mRNA_M-pyrifera_M_contig126452.5327.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: B7GA09_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA09_PHATC) HSP 1 Score: 100 bits (250), Expect = 3.780e-25 Identity = 50/78 (64.10%), Postives = 66/78 (84.62%), Query Frame = 1
Query: 1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
SYSR+VG+ITKL+ +L +LPADN FR+ +TD++L KL MG+I +TKSL K E VTVSA+ RRRLPV+MVRLKMA+++
Sbjct: 45 SYSRIVGMITKLSAKLKTLPADNSFRIAMTDQLLAKLNDMGVITTTKSLQKAEEVTVSAICRRRLPVIMVRLKMAESI 122
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: K0R286_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R286_THAOC) HSP 1 Score: 95.1 bits (235), Expect = 6.890e-23 Identity = 44/77 (57.14%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADN 231
SY+++ G +TKLA +L +LPAD+ FR+ +TD++LEKLY++G++ +TKSL K E +T SAL RRRLP+VMVR+KMA
Sbjct: 45 SYTQICGQVTKLANKLKTLPADDSFRIAMTDQLLEKLYNLGILTTTKSLKKAEEITASALCRRRLPIVMVRMKMAQT 121
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A7S1VV42_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV42_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 4.400e-21 Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADN 231
SY+R+ G++TKLA +L +L D+ FR+ +TD++L+KL+ MGLI + KSL+K E +T SAL RRR+PVVMVR+KMA+
Sbjct: 45 SYNRICGMVTKLAAKLKTLKQDDPFRIAMTDQLLQKLFDMGLITTKKSLLKAEELTASALCRRRIPVVMVRMKMAET 121
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A7S2NY68_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NY68_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 8.780e-21 Identity = 41/78 (52.56%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
SY R+ G++T+L +L +LP D+ FR+ +T+++LEKLY+MG+I+ SL+K E +TVSA+ RRRLPV+MVRL+MA+ +
Sbjct: 45 SYDRIRGMVTRLCAKLKTLPNDDSFRIAMTEQLLEKLYNMGVINEKSSLLKAENITVSAICRRRLPVLMVRLRMAETI 122
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 9.420e-21 Identity = 43/77 (55.84%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 4 YSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
Y+++VGLITKL RL +L A ++FR+++T+++LEKL++MG+I++ KSL K E +VS+ RRRLPVVMVRLKM++ L
Sbjct: 46 YNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETL 122
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A067CYP3_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CYP3_SAPPC) HSP 1 Score: 89.4 bits (220), Expect = 1.300e-20 Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 4 YSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
Y+++VG I +L RL PA++ FR++ T+ +LEKLY MGLI+ TKSL+K E + VSA+ RRRLPVVMVRLKM++N+
Sbjct: 46 YNKVVGEIGRLVSRLKKRPANDPFRIKTTEALLEKLYQMGLINGTKSLLKAEELNVSAMCRRRLPVVMVRLKMSENI 122
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A024TJP5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TJP5_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.670e-20 Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 4 YSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
Y++LVG I ++ RL PA++ FR++ T+++LEKLY MG+I+STKSL+K E + VS+ RRRLPVVMVRLKM++N+
Sbjct: 46 YNKLVGDIGRVVARLKKRPANDPFRIKTTEKLLEKLYHMGIINSTKSLLKAEELNVSSFCRRRLPVVMVRLKMSENI 122
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A7S0ARR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ARR3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.880e-20 Identity = 40/77 (51.95%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADN 231
+YS++ G +TKL+ +L +L AD+ FR+ +T+++L+KL+ MG++ + KSL K E +T SAL RRRLPVVMVR+KMA+
Sbjct: 37 AYSKICGQVTKLSAKLKTLKADDSFRIAMTEQLLDKLFDMGIVTTKKSLQKAEEITASALCRRRLPVVMVRMKMAET 113
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A6U3VKU4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VKU4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 6.990e-20 Identity = 40/78 (51.28%), Postives = 62/78 (79.49%), Query Frame = 1
Query: 1 SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADNL 234
+Y+++ GL+TKL +L +LP D+ FR+ +T+++L KL+ MG++ +TKSL K E +T +AL RRRLPVVMVR+KM++ L
Sbjct: 45 AYNKICGLVTKLTAKLKNLPPDDPFRIHMTEQLLTKLHDMGILTTTKSLQKAETITATALCRRRLPVVMVRMKMSETL 122
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Match: A0A7S1U2R4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2R4_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.030e-19 Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 4 YSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVKLERVTVSALARRRLPVVMVRLKMADN 231
Y+RL GLITKL +L LP + FR++ +D++L KLY +G+ID+ KSL K ER++ +A RRRLPVVMVRLKMA+
Sbjct: 46 YNRLAGLITKLVAQLKKLPPSDPFRIKKSDKLLGKLYELGVIDTKKSLEKAERISAAAFCRRRLPVVMVRLKMAET 121 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126452.5327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig126452.5327.1 >prot_M-pyrifera_M_contig126452.5327.1 ID=prot_M-pyrifera_M_contig126452.5327.1|Name=mRNA_M-pyrifera_M_contig126452.5327.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp SYSRLVGLITKLARRLSSLPADNKFRVRVTDEVLEKLYSMGLIDSTKSLVback to top mRNA from alignment at M-pyrifera_M_contig126452:3..236- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig126452.5327.1 ID=mRNA_M-pyrifera_M_contig126452.5327.1|Name=mRNA_M-pyrifera_M_contig126452.5327.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig126452:3..236- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig126452:3..236- >mRNA_M-pyrifera_M_contig126452.5327.1 ID=mRNA_M-pyrifera_M_contig126452.5327.1|Name=mRNA_M-pyrifera_M_contig126452.5327.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig126452:3..236- (Macrocystis pyrifera P11B4 male)back to top |