mRNA_M-pyrifera_M_contig126457.5331.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126457.5331.1
Unique NamemRNA_M-pyrifera_M_contig126457.5331.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: A0A6I6ACE4_9PLAN (CdiI_4 domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ACE4_9PLAN)

HSP 1 Score: 125 bits (315), Expect = 2.500e-36
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1
Query:    1 LKNRVSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLLQKLATIQVCRFPD 189
            LKNRVSYGLDVCFCEFPESL FDEEPFEGVRF IYE+EVIITEAEFEKLLQKLATIQVCRFPD
Sbjct:   33 LKNRVSYGLDVCFCEFPESLEFDEEPFEGVRFCIYEEEVIITEAEFEKLLQKLATIQVCRFPD 95          
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: A0A3E0WH86_9GAMM (CdiI_4 domain-containing protein n=1 Tax=Alkalilimnicola ehrlichii TaxID=351052 RepID=A0A3E0WH86_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 5.660e-10
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   13 VSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLL 150
             SYG +   C+FP+ L  DEEPFEGVRFR ++DEV+++E+ FE+ L
Sbjct:   42 TSYGDEYSACDFPDGLEEDEEPFEGVRFRYHDDEVVVSESNFEECL 87          
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: UPI001EFCA62D (ribonuclease toxin immunity protein CdiI n=1 Tax=Vibrio sp. Isolate23 TaxID=2908533 RepID=UPI001EFCA62D)

HSP 1 Score: 59.7 bits (143), Expect = 5.660e-10
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 LKNRVSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLL 150
            L   +SYG +   CEFP++L  DEEPFEGVRFR ++DEVI+++  F+ L+
Sbjct:   38 LLEGISYGDEYSSCEFPDNLEDDEEPFEGVRFRFFDDEVIVSDEVFKDLV 87          
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: A0A150MHH6_9BACI (CdiI_4 domain-containing protein n=2 Tax=Geobacillus TaxID=129337 RepID=A0A150MHH6_9BACI)

HSP 1 Score: 55.1 bits (131), Expect = 4.400e-8
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    1 LKNRVSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLLQKLATIQVCRFPDQ 192
            L     YG++   C FP  L+ D+EPFEGV F ++++EVII    F   L++   + +  FPDQ
Sbjct:   37 LSTGAGYGINAVDCTFPNDLDPDDEPFEGVMFALHDEEVIIDYHTFYYYLEQTCNMYIKNFPDQ 100          
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: UPI00105D4CB3 (ribonuclease toxin immunity protein CdiI n=1 Tax=Comamonas sp. JUb58 TaxID=2485114 RepID=UPI00105D4CB3)

HSP 1 Score: 54.3 bits (129), Expect = 8.610e-8
Identity = 21/58 (36.21%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   13 VSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLLQKLATIQVCRFP 186
            +  G D   CEFP  L  +++PF+GV+F ++EDEV++++ +F ++L++   I + R P
Sbjct:   37 IGRGFDDAVCEFPGELVSEDQPFKGVKFYLFEDEVVLSKLDFLRVLEEACLIYIARHP 94          
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: A0A2D8RDA2_9GAMM (CdiI_4 domain-containing protein n=1 Tax=Hahellaceae bacterium TaxID=2048971 RepID=A0A2D8RDA2_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 2.920e-7
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   13 VSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLL 150
              Y  +   CEFP  L+ D+EPFEGVRFR  +DE+++TE  F K L
Sbjct:   42 TGYASEYNGCEFPSDLDEDDEPFEGVRFRYDDDEIVVTEEAFRKCL 87          
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: A0A8E4SEU3_MYXXA (CdiI_4 domain-containing protein n=3 Tax=Myxococcus TaxID=32 RepID=A0A8E4SEU3_MYXXA)

HSP 1 Score: 49.7 bits (117), Expect = 3.710e-6
Identity = 25/60 (41.67%), Postives = 34/60 (56.67%), Query Frame = 1
Query:   10 RVSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLLQKLATIQVCRFPD 189
            RV  G+D   CEFP  L   E+ FEGVRF +YED V++ E  F+  L +   + V   P+
Sbjct:   26 RVGAGIDGAQCEFPGGLEPWEQEFEGVRFSLYEDVVVVEEPVFQMFLLEACRMYVKDHPE 85          
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: UPI0012FD64C9 (ribonuclease toxin immunity protein CdiI n=1 Tax=Delftia acidovorans TaxID=80866 RepID=UPI0012FD64C9)

HSP 1 Score: 49.7 bits (117), Expect = 4.630e-6
Identity = 22/61 (36.07%), Postives = 37/61 (60.66%), Query Frame = 1
Query:    7 NRVSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLLQKLATIQVCRFPD 189
            NR+  G +   CEFPE +   ++ F+GVRF I+ +EVII+   F  +L ++ +I + +  D
Sbjct:   35 NRIGAGFNDATCEFPEEVESGDDYFDGVRFSIFNEEVIISNEVFFDILSQVCSIYISKNKD 95          
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: A0A3A8SU93_9DELT (CdiI_4 domain-containing protein n=3 Tax=unclassified Corallococcus TaxID=2685029 RepID=A0A3A8SU93_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 7.070e-6
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 LKNRVSYGLD-VCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLLQKLATIQVCRFPD 189
            L N + YG + +  CEFP SL+  EE F+GVRF IYE+EVI+  + F +     A   V  +P+
Sbjct:   35 LLNGIGYGFEGILSCEFPGSLDPWEERFDGVRFSIYEEEVIVDYSVFVRFALTWAQAHVKAWPE 98          
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Match: UPI001127846A (ribonuclease toxin immunity protein CdiI n=1 Tax=Myxococcus xanthus TaxID=34 RepID=UPI001127846A)

HSP 1 Score: 48.5 bits (114), Expect = 2.330e-5
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 1
Query:   10 RVSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLLQKLATIQVCRFPD 189
            RV   +D   CEFP  L+  E+ FEGVRF +YED V++ E  F+  L +   + V   P+
Sbjct:   71 RVGAEIDGAHCEFPGDLDPWEQKFEGVRFSLYEDVVVVVEPVFQMFLLEACRMHVKDHPE 130          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126457.5331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6I6ACE4_9PLAN2.500e-3695.24CdiI_4 domain-containing protein n=2 Tax=Gimesia T... [more]
A0A3E0WH86_9GAMM5.660e-1054.35CdiI_4 domain-containing protein n=1 Tax=Alkalilim... [more]
UPI001EFCA62D5.660e-1052.00ribonuclease toxin immunity protein CdiI n=1 Tax=V... [more]
A0A150MHH6_9BACI4.400e-839.06CdiI_4 domain-containing protein n=2 Tax=Geobacill... [more]
UPI00105D4CB38.610e-836.21ribonuclease toxin immunity protein CdiI n=1 Tax=C... [more]
A0A2D8RDA2_9GAMM2.920e-750.00CdiI_4 domain-containing protein n=1 Tax=Hahellace... [more]
A0A8E4SEU3_MYXXA3.710e-641.67CdiI_4 domain-containing protein n=3 Tax=Myxococcu... [more]
UPI0012FD64C94.630e-636.07ribonuclease toxin immunity protein CdiI n=1 Tax=D... [more]
A0A3A8SU93_9DELT7.070e-642.19CdiI_4 domain-containing protein n=3 Tax=unclassif... [more]
UPI001127846A2.330e-540.00ribonuclease toxin immunity protein CdiI n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126457contigM-pyrifera_M_contig126457:314..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.9323695-CDS-M-pyrifera_M_contig126457:313..5051622815778.9323695-CDS-M-pyrifera_M_contig126457:313..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126457 314..505 -
1692277565.3037553-CDS-M-pyrifera_M_contig126457:313..5051692277565.3037553-CDS-M-pyrifera_M_contig126457:313..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126457 314..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126457.5331.1prot_M-pyrifera_M_contig126457.5331.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126457 314..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126457.5331.1

>prot_M-pyrifera_M_contig126457.5331.1 ID=prot_M-pyrifera_M_contig126457.5331.1|Name=mRNA_M-pyrifera_M_contig126457.5331.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
LKNRVSYGLDVCFCEFPESLNFDEEPFEGVRFRIYEDEVIITEAEFEKLL
QKLATIQVCRFPDQ
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mRNA from alignment at M-pyrifera_M_contig126457:314..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126457.5331.1 ID=mRNA_M-pyrifera_M_contig126457.5331.1|Name=mRNA_M-pyrifera_M_contig126457.5331.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig126457:314..505- (Macrocystis pyrifera P11B4 male)
CTCAAAAACCGGGTCAGCTATGGTTTGGATGTTTGTTTCTGTGAATTTCC TGAGTCTCTGAATTTTGATGAAGAGCCCTTTGAAGGTGTGCGTTTCCGGA TCTATGAGGATGAGGTCATTATCACAGAAGCAGAATTCGAAAAGCTGCTT CAGAAGTTAGCCACCATTCAGGTCTGTCGGTTTCCCGATCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126457:314..505-

>mRNA_M-pyrifera_M_contig126457.5331.1 ID=mRNA_M-pyrifera_M_contig126457.5331.1|Name=mRNA_M-pyrifera_M_contig126457.5331.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig126457:314..505- (Macrocystis pyrifera P11B4 male)
CTCAAAAACCGGGTCAGCTATGGTTTGGATGTTTGTTTCTGTGAATTTCC
TGAGTCTCTGAATTTTGATGAAGAGCCCTTTGAAGGTGTGCGTTTCCGGA
TCTATGAGGATGAGGTCATTATCACAGAAGCAGAATTCGAAAAGCTGCTT
CAGAAGTTAGCCACCATTCAGGTCTGTCGGTTTCCCGATCAGCTCAAAAA
CCGGGTCAGCTATGGTTTGGATGTTTGTTTCTGTGAATTTCCTGAGTCTC
TGAATTTTGATGAAGAGCCCTTTGAAGGTGTGCGTTTCCGGATCTATGAG
GATGAGGTCATTATCACAGAAGCAGAATTCGAAAAGCTGCTTCAGAAGTT
AGCCACCATTCAGGTCTGTCGGTTTCCCGATCAG
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