLDLLPDYDGILAGDDELTARVIEASPRLEVIAKWGIGTDGIDFDAAEAHGVRVFNTPGAFADEVADVVIGYAIMLARELH 144          
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0A1M7P7U8_9HYPH (D-3-phosphoglycerate dehydrogenase n=1 Tax=Roseibium suaedae TaxID=735517 RepID=A0A1M7P7U8_9HYPH)

HSP 1 Score: 102 bits (255), Expect = 4.800e-24
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQD--RLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLAR 321
            +  +    E AG E +VP++ GQ L+ D +++ + G  G++AGDD    +V D  +  +L+ I KWGIGVDGID  HA + G  V NTPG F EEVADVA ++ +MLAR
Sbjct:   14 VSDFSGLFEKAGIEAIVPEVKGQQLDADEMLSLIEGIDGIIAGDDIINKKVIDAGKASKLKAIVKWGIGVDGIDLVHARSVGMPVFNTPGCFSEEVADVAYSHLLMLAR 122          
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0YTW0_LYNSP (D-isomer specific 2-hydroxyacid dehydrogenase family protein n=1 Tax=Lyngbya sp. (strain PCC 8106) TaxID=313612 RepID=A0YTW0_LYNSP)

HSP 1 Score: 102 bits (253), Expect = 7.930e-24
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLARQLH 330
            ID +R  L   G E+ VP +  Q  E + L+  ++   GV+AGDD FTA+V ++   L++++KWGIGVDGIDR  A   G +V NTP  F +EVADVA+ Y ++LAR LH
Sbjct:   16 IDIYRERLVEKGIELEVPSVVQQLSEAE-LLEIIDRFDGVIAGDDPFTAKVLEKGKRLKIVAKWGIGVDGIDRDAANRLGILVKNTPDVFSDEVADVALGYIILLARHLH 124          
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0A2E2Q2C1_9ACTN (Hydroxyacid dehydrogenase n=1 Tax=Nocardioides sp. TaxID=35761 RepID=A0A2E2Q2C1_9ACTN)

HSP 1 Score: 101 bits (252), Expect = 8.980e-24
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLARQLHVI 336
            +D  R  +  AG++V+ P +PGQH     L   + G  G++AGDD+      +  P+LRV+ +WGIG+D +D   AA  G  V NTPG F  EVAD AM Y ++LAR  H++
Sbjct:    5 LDAHRKRIIDAGYDVLSPQVPGQHFSSAELSDMMGGVAGLIAGDDELDRRFFECSPDLRVLIRWGIGMDSVDHQAAAEHGVTVRNTPGVFGGEVADSAMGYILLLARGHHLV 116          
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Match: A0A1J1LIQ2_9CYAN (D-isomer specific 2-hydroxyacid dehydrogenase family protein n=2 Tax=Planktothrix TaxID=54304 RepID=A0A1J1LIQ2_9CYAN)

HSP 1 Score: 101 bits (252), Expect = 1.090e-23
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAEVQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMAYAVMLARQLH 330
            ID +R        E+VVPDI  Q  E + L+  ++   GV+AGDD FTA+V  +   L++++KWGIGVD IDR  A   G +V NTP  F +EVADVA+ Y ++LAR LH
Sbjct:   16 IDHYRSFFAERNIEIVVPDIVQQMSEAE-LLEIIDQFDGVIAGDDPFTAKVLAQGKRLKIVAKWGIGVDSIDRDAAKELGILVKNTPDVFSDEVADVALGYIILLARHLH 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126464.5333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6U5S8_9ACTN3.070e-5780.36Dihydrofolate reductase n=1 Tax=Acidimicrobiaceae ... [more]
A0A800LR20_9ACTN9.150e-4870.54Dihydrofolate reductase n=1 Tax=Acidimicrobiia bac... [more]
A0A800IDQ7_9ACTN8.190e-4669.64Dihydrofolate reductase n=1 Tax=Acidimicrobiia bac... [more]
A0A382V7X1_9ZZZZ1.510e-4266.072-Hacid_dh domain-containing protein (Fragment) n=... [more]
A0A7V1V1R7_9BACT6.130e-2748.21Dihydrofolate reductase n=1 Tax=Nitrospirae bacter... [more]
A0A2R6J465_9EURY2.230e-2449.092-Hacid_dh domain-containing protein n=1 Tax=Halob... [more]
A0A1M7P7U8_9HYPH4.800e-2445.87D-3-phosphoglycerate dehydrogenase n=1 Tax=Roseibi... [more]
A0YTW0_LYNSP7.930e-2447.27D-isomer specific 2-hydroxyacid dehydrogenase fami... [more]
A0A2E2Q2C1_9ACTN8.980e-2441.96Hydroxyacid dehydrogenase n=1 Tax=Nocardioides sp.... [more]
A0A1J1LIQ2_9CYAN1.090e-2347.27D-isomer specific 2-hydroxyacid dehydrogenase fami... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126464contigM-pyrifera_M_contig126464:174..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score101.3
Seed ortholog evalue3e-19
Seed eggNOG ortholog313612.L8106_13395
KEGG rclassRC00031
KEGG koko:K00058
KEGG ReactionR01513
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
EggNOG OGs1G140@1117,COG0111@1,COG0111@2
EC1.1.1.399,1.1.1.95
COG Functional cat.C
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.0060585-CDS-M-pyrifera_M_contig126464:173..5091622815779.0060585-CDS-M-pyrifera_M_contig126464:173..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126464 174..509 -
1692277565.3265095-CDS-M-pyrifera_M_contig126464:173..5091692277565.3265095-CDS-M-pyrifera_M_contig126464:173..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126464 174..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126464.5333.1prot_M-pyrifera_M_contig126464.5333.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126464 174..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126464.5333.1

>prot_M-pyrifera_M_contig126464.5333.1 ID=prot_M-pyrifera_M_contig126464.5333.1|Name=mRNA_M-pyrifera_M_contig126464.5333.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
IDQWRPALEAAGFEVVVPDIPGQHLEGDALVTALNGCVGVVAGDDKFTAE
VQDRLPELRVISKWGIGVDGIDRPHAATRGTVVTNTPGAFDEEVADVAMA
YAVMLARQLHVI
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mRNA from alignment at M-pyrifera_M_contig126464:174..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126464.5333.1 ID=mRNA_M-pyrifera_M_contig126464.5333.1|Name=mRNA_M-pyrifera_M_contig126464.5333.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig126464:174..509- (Macrocystis pyrifera P11B4 male)
ATCGACCAGTGGCGCCCGGCGCTCGAAGCCGCCGGTTTCGAGGTCGTCGT GCCCGACATCCCCGGGCAGCACCTCGAAGGCGATGCCCTCGTCACGGCGC TCAACGGGTGTGTCGGTGTGGTCGCCGGCGACGACAAGTTCACCGCCGAG GTGCAGGACCGGCTTCCCGAGCTTCGGGTGATCTCGAAGTGGGGCATCGG CGTCGACGGGATCGATCGGCCTCATGCCGCAACCCGCGGCACGGTCGTCA CCAACACTCCGGGCGCGTTCGACGAAGAGGTGGCCGACGTCGCGATGGCC TACGCGGTCATGCTGGCGCGCCAGCTCCACGTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126464:174..509-

>mRNA_M-pyrifera_M_contig126464.5333.1 ID=mRNA_M-pyrifera_M_contig126464.5333.1|Name=mRNA_M-pyrifera_M_contig126464.5333.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig126464:174..509- (Macrocystis pyrifera P11B4 male)
ATCGACCAGTGGCGCCCGGCGCTCGAAGCCGCCGGTTTCGAGGTCGTCGT
GCCCGACATCCCCGGGCAGCACCTCGAAGGCGATGCCCTCGTCACGGCGC
TCAACGGGTGTGTCGGTGTGGTCGCCGGCGACGACAAGTTCACCGCCGAG
GTGCAGGACCGGCTTCCCGAGCTTCGGGTGATCTCGAAGTGGGGCATCGG
CGTCGACGGGATCGATCGGCCTCATGCCGCAACCCGCGGCACGGTCGTCA
CCAACACTCCGGGCGCGTTCGACGAAGAGGTGGCCGACGTCGCGATGGCC
TACGCGGTCATGCTGGCGCGCCAGCTCCACGTGATCATCGACCAGTGGCG
CCCGGCGCTCGAAGCCGCCGGTTTCGAGGTCGTCGTGCCCGACATCCCCG
GGCAGCACCTCGAAGGCGATGCCCTCGTCACGGCGCTCAACGGGTGTGTC
GGTGTGGTCGCCGGCGACGACAAGTTCACCGCCGAGGTGCAGGACCGGCT
TCCCGAGCTTCGGGTGATCTCGAAGTGGGGCATCGGCGTCGACGGGATCG
ATCGGCCTCATGCCGCAACCCGCGGCACGGTCGTCACCAACACTCCGGGC
GCGTTCGACGAAGAGGTGGCCGACGTCGCGATGGCCTACGCGGTCATGCT
GGCGCGCCAGCTCCACGTGATC
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