mRNA_M-pyrifera_M_contig102483.533.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102483.533.1
Unique NamemRNA_M-pyrifera_M_contig102483.533.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: UPI001D14E528 (HEAT repeat domain-containing protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=UPI001D14E528)

HSP 1 Score: 273 bits (698), Expect = 3.770e-84
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            SFK+AEG EVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG
Sbjct:   48 SFKVAEGFEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 181
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BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: UPI001E5E328B (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI001E5E328B)

HSP 1 Score: 255 bits (652), Expect = 4.730e-84
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            SFK+AEG EVNLYAADPQIAKPIQMNFD QGRLWIASSEIYPHIKPGEKANDKILVVED+DGDG ADKTTVFADGLLIPTAV+PGDGGAYVGNSTELL LKDTDGDGKADVRKTEL GFGTEDTHHI+HTLR G
Sbjct:   48 SFKVAEGFEVNLYAADPQIAKPIQMNFDAQGRLWIASSEIYPHIKPGEKANDKILVVEDQDGDGTADKTTVFADGLLIPTAVIPGDGGAYVGNSTELLFLKDTDGDGKADVRKTELAGFGTEDTHHILHTLRRG 181
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BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: A0A517PS75_9PLAN (Cytochrome c domain-containing protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PS75_9PLAN)

HSP 1 Score: 273 bits (698), Expect = 4.600e-83
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            SFK+AEG EVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG
Sbjct:   48 SFKVAEGFEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 181
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BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: A0A517QAB5_9PLAN (Cytochrome c domain-containing protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QAB5_9PLAN)

HSP 1 Score: 265 bits (678), Expect = 2.920e-80
Identity = 127/134 (94.78%), Postives = 131/134 (97.76%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            SFK+AEG EVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGE ANDKIL+VEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTEL GFGTEDTHHI+HTLR+G
Sbjct:   48 SFKVAEGFEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGETANDKILIVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELAGFGTEDTHHILHTLRWG 181
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BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: A0A517VUM7_9PLAN (Cytochrome c domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VUM7_9PLAN)

HSP 1 Score: 261 bits (666), Expect = 1.390e-78
Identity = 125/134 (93.28%), Postives = 130/134 (97.01%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            SFK+AEG EVNLYAADPQIAKPIQMNFDPQGRLWIA+SEIYPHIKPGEKANDKILVVEDKDGDG ADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDT+GDGKADVRKT L GFGTEDTHHI+HTLR+G
Sbjct:   48 SFKVAEGFEVNLYAADPQIAKPIQMNFDPQGRLWIAASEIYPHIKPGEKANDKILVVEDKDGDGTADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTNGDGKADVRKTVLAGFGTEDTHHILHTLRWG 181
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BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: A0A518IFW8_9PLAN (Cytochrome c domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IFW8_9PLAN)

HSP 1 Score: 259 bits (662), Expect = 5.010e-78
Identity = 125/134 (93.28%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            SFK AEG EVNLYAADPQIAKPIQMNFD QGRLWIA+SEIYPHIKPGEKANDKILVVEDKDGDG ADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKT L GFGTEDTHHI+HTLR+G
Sbjct:   48 SFKFAEGFEVNLYAADPQIAKPIQMNFDAQGRLWIAASEIYPHIKPGEKANDKILVVEDKDGDGTADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTVLAGFGTEDTHHILHTLRWG 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: A0A517VH63_9PLAN (Cytochrome c domain-containing protein n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VH63_9PLAN)

HSP 1 Score: 257 bits (656), Expect = 3.430e-77
Identity = 125/134 (93.28%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            SFK+AEG EVNLYAADPQIAKPIQMNFD QGRLWIASSEIYPHIKPGEKANDKILVVED+DGDG ADKTTVFADGLLIPTAVMPGDGGAYVGNSTELL LKDTDGDGKADVRKTEL GFGTEDTHHI+HTLR G
Sbjct:   48 SFKVAEGFEVNLYAADPQIAKPIQMNFDAQGRLWIASSEIYPHIKPGEKANDKILVVEDQDGDGTADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLFLKDTDGDGKADVRKTELAGFGTEDTHHILHTLRRG 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: A0A3L7V5G4_9BACT (Sorbosone dehydrogenase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7V5G4_9BACT)

HSP 1 Score: 225 bits (574), Expect = 1.000e-66
Identity = 104/134 (77.61%), Postives = 121/134 (90.30%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            SF++A+G EV L+AADP+IAKPIQMNFDPQGRLW+ASSE+YP I+PG+KANDKIL++ED + DG+ADKTTVFADGLLIPT V PGDGG YV NSTELLHL DTDGDGKAD R+  L+GFGTEDTHHI+HTLR+G
Sbjct:   45 SFQVADGFEVKLFAADPRIAKPIQMNFDPQGRLWVASSEVYPQIEPGQKANDKILILEDTNRDGLADKTTVFADGLLIPTGVEPGDGGVYVANSTELLHLSDTDGDGKADRRRVVLSGFGTEDTHHILHTLRWG 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: A0A2E7CX54_9PLAN (Sorbosone dehydrogenase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7CX54_9PLAN)

HSP 1 Score: 224 bits (571), Expect = 1.770e-65
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            SF++AEG EVNLYA+DP+IAKPIQMNFD QGRLWIASSE+YP IKPG+KA DKILVVED+DGDG A+KTTVF DGLLIPT V PGDGGAYV NSTEL+H KDTDGD KAD     L+GFGTEDTHHI+HTLR+G
Sbjct:   45 SFQVAEGFEVNLYASDPRIAKPIQMNFDSQGRLWIASSEVYPQIKPGQKATDKILVVEDRDGDGTAEKTTVFVDGLLIPTGVEPGDGGAYVANSTELVHFKDTDGDLKADETNVVLSGFGTEDTHHILHTLRWG 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Match: A0A142WXW5_9PLAN (Cytochrome c n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WXW5_9PLAN)

HSP 1 Score: 223 bits (567), Expect = 6.210e-65
Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = 1 
Query:    1 SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKANDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHLKDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG 402
            +F L EG EVNL+AADPQIAKPIQMNFDPQGRLWI SSE+YP I+PG+ ANDK+L+VEDK+ DGVAD T+VFADGLLIPT + PGDGGAYVG STELL LKDTDGDGKAD R+  L+GFGTEDTHHI+HT R+G
Sbjct:   38 TFVLPEGFEVNLFAADPQIAKPIQMNFDPQGRLWIVSSEVYPQIEPGQVANDKVLIVEDKNHDGVADSTSVFADGLLIPTGIAPGDGGAYVGASTELLFLKDTDGDGKADHRRVVLSGFGTEDTHHIIHTFRWG 171
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102483.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D14E5283.770e-8498.51HEAT repeat domain-containing protein n=1 Tax=Gime... [more]
UPI001E5E328B4.730e-8492.54hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
A0A517PS75_9PLAN4.600e-8398.51Cytochrome c domain-containing protein n=5 Tax=Gim... [more]
A0A517QAB5_9PLAN2.920e-8094.78Cytochrome c domain-containing protein n=3 Tax=Gim... [more]
A0A517VUM7_9PLAN1.390e-7893.28Cytochrome c domain-containing protein n=2 Tax=Gim... [more]
A0A518IFW8_9PLAN5.010e-7893.28Cytochrome c domain-containing protein n=2 Tax=Gim... [more]
A0A517VH63_9PLAN3.430e-7793.28Cytochrome c domain-containing protein n=10 Tax=Pl... [more]
A0A3L7V5G4_9BACT1.000e-6677.61Sorbosone dehydrogenase (Fragment) n=1 Tax=Plancto... [more]
A0A2E7CX54_9PLAN1.770e-6579.10Sorbosone dehydrogenase n=1 Tax=Planctomycetaceae ... [more]
A0A142WXW5_9PLAN6.210e-6577.61Cytochrome c n=1 Tax=Planctomyces sp. SH-PL14 TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102483contigM-pyrifera_M_contig102483:5..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score256.1
Seed ortholog evalue8.8e-66
Seed eggNOG ortholog344747.PM8797T_24331
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dehydrogenase
EggNOG OGs2IXWZ@203682,COG2010@1,COG2010@2,COG2133@1,COG2133@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.7329621-CDS-M-pyrifera_M_contig102483:4..4061622815527.7329621-CDS-M-pyrifera_M_contig102483:4..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102483 5..406 +
1692277450.077836-CDS-M-pyrifera_M_contig102483:4..4061692277450.077836-CDS-M-pyrifera_M_contig102483:4..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102483 5..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102483.533.1prot_M-pyrifera_M_contig102483.533.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102483 5..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102483.533.1

>prot_M-pyrifera_M_contig102483.533.1 ID=prot_M-pyrifera_M_contig102483.533.1|Name=mRNA_M-pyrifera_M_contig102483.533.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
SFKLAEGIEVNLYAADPQIAKPIQMNFDPQGRLWIASSEIYPHIKPGEKA
NDKILVVEDKDGDGVADKTTVFADGLLIPTAVMPGDGGAYVGNSTELLHL
KDTDGDGKADVRKTELTGFGTEDTHHIVHTLRYG
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mRNA from alignment at M-pyrifera_M_contig102483:5..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102483.533.1 ID=mRNA_M-pyrifera_M_contig102483.533.1|Name=mRNA_M-pyrifera_M_contig102483.533.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig102483:5..406+ (Macrocystis pyrifera P11B4 male)
TCGTTCAAACTCGCGGAAGGGATCGAAGTGAACCTGTATGCCGCCGATCC
GCAGATCGCCAAACCGATTCAGATGAACTTTGACCCACAGGGACGGCTCT
GGATTGCTTCATCGGAAATTTATCCGCATATCAAACCGGGTGAAAAGGCC
AACGACAAGATTCTGGTCGTCGAAGATAAAGATGGAGACGGCGTTGCAGA
TAAGACGACGGTATTCGCCGACGGTCTGCTGATTCCCACAGCAGTGATGC
CGGGCGACGGCGGTGCTTATGTCGGAAACAGCACCGAACTGCTGCATCTG
AAAGACACTGACGGAGATGGTAAGGCGGATGTCCGCAAAACTGAGCTGAC
CGGTTTCGGTACCGAGGATACACACCATATTGTGCACACCCTTCGCTATG
GG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102483:5..406+

>mRNA_M-pyrifera_M_contig102483.533.1 ID=mRNA_M-pyrifera_M_contig102483.533.1|Name=mRNA_M-pyrifera_M_contig102483.533.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig102483:5..406+ (Macrocystis pyrifera P11B4 male)
TCGTTCAAACTCGCGGAAGGGATCGAAGTGAACCTGTATGCCGCCGATCC
GCAGATCGCCAAACCGATTCAGATGAACTTTGACCCACAGGGACGGCTCT
GGATTGCTTCATCGGAAATTTATCCGCATATCAAACCGGGTGAAAAGGCC
AACGACAAGATTCTGGTCGTCGAAGATAAAGATGGAGACGGCGTTGCAGA
TAAGACGACGGTATTCGCCGACGGTCTGCTGATTCCCACAGCAGTGATGC
CGGGCGACGGCGGTGCTTATGTCGGAAACAGCACCGAACTGCTGCATCTG
AAAGACACTGACGGAGATGGTAAGGCGGATGTCCGCAAAACTGAGCTGAC
CGGTTTCGGTACCGAGGATACACACCATATTGTGCACACCCTTCGCTATG
GGTCGTTCAAACTCGCGGAAGGGATCGAAGTGAACCTGTATGCCGCCGAT
CCGCAGATCGCCAAACCGATTCAGATGAACTTTGACCCACAGGGACGGCT
CTGGATTGCTTCATCGGAAATTTATCCGCATATCAAACCGGGTGAAAAGG
CCAACGACAAGATTCTGGTCGTCGAAGATAAAGATGGAGACGGCGTTGCA
GATAAGACGACGGTATTCGCCGACGGTCTGCTGATTCCCACAGCAGTGAT
GCCGGGCGACGGCGGTGCTTATGTCGGAAACAGCACCGAACTGCTGCATC
TGAAAGACACTGACGGAGATGGTAAGGCGGATGTCCGCAAAACTGAGCTG
ACCGGTTTCGGTACCGAGGATACACACCATATTGTGCACACCCTTCGCTA
TGGG
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