mRNA_M-pyrifera_M_contig126389.5318.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126389.5318.1
Unique NamemRNA_M-pyrifera_M_contig126389.5318.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: A0A6I9RVK4_ELAGV (uncharacterized alpha-1,2-galactosyltransferase C1289.13c isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RVK4_ELAGV)

HSP 1 Score: 78.2 bits (191), Expect = 4.750e-15
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   76 LAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEALQ---LKPDADLILTNDWNGLNNGVFLIR 300
            L  P R P W+K+  ++S+L  YDWL W D D  V N D++LESI++ A+    L+   DL++T D+NG+N+GVF  R
Sbjct:  117 LVDPNRPPNWSKILAVRSHLRHYDWLFWNDADTVVTNPDISLESILNVAIGYSGLQASPDLVVTEDFNGVNSGVFFFR 194          
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: A0A7I8KZT5_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KZT5_SPIIN)

HSP 1 Score: 77.4 bits (189), Expect = 8.730e-15
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   16 DNKLQYSAVQRYPFYYYHSHLAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEAL---QLKPDADLILTNDWNGLNNGVFLIR 300
             NK++YSA + Y F+     +    R P+W+K+  +Q +L DYDW+ W D D+ V N  +TL+S++   +   +     DLILT D+NG N G+F +R
Sbjct:   98 SNKMKYSAARGYDFHD-AGDIVDRRRPPSWSKILAIQRHLPDYDWVFWNDADSLVTNFSITLDSVLWTVIGDAEFDDLPDLILTEDFNGFNAGMFFVR 194          
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: UPI00098E0438 (probable alpha-1,6-mannosyltransferase MNN10 isoform X2 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E0438)

HSP 1 Score: 74.7 bits (182), Expect = 1.370e-14
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   19 NKLQYSAVQRYPFYYYHSHLAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEA---LQLKPDADLILTNDWNGLNNGVFLIR 300
            NK  Y+    Y F    S L    R P W+K+  ++ YL  YDW+ W D D  V N +++LESI+  A   L L    DL++T D NG+N+GVF IR
Sbjct:    7 NKRSYAERMGYDFLDARS-LVDRSRPPNWSKILAVRHYLDRYDWVFWNDADTLVTNSNISLESILKAAIGHLDLHASHDLVVTEDTNGINSGVFFIR 102          
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: A0A8B8J690_PHODC (probable alpha-1,6-mannosyltransferase MNN10 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B8J690_PHODC)

HSP 1 Score: 76.6 bits (187), Expect = 2.160e-14
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   16 DNKLQYSAVQRYPFYYYHSHLAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEAL---QLKPDADLILTNDWNGLNNGVFLIR 300
            +NK  Y+    Y F      L  P R P+W+K+  ++S L +YDW+ W D D  + N D++LE+I++ A+    L+   DL++T D+NG+N GVF  R
Sbjct:  126 ENKRAYAGRMGYDFIDAGG-LVDPSRPPSWSKIPAVRSQLPNYDWVFWNDADTVITNPDISLENILNAAIGHSDLRASPDLVVTEDFNGVNAGVFFFR 222          
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: A0A5P1E309_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E309_ASPOF)

HSP 1 Score: 74.7 bits (182), Expect = 2.750e-14
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   19 NKLQYSAVQRYPFYYYHSHLAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEA---LQLKPDADLILTNDWNGLNNGVFLIR 300
            NK  Y+    Y F    S L    R P W+K+  ++ YL  YDW+ W D D  V N +++LESI+  A   L L    DL++T D NG+N+GVF IR
Sbjct:    7 NKRSYAERMGYDFLDARS-LVDRSRPPNWSKILAVRHYLDRYDWVFWNDADTLVTNSNISLESILKAAIGHLDLHASHDLVVTEDTNGINSGVFFIR 102          
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: A0A7S2WUX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUX7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.640e-14
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   10 SIDNKLQYSAVQRYPFYYYHSHLAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEALQLKPDADLILTNDWNGLNNGVFLIRN 303
            S++NK QY+    Y             R   W+K + ++ +L  YD+LL+ D D  VMN +V LES++ +       AD+I+T DWNG+N GVF++RN
Sbjct:   95 SLENKRQYAQRHGYDLVVARGKDIDRSRPAAWSKFKAMRKHLPRYDYLLYTDADTIVMNQEVKLESLVGDG-----SADVIITEDWNGVNTGVFMLRN 187          
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: A0A8K0N533_COCNU (Galactomannan galactosyltransferase 1 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0N533_COCNU)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-13
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   76 LAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEAL---QLKPDADLILTNDWNGLNNGVFLIR 300
            L  P R P+W+K+  +QS L  YDW+ W D D  + N D++LE+I++ A+         DL++T D+NG+N GVF  R
Sbjct:   11 LVDPSRPPSWSKILAVQSQLPYYDWVFWNDADTIITNPDISLENILNAAIGHSDFWASPDLVVTEDFNGVNAGVFFFR 88          
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: A0A6I9R774_ELAGV (probable alpha-1,6-mannosyltransferase MNN10 n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9R774_ELAGV)

HSP 1 Score: 73.6 bits (179), Expect = 2.490e-13
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   19 NKLQYSAVQRYPFYYYHSHLAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEAL---QLKPDADLILTNDWNGLNNGVFLIR 300
            NK  Y+    Y F+     L  P R P+W+K+  ++S L  YDW+ W D D  + N D++LE+I++ A+     +   DL++T D+NG+N GVF  R
Sbjct:  104 NKRAYAERMGYDFFDARR-LVDPSRPPSWSKILAVRSLLPYYDWVFWNDADTIITNPDISLENILNAAIGHSDFQASPDLVVTEDFNGVNAGVFFFR 199          
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: A0A8J5G802_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5G802_ZINOF)

HSP 1 Score: 73.2 bits (178), Expect = 3.820e-13
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   76 LAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEAL---QLKPDADLILTNDWNGLNNGVFLIR 300
            L  P R P+W+K+  +QS L  YDW+ W D D  VMN  ++LESI+  A+         DL++T D NG+N GVF +R
Sbjct:  132 LVDPGRPPSWSKILAVQSLLPRYDWVFWNDADTMVMNPSISLESILHAAIGHMDFDKAPDLVVTEDTNGVNAGVFFVR 209          
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Match: D7G222_ECTSI (Glycosyltransferase, family GT34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G222_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.710e-13
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   10 SIDNKLQYSAVQRYPFYYYHSHLAAPERSPTWAKVQVLQSYLSDYDWLLWIDIDAFVMNMDVTLESIIDEALQLKP-----------DADLILTNDWNGLNNGVFLIRN 303
            SI NK  Y+A+  Y      S      R   W+K+ VL  +L  YD+++++DIDAFVMN    LE ++D A + +            ++DLI+T DWNG N+GV LI+N
Sbjct:  187 SIANKKAYAALHGYDVIVATSADIDRSRPAAWSKLLVLSKHLGSYDYVIFVDIDAFVMNPAFKLEWLLDVARKQQQTGGIDGWGAGKESDLIVTQDWNGPNSGVILIKN 295          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126389.5318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I9RVK4_ELAGV4.750e-1544.87uncharacterized alpha-1,2-galactosyltransferase C1... [more]
A0A7I8KZT5_SPIIN8.730e-1537.76Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
UPI00098E04381.370e-1441.24probable alpha-1,6-mannosyltransferase MNN10 isofo... [more]
A0A8B8J690_PHODC2.160e-1437.76probable alpha-1,6-mannosyltransferase MNN10 n=1 T... [more]
A0A5P1E309_ASPOF2.750e-1441.24Uncharacterized protein n=1 Tax=Asparagus officina... [more]
A0A7S2WUX7_9STRA4.640e-1437.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K0N533_COCNU1.280e-1341.03Galactomannan galactosyltransferase 1 n=1 Tax=Coco... [more]
A0A6I9R774_ELAGV2.490e-1337.11probable alpha-1,6-mannosyltransferase MNN10 n=1 T... [more]
A0A8J5G802_ZINOF3.820e-1343.59Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
D7G222_ECTSI5.710e-1338.53Glycosyltransferase, family GT34 n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126389contigM-pyrifera_M_contig126389:200..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.9
Seed ortholog evalue3.9e-13
Seed eggNOG ortholog42345.XP_008794285.1
KEGG koko:K05531
KEGG Pathwayko00513,ko01100,map00513,map01100
KEGG ModuleM00074
Hectar predicted targeting categoryother localisation
EggNOG free text desc.galactosyl transferase GMA12/MNN10 family
EggNOG OGs37J79@33090,3GH55@35493,3KU2C@4447,KOG4748@1,KOG4748@2759
COG Functional cat.S
CAZyGT34
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815778.375387-CDS-M-pyrifera_M_contig126389:199..5051622815778.375387-CDS-M-pyrifera_M_contig126389:199..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126389 200..505 +
1692277565.092426-CDS-M-pyrifera_M_contig126389:199..5051692277565.092426-CDS-M-pyrifera_M_contig126389:199..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126389 200..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126389.5318.1prot_M-pyrifera_M_contig126389.5318.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126389 200..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126389.5318.1

>prot_M-pyrifera_M_contig126389.5318.1 ID=prot_M-pyrifera_M_contig126389.5318.1|Name=mRNA_M-pyrifera_M_contig126389.5318.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
ARVSIDNKLQYSAVQRYPFYYYHSHLAAPERSPTWAKVQVLQSYLSDYDW
LLWIDIDAFVMNMDVTLESIIDEALQLKPDADLILTNDWNGLNNGVFLIR
NC
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mRNA from alignment at M-pyrifera_M_contig126389:200..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126389.5318.1 ID=mRNA_M-pyrifera_M_contig126389.5318.1|Name=mRNA_M-pyrifera_M_contig126389.5318.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig126389:200..505+ (Macrocystis pyrifera P11B4 male)
GCGCGAGTGAGCATCGACAACAAGCTGCAGTACAGCGCCGTGCAGCGCTA CCCCTTCTACTACTACCACAGCCACCTCGCCGCGCCCGAGCGCTCGCCAA CGTGGGCGAAGGTGCAGGTGCTGCAGAGCTACCTTTCCGACTACGATTGG CTGCTCTGGATAGATATTGACGCCTTTGTCATGAACATGGACGTAACCCT CGAGTCGATCATCGACGAGGCACTGCAGCTGAAGCCCGACGCTGACCTCA TCCTCACCAATGACTGGAATGGCCTCAACAACGGCGTATTCCTCATCCGC AATTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126389:200..505+

>mRNA_M-pyrifera_M_contig126389.5318.1 ID=mRNA_M-pyrifera_M_contig126389.5318.1|Name=mRNA_M-pyrifera_M_contig126389.5318.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig126389:200..505+ (Macrocystis pyrifera P11B4 male)
GCGCGAGTGAGCATCGACAACAAGCTGCAGTACAGCGCCGTGCAGCGCTA
CCCCTTCTACTACTACCACAGCCACCTCGCCGCGCCCGAGCGCTCGCCAA
CGTGGGCGAAGGTGCAGGTGCTGCAGAGCTACCTTTCCGACTACGATTGG
CTGCTCTGGATAGATATTGACGCCTTTGTCATGAACATGGACGTAACCCT
CGAGTCGATCATCGACGAGGCACTGCAGCTGAAGCCCGACGCTGACCTCA
TCCTCACCAATGACTGGAATGGCCTCAACAACGGCGTATTCCTCATCCGC
AATTGCGCGCGAGTGAGCATCGACAACAAGCTGCAGTACAGCGCCGTGCA
GCGCTACCCCTTCTACTACTACCACAGCCACCTCGCCGCGCCCGAGCGCT
CGCCAACGTGGGCGAAGGTGCAGGTGCTGCAGAGCTACCTTTCCGACTAC
GATTGGCTGCTCTGGATAGATATTGACGCCTTTGTCATGAACATGGACGT
AACCCTCGAGTCGATCATCGACGAGGCACTGCAGCTGAAGCCCGACGCTG
ACCTCATCCTCACCAATGACTGGAATGGCCTCAACAACGGCGTATTCCTC
ATCCGCAATTGC
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