mRNA_M-pyrifera_M_contig126457.5330.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126457.5330.1
Unique NamemRNA_M-pyrifera_M_contig126457.5330.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126457.5330.1 vs. uniprot
Match: A0A2E7KD91_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KD91_9PLAN)

HSP 1 Score: 150 bits (378), Expect = 3.830e-44
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:    1 PSAEVDLTALELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLKPALETADPDNSAVNNLKTFLEKCDATQEQ 237
            PSAEVDLTALELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLKPALETADPDN AV NLKTFLEKCDATQ +
Sbjct:  131 PSAEVDLTALELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLKPALETADPDNCAVKNLKTFLEKCDATQNE 209
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BLAST of mRNA_M-pyrifera_M_contig126457.5330.1 vs. uniprot
Match: A0A5A8B6P6_9PLAN (HEAT repeat domain-containing protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A5A8B6P6_9PLAN)

HSP 1 Score: 140 bits (353), Expect = 2.560e-40
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 PSAEVDLTALELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLKPALETA---DPDNSAVNNLKTFLEKCDATQEQ 237
            PSAE+D T LELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLKPALETA   DPDN AV NLKTFLEKCDATQ +
Sbjct:  131 PSAEIDRTVLELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLKPALETAETADPDNCAVKNLKTFLEKCDATQNE 212
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BLAST of mRNA_M-pyrifera_M_contig126457.5330.1 vs. uniprot
Match: A0A517PZH5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517PZH5_9PLAN)

HSP 1 Score: 105 bits (262), Expect = 1.280e-26
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    4 SAEVDLTALELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLKPALETADPDNSAVNNLKTFLEKCDATQEQ 237
            S EVDLTA++LM+HQSEAIR EA+ELLLIRI RGI++SPE+CT+REQL+PAL+ ADP+  A   LK FLE+C   Q +
Sbjct:  132 STEVDLTAVKLMHHQSEAIRREAKELLLIRIIRGIDLSPEVCTVREQLRPALDRADPEGCAAKILKAFLEECGPAQNE 209
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BLAST of mRNA_M-pyrifera_M_contig126457.5330.1 vs. uniprot
Match: A0A518FGF9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FGF9_9PLAN)

HSP 1 Score: 102 bits (255), Expect = 1.440e-25
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:    4 SAEVDLTALELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLKPALETADPDNSAVNNLKTFLEKCDATQEQ 237
            S EVDLTA++LM+HQ E IR  A+ELLLIRI RGI++SPE+CT+REQL+PALE ADP++ A   LK FLE+C   Q +
Sbjct:  132 STEVDLTAVKLMHHQDETIRTAAKELLLIRITRGIDLSPEVCTVREQLRPALERADPESCAAKILKAFLEECGPAQNE 209
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BLAST of mRNA_M-pyrifera_M_contig126457.5330.1 vs. uniprot
Match: A0A2E2C571_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C571_9PLAN)

HSP 1 Score: 74.3 bits (181), Expect = 1.560e-14
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    4 SAEVDLTALELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLKPALETADPDNSAVNNLKTFLEKCDATQE 234
            S E+D T L L++   +++R    ELLL RI R +E+SPELC  R +LKP LE +DP +S+   LK FLE+C   ++
Sbjct:  132 SPEIDQTILTLIDDPHQSVRLATEELLLTRITRELEMSPELCRARNRLKPYLEDSDPKHSSTKRLKEFLERCKMNEQ 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126457.5330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2E7KD91_9PLAN3.830e-4494.94Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A5A8B6P6_9PLAN2.560e-4087.80HEAT repeat domain-containing protein n=3 Tax=Gime... [more]
A0A517PZH5_9PLAN1.280e-2665.38Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A518FGF9_9PLAN1.440e-2562.82Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A2E2C571_9PLAN1.560e-1445.45Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126457contigM-pyrifera_M_contig126457:3..242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.8961945-CDS-M-pyrifera_M_contig126457:2..2421622815778.8961945-CDS-M-pyrifera_M_contig126457:2..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126457 3..242 +
1692277565.2920578-CDS-M-pyrifera_M_contig126457:2..2421692277565.2920578-CDS-M-pyrifera_M_contig126457:2..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126457 3..242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126457.5330.1prot_M-pyrifera_M_contig126457.5330.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126457 3..242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126457.5330.1

>prot_M-pyrifera_M_contig126457.5330.1 ID=prot_M-pyrifera_M_contig126457.5330.1|Name=mRNA_M-pyrifera_M_contig126457.5330.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
PSAEVDLTALELMNHQSEAIRFEARELLLIRIGRGIEVSPELCTIREQLK
PALETADPDNSAVNNLKTFLEKCDATQEQ*
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mRNA from alignment at M-pyrifera_M_contig126457:3..242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126457.5330.1 ID=mRNA_M-pyrifera_M_contig126457.5330.1|Name=mRNA_M-pyrifera_M_contig126457.5330.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig126457:3..242+ (Macrocystis pyrifera P11B4 male)
CCTTCGGCTGAGGTCGATCTCACTGCACTGGAACTGATGAACCACCAGAG
CGAAGCCATCCGCTTTGAAGCCAGGGAGTTGCTGCTGATTCGCATTGGCC
GCGGAATTGAGGTCTCACCAGAGCTTTGCACGATCCGTGAGCAGTTGAAG
CCTGCACTCGAAACTGCAGACCCTGATAATAGCGCTGTAAATAATCTCAA
AACGTTTCTGGAGAAGTGCGACGCGACTCAGGAGCAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126457:3..242+

>mRNA_M-pyrifera_M_contig126457.5330.1 ID=mRNA_M-pyrifera_M_contig126457.5330.1|Name=mRNA_M-pyrifera_M_contig126457.5330.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig126457:3..242+ (Macrocystis pyrifera P11B4 male)
CCTTCGGCTGAGGTCGATCTCACTGCACTGGAACTGATGAACCACCAGAG
CGAAGCCATCCGCTTTGAAGCCAGGGAGTTGCTGCTGATTCGCATTGGCC
GCGGAATTGAGGTCTCACCAGAGCTTTGCACGATCCGTGAGCAGTTGAAG
CCTGCACTCGAAACTGCAGACCCTGATAATAGCGCTGTAAATAATCTCAA
AACGTTTCTGGAGAAGTGCGACGCGACTCAGGAGCAGTAACCTTCGGCTG
AGGTCGATCTCACTGCACTGGAACTGATGAACCACCAGAGCGAAGCCATC
CGCTTTGAAGCCAGGGAGTTGCTGCTGATTCGCATTGGCCGCGGAATTGA
GGTCTCACCAGAGCTTTGCACGATCCGTGAGCAGTTGAAGCCTGCACTCG
AAACTGCAGACCCTGATAATAGCGCTGTAAATAATCTCAAAACGTTTCTG
GAGAAGTGCGACGCGACTCAGGAGCAGTAA
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