mRNA_M-pyrifera_M_contig126417.5323.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126417.5323.1
Unique NamemRNA_M-pyrifera_M_contig126417.5323.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126417.5323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126417contigM-pyrifera_M_contig126417:76..358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.5819674-CDS-M-pyrifera_M_contig126417:75..1641622815778.5819674-CDS-M-pyrifera_M_contig126417:75..164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126417 76..164 +
1692277565.1773589-CDS-M-pyrifera_M_contig126417:75..1641692277565.1773589-CDS-M-pyrifera_M_contig126417:75..164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126417 76..164 +
1622815778.5923703-CDS-M-pyrifera_M_contig126417:210..3581622815778.5923703-CDS-M-pyrifera_M_contig126417:210..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126417 211..358 +
1692277565.1859908-CDS-M-pyrifera_M_contig126417:210..3581692277565.1859908-CDS-M-pyrifera_M_contig126417:210..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126417 211..358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126417.5323.1prot_M-pyrifera_M_contig126417.5323.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126417 76..358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126417.5323.1

>prot_M-pyrifera_M_contig126417.5323.1 ID=prot_M-pyrifera_M_contig126417.5323.1|Name=mRNA_M-pyrifera_M_contig126417.5323.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
FNCPPGRYGYDCAPTPVGAFSPGDGALHLCYNAPTEGATYTETGVTTSDC
PFQCTVEGEYRAGDTCSSVPIGMFPQDDG
back to top

mRNA from alignment at M-pyrifera_M_contig126417:76..358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126417.5323.1 ID=mRNA_M-pyrifera_M_contig126417.5323.1|Name=mRNA_M-pyrifera_M_contig126417.5323.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=283bp|location=Sequence derived from alignment at M-pyrifera_M_contig126417:76..358+ (Macrocystis pyrifera P11B4 male)
TTTAATTGCCCGCCTGGACGATACGGCTATGATTGTGCACCCACACCGGT
TGGTGCCTTTTCTCCAGGAGATGGGGCCCTGCATCTTTGGTGAGTCGTTT
TATGTGGCGGCTGTGAATTTTTCTGACAGGCACAGCTACAATGCCCCAAC
TGAAGGAGCGACATACACGGAAACAGGCGTGACAACCAGCGATTGTCCCT
TTCAATGCACAGTGGAGGGAGAGTATCGCGCAGGCGACACATGCTCCTCT
GTTCCCATTGGAATGTTCCCTCAAGATGACGGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig126417:76..358+

>mRNA_M-pyrifera_M_contig126417.5323.1 ID=mRNA_M-pyrifera_M_contig126417.5323.1|Name=mRNA_M-pyrifera_M_contig126417.5323.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig126417:76..358+ (Macrocystis pyrifera P11B4 male)
TTTAATTGCCCGCCTGGACGATACGGCTATGATTGTGCACCCACACCGGT
TGGTGCCTTTTCTCCAGGAGATGGGGCCCTGCATCTTTGTTTAATTGCCC
GCCTGGACGATACGGCTATGATTGTGCACCCACACCGGTTGGTGCCTTTT
CTCCAGGAGATGGGGCCCTGCATCTTTGCTACAATGCCCCAACTGAAGGA
GCGACATACACGGAAACAGGCGTGACAACCAGCGATTGTCCCTTTCAATG
CACAGTGGAGGGAGAGTATCGCGCAGGCGACACATGCTCCTCTGTTCCCA
TTGGAATGTTCCCTCAAGATGACGGACTACAATGCCCCAACTGAAGGAGC
GACATACACGGAAACAGGCGTGACAACCAGCGATTGTCCCTTTCAATGCA
CAGTGGAGGGAGAGTATCGCGCAGGCGACACATGCTCCTCTGTTCCCATT
GGAATGTTCCCTCAAGATGACGGA
back to top