mRNA_M-pyrifera_M_contig126448.5325.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126448.5325.1
Unique NamemRNA_M-pyrifera_M_contig126448.5325.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126448.5325.1 vs. uniprot
Match: A0A2A5D880_9BACT (Glyco_hydro_20b domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5D880_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.910e-6
Identity = 34/138 (24.64%), Postives = 63/138 (45.65%), Query Frame = 1 
Query:    1 MWLVSSLLALSALALTPTPKDLSVNEDDTFYLRGDTMVVLPDAFVDQRDTLLAPLAPALAGDPQVAPASRVDKVPKAVYLATVAHRGALEKRKLRRYYTDSDTLPPAGYRITVDKLGVVLVAADEAGLAYGVHALAGL 414
            MW   ++  LS     P P+ + V  D  F +  +  V++ ++    +   +      L     +  AS  +   KA++++ V       +R ++      D  P  GYR+ VD+ G++LV AD+ GL +G+  L+ L
Sbjct:    1 MWSWVAVTVLSLTPFAPAPQSMEVGSDSVFTVTANMPVIIANSTPSSQIRTIEKTFNGLGMSLPIVRASGYEIGEKAIHISVVGQFSERSQRSMKSRIDAMDPTPAGGYRLVVDRTGIMLVGADQIGLRHGLITLSNL 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126448.5325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2A5D880_9BACT1.910e-624.64Glyco_hydro_20b domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126448contigM-pyrifera_M_contig126448:84..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size423
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.6580393-CDS-M-pyrifera_M_contig126448:83..5061622815778.6580393-CDS-M-pyrifera_M_contig126448:83..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126448 84..506 +
1692277565.2065184-CDS-M-pyrifera_M_contig126448:83..5061692277565.2065184-CDS-M-pyrifera_M_contig126448:83..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126448 84..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126448.5325.1prot_M-pyrifera_M_contig126448.5325.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126448 84..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126448.5325.1

>prot_M-pyrifera_M_contig126448.5325.1 ID=prot_M-pyrifera_M_contig126448.5325.1|Name=mRNA_M-pyrifera_M_contig126448.5325.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MWLVSSLLALSALALTPTPKDLSVNEDDTFYLRGDTMVVLPDAFVDQRDT
LLAPLAPALAGDPQVAPASRVDKVPKAVYLATVAHRGALEKRKLRRYYTD
SDTLPPAGYRITVDKLGVVLVAADEAGLAYGVHALAGLVAE
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mRNA from alignment at M-pyrifera_M_contig126448:84..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126448.5325.1 ID=mRNA_M-pyrifera_M_contig126448.5325.1|Name=mRNA_M-pyrifera_M_contig126448.5325.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig126448:84..506+ (Macrocystis pyrifera P11B4 male)
ATGTGGTTAGTTTCCTCTCTCCTGGCCCTGAGCGCCTTGGCACTGACGCC
CACGCCGAAGGACCTGTCCGTCAACGAAGACGACACCTTCTATCTGCGGG
GCGACACCATGGTCGTCCTTCCCGATGCCTTCGTGGATCAGCGGGACACT
TTGTTGGCCCCCCTCGCACCCGCACTGGCGGGGGATCCCCAGGTGGCGCC
CGCATCACGGGTGGACAAGGTGCCCAAGGCCGTCTACCTGGCGACGGTGG
CCCATCGGGGGGCCCTGGAGAAAAGGAAGCTTCGACGCTACTACACTGAT
AGTGACACCCTGCCCCCCGCGGGTTATCGGATTACGGTGGACAAATTGGG
CGTCGTCCTCGTGGCGGCCGACGAGGCGGGGCTGGCCTATGGGGTTCATG
CTCTCGCGGGACTGGTGGCGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126448:84..506+

>mRNA_M-pyrifera_M_contig126448.5325.1 ID=mRNA_M-pyrifera_M_contig126448.5325.1|Name=mRNA_M-pyrifera_M_contig126448.5325.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig126448:84..506+ (Macrocystis pyrifera P11B4 male)
ATGTGGTTAGTTTCCTCTCTCCTGGCCCTGAGCGCCTTGGCACTGACGCC
CACGCCGAAGGACCTGTCCGTCAACGAAGACGACACCTTCTATCTGCGGG
GCGACACCATGGTCGTCCTTCCCGATGCCTTCGTGGATCAGCGGGACACT
TTGTTGGCCCCCCTCGCACCCGCACTGGCGGGGGATCCCCAGGTGGCGCC
CGCATCACGGGTGGACAAGGTGCCCAAGGCCGTCTACCTGGCGACGGTGG
CCCATCGGGGGGCCCTGGAGAAAAGGAAGCTTCGACGCTACTACACTGAT
AGTGACACCCTGCCCCCCGCGGGTTATCGGATTACGGTGGACAAATTGGG
CGTCGTCCTCGTGGCGGCCGACGAGGCGGGGCTGGCCTATGGGGTTCATG
CTCTCGCGGGACTGGTGGCGGAGATGTGGTTAGTTTCCTCTCTCCTGGCC
CTGAGCGCCTTGGCACTGACGCCCACGCCGAAGGACCTGTCCGTCAACGA
AGACGACACCTTCTATCTGCGGGGCGACACCATGGTCGTCCTTCCCGATG
CCTTCGTGGATCAGCGGGACACTTTGTTGGCCCCCCTCGCACCCGCACTG
GCGGGGGATCCCCAGGTGGCGCCCGCATCACGGGTGGACAAGGTGCCCAA
GGCCGTCTACCTGGCGACGGTGGCCCATCGGGGGGCCCTGGAGAAAAGGA
AGCTTCGACGCTACTACACTGATAGTGACACCCTGCCCCCCGCGGGTTAT
CGGATTACGGTGGACAAATTGGGCGTCGTCCTCGTGGCGGCCGACGAGGC
GGGGCTGGCCTATGGGGTTCATGCTCTCGCGGGACTGGTGGCGGAG
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