mRNA_M-pyrifera_M_contig12633.5311.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12633.5311.1
Unique NamemRNA_M-pyrifera_M_contig12633.5311.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: D7FNL5_ECTSI (Short-chain alcohol dehydrogenase-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL5_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 9.670e-110
Identity = 169/199 (84.92%), Postives = 178/199 (89.45%), Query Frame = 1
Query:    1 RRKTTPDASALFDNNPNIQVVDGVDVAKDEGAGRLVQALENTGNPKVDVLINNAGIMSRSRNALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTGDSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW 597
            RRK TPDAS+LFDNNPNI VVDGVDV  DEGAG LV ALE  G+PKVDVLINNAG+M R RN LDI VLRESMEVNAYGA+RIT+ LL KR+LA+PGAKI+LITSKMGSMADNSSGGAY YRMSKAALNAAGVSLAHDLK DGMAVAILHPGWVRT MTGDSGLVD +ESVAGMT RIEEL L NSGTFWGFKGDVIPW
Sbjct:   40 RRKATPDASSLFDNNPNIHVVDGVDVTMDEGAGCLVSALEKAGSPKVDVLINNAGVMKRDRNTLDIGVLRESMEVNAYGALRITNTLLGKRMLAAPGAKIILITSKMGSMADNSSGGAYGYRMSKAALNAAGVSLAHDLKGDGMAVAILHPGWVRTRMTGDSGLVDTHESVAGMTDRIEELDLSNSGTFWGFKGDVIPW 238          
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: A0A7Z9G4R6_9DELT (SDR family oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Z9G4R6_9DELT)

HSP 1 Score: 197 bits (501), Expect = 7.480e-58
Identity = 113/199 (56.78%), Postives = 144/199 (72.36%), Query Frame = 1
Query:    4 RKTTPDASALFDNNPNIQVVDGVDVAKDEGAGRLVQALENTGNPKVDVLINNAGIMSR-SRNALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTGDSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW 597
            RK++PD  +L      ++ V GVDV+ DE    L   L   G+ ++D+LINNAGI+ R S   LD+D + E  +VN+ G +R+T A LR R+  S GAK+ +I+S+MGS+ADNSSG  Y YRMSKAA+N AGVSLA DLK  G+AVAILHPGWVRT MTG++GLVDA ES AG+ ARIEELTL NSGTFW   G+++PW
Sbjct:   33 RKSSPDLDSL-----KLRTVCGVDVSSDEAVQMLDAEL---GDTQLDLLINNAGILRRESLEELDMDSMLEQFKVNSLGPLRVT-ATLRHRM--SAGAKVAIISSRMGSIADNSSGSRYGYRMSKAAVNIAGVSLARDLKPQGIAVAILHPGWVRTDMTGNTGLVDAKESAAGLIARIEELTLENSGTFWHMNGEILPW 220          
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: A0A7S2V6A8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6A8_9STRA)

HSP 1 Score: 183 bits (464), Expect = 8.160e-52
Identity = 105/190 (55.26%), Postives = 134/190 (70.53%), Query Frame = 1
Query:   40 NNPNIQVVDGVDVAKDEGAGRLVQALENTGNPKVDVLINNAGIMSRSRNALDIDVLRESM---EVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTGDSGLVDAYESVAGMTARIE-ELTLGNSGTFWGFKGDVIPW 597
            N PN ++++G+DV  D    +L   LE + + KVD+LINNAG  +R  ++LD  V  +++   EVNA G +R+T  L  +RLL SPG K+ LITS+MGSM DN+SGG YAYRMSKAALNAAGVSLA DLK  G++VAILHPGWVRTAMT   GL+   ESV+GM   +E EL L  SGT+W   G+V+ W
Sbjct:   73 NLPNTEIIEGIDVTCDASVKKLADFLEQS-DLKVDILINNAGSAARG-DSLDEIVYNDAVKAFEVNAVGPLRVTKQLYDRRLLTSPGCKVGLITSRMGSMKDNTSGGRYAYRMSKAALNAAGVSLAFDLKPLGVSVAILHPGWVRTAMTNFDGLISPKESVSGMVKILEDELDLNTSGTWWHTNGEVLQW 260          
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: A0A523MPW3_9GAMM (SDR family oxidoreductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523MPW3_9GAMM)

HSP 1 Score: 178 bits (452), Expect = 1.500e-50
Identity = 101/187 (54.01%), Postives = 131/187 (70.05%), Query Frame = 1
Query:   43 NPNIQVVDGVDVAKDEGAGRLVQALENTGNP-KVDVLINNAGIM-SRSRNALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTGDSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW 597
            +P I +  G D+      G  ++A   T  P  +D+LINNAGI+   S + LDI+ +R+  EVNA G +R+T +LL        GAKIVL+TS+MGS+ADN SGG+Y YRMSKAALNAAG+SLA DL+  G+AVAILHPG+VRT MTG SGL+D  ESVAG+  RI+ L L NSG+FW   G+++PW
Sbjct:   41 SPGIDIHAGYDITD----GVAIEAFARTVEPGTIDLLINNAGILHGMSLDDLDIESVRQQFEVNALGPLRVTRSLLHA---LKDGAKIVLLTSRMGSIADNDSGGSYGYRMSKAALNAAGMSLARDLRGRGIAVAILHPGYVRTDMTGQSGLLDVDESVAGLLERIDGLNLANSGSFWHSNGELLPW 220          
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: UPI001688FB54 (SDR family oxidoreductase n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI001688FB54)

HSP 1 Score: 178 bits (451), Expect = 2.170e-50
Identity = 104/184 (56.52%), Postives = 130/184 (70.65%), Query Frame = 1
Query:   52 IQVVDGVDVAKDEGAGRLVQALENTGNPKVDVLINNAGIMSR-SRNALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTG-DSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW 597
            +QV  GVD+  D     L   L   GN  +DVLINNAGI+ R +   LD D +R+  EVNA GA+R+T  LL  RL A  G+K+VLITS+MGS+ADN+SGG+Y YRMSK AL+ AG SLAHDLK+ G+AVA+LHPG V+T MT   SG + A  SV G+ ARI++LTL NSGTFW   G+V+PW
Sbjct:   44 VQVETGVDITDDASVASLSDRL---GNQSIDVLINNAGILQRVTLEDLDFDSIRQQFEVNALGALRVTHTLL-PRLKA--GSKVVLITSRMGSIADNTSGGSYGYRMSKVALSMAGKSLAHDLKSRGIAVAVLHPGLVQTRMTNFTSGGISAETSVKGLLARIDQLTLDNSGTFWHSNGEVLPW 221          
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: A0A1H1PEU6_9GAMM (Short-chain dehydrogenase n=1 Tax=Halopseudomonas xinjiangensis TaxID=487184 RepID=A0A1H1PEU6_9GAMM)

HSP 1 Score: 177 bits (450), Expect = 2.970e-50
Identity = 97/182 (53.30%), Postives = 129/182 (70.88%), Query Frame = 1
Query:   55 QVVDGVDVAKDEGAGRLVQALENTGNPKVDVLINNAGIMSRSR-NALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTGDSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW 597
            +V+ G+DV + E   +LV+AL   G+ ++DVLINNAG++   R  ++D D +R+ MEVNAY  +R+T ALL    L   GAKI  ITS+MGSMADN SGG Y YR SKAALNA G SLA DLK  G+AVA+LHPG+V+T MTG++G +   ES  G+ ARI+ L+L N+G+FW   G+ +PW
Sbjct:   45 RVISGIDVTRQESVAKLVEAL---GSQQIDVLINNAGLLHDERLGSIDFDSIRQQMEVNAYAPLRVTEALLP---LLGQGAKIANITSRMGSMADNDSGGRYGYRASKAALNAFGKSLAMDLKPRGIAVALLHPGYVKTRMTGNTGQLTPEESARGLVARIDALSLENTGSFWHSNGESLPW 220          
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: UPI001CBCA980 (SDR family oxidoreductase n=1 Tax=Pseudomonas nanhaiensis TaxID=2830842 RepID=UPI001CBCA980)

HSP 1 Score: 177 bits (450), Expect = 2.970e-50
Identity = 97/182 (53.30%), Postives = 128/182 (70.33%), Query Frame = 1
Query:   55 QVVDGVDVAKDEGAGRLVQALENTGNPKVDVLINNAGIMSRSR-NALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTGDSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW 597
            +V+  VDV +DE   +LV+AL+      +D+LINNAG++   R   +D D +R+ MEVNAY  +R+T ALL    L   GAK+  ITS+MGSMADN SGG Y YR SKAALNA G SLA DLK  G+AVA+LHPG+V+T MTG++G +   ES AG+ ARI+ LTL N+G+FW   G+++PW
Sbjct:   45 RVISSVDVTRDEDVRKLVEALDGE---SIDLLINNAGLLRDERLGTIDFDSIRQQMEVNAYAPLRVTEALLP---LLGQGAKVANITSRMGSMADNDSGGRYGYRASKAALNAFGKSLAMDLKGRGIAVALLHPGYVQTRMTGNTGQMTPEESAAGIAARIDALTLDNTGSFWHSNGELLPW 220          
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: A0A2E9QWS4_9DELT (Short-chain dehydrogenase n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A2E9QWS4_9DELT)

HSP 1 Score: 177 bits (449), Expect = 4.180e-50
Identity = 97/183 (53.01%), Postives = 126/183 (68.85%), Query Frame = 1
Query:   52 IQVVDGVDVAKDEGAGRLVQALENTGNPKVDVLINNAGIMSRSR-NALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTGDSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW 597
            ++VV GVDV+          +L   G+ K+D+LINNAGI+ R     +D D + +  EVN+ G +R+T  LL      S GAK+ L+TS+MGS+ADN+SG  Y YRMSKAALN AGVSLAHDLK   ++VAILHPG+VRT MTG  G++DA +S AG+  RI+EL L NSGTFW   G+V+PW
Sbjct:   44 VRVVTGVDVSDQASLDTFAASL---GDEKIDILINNAGILKRETLEEMDYDTIFKQFEVNSVGPLRVTHTLLPH---LSEGAKVALVTSRMGSIADNTSGSRYGYRMSKAALNMAGVSLAHDLKDRSISVAILHPGFVRTDMTGRQGMIDADQSAAGLIQRIDELNLDNSGTFWHTNGEVLPW 220          
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: A0A2S9YLA9_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YLA9_9DELT)

HSP 1 Score: 176 bits (447), Expect = 8.290e-50
Identity = 99/183 (54.10%), Postives = 128/183 (69.95%), Query Frame = 1
Query:   52 IQVVDGVDVAKDEGAGRLVQALENTGNPKVDVLINNAGIMSRSR-NALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTGDSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW 597
            ++V  G+DV   E    L + L   G+  +DVLINNAGI+  S  +ALD D +R   EVNA G +R+ S+L R RL    G+KI ++TS+MGS+ADNSSGG+Y YRMSKAA+N AGVSLAHDL+ +G+AVA+LHPGWV+T MTG +G + A ES  G+ ARI+ LTL  SG FW   G  +PW
Sbjct:   44 VRVEAGIDVTDGESLAELDRRL---GDLSIDVLINNAGILQPSTLDALDFDAIRRQFEVNAMGPLRVVSSL-RARL--GSGSKIAIVTSRMGSLADNSSGGSYGYRMSKAAVNMAGVSLAHDLRPEGVAVALLHPGWVQTEMTGGTGHITAQESARGLIARIDALTLETSGGFWHQDGSRLPW 220          
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Match: A0A2G6CLS8_9PROT (Short-chain dehydrogenase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2G6CLS8_9PROT)

HSP 1 Score: 176 bits (446), Expect = 1.170e-49
Identity = 98/183 (53.55%), Postives = 127/183 (69.40%), Query Frame = 1
Query:   52 IQVVDGVDVAKDEGAGRLVQALENTGNPKVDVLINNAGIMSR-SRNALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSKMGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRTAMTGDSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW 597
            ++V  GVDV+  EG   L + L   G  ++D+LINNAGI+ R S + +  + + E  EVN+ G +R+T ALL        G+K+ L+TS+MGS+ADN+SG  Y YRMSKAALN AGVSLAHDL+  G+AVAILHPG+VRT MT   GL+DA ES  G+ AR+E LTL  SGTFW   GD++PW
Sbjct:   44 VRVEAGVDVSAAEGVASLAERL---GATRIDLLINNAGILRRESLDEMSFESMVEQFEVNSLGPLRVTHALLTN---LGEGSKVGLVTSRMGSIADNTSGSRYGYRMSKAALNIAGVSLAHDLRHRGIAVAILHPGFVRTEMTNQQGLIDADESARGLLARLEALTLETSGTFWHQNGDILPW 220          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12633.5311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNL5_ECTSI9.670e-11084.92Short-chain alcohol dehydrogenase-like protein n=2... [more]
A0A7Z9G4R6_9DELT7.480e-5856.78SDR family oxidoreductase n=1 Tax=Myxococcales bac... [more]
A0A7S2V6A8_9STRA8.160e-5255.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A523MPW3_9GAMM1.500e-5054.01SDR family oxidoreductase n=1 Tax=Gammaproteobacte... [more]
UPI001688FB542.170e-5056.52SDR family oxidoreductase n=1 Tax=Microcoleus sp. ... [more]
A0A1H1PEU6_9GAMM2.970e-5053.30Short-chain dehydrogenase n=1 Tax=Halopseudomonas ... [more]
UPI001CBCA9802.970e-5053.30SDR family oxidoreductase n=1 Tax=Pseudomonas nanh... [more]
A0A2E9QWS4_9DELT4.180e-5053.01Short-chain dehydrogenase n=2 Tax=Deltaproteobacte... [more]
A0A2S9YLA9_9DELT8.290e-5054.10Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
A0A2G6CLS8_9PROT1.170e-4953.55Short-chain dehydrogenase n=1 Tax=Proteobacteria b... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12633contigM-pyrifera_M_contig12633:538..2436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.2
Seed ortholog evalue3.7e-62
Seed eggNOG ortholog2880.D7FNL5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular detoxification of aldehyde
EggNOG OGsCOG1028@1,KOG1611@2759
Ec32 ortholog descriptionshort-chain alcohol dehydrogenase-like protein
Ec32 orthologEc-01_005030.1
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1191
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12633.5311.1prot_M-pyrifera_M_contig12633.5311.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12633 706..1845 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.8632715-UTR-M-pyrifera_M_contig12633:537..7051622815777.8632715-UTR-M-pyrifera_M_contig12633:537..705Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12633 538..705 +
1692277564.7937229-UTR-M-pyrifera_M_contig12633:537..7051692277564.7937229-UTR-M-pyrifera_M_contig12633:537..705Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12633 538..705 +
1622815777.8943486-UTR-M-pyrifera_M_contig12633:1845..24361622815777.8943486-UTR-M-pyrifera_M_contig12633:1845..2436Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12633 1846..2436 +
1692277564.826243-UTR-M-pyrifera_M_contig12633:1845..24361692277564.826243-UTR-M-pyrifera_M_contig12633:1845..2436Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12633 1846..2436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.8751783-CDS-M-pyrifera_M_contig12633:705..9911622815777.8751783-CDS-M-pyrifera_M_contig12633:705..991Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12633 706..991 +
1692277564.8062756-CDS-M-pyrifera_M_contig12633:705..9911692277564.8062756-CDS-M-pyrifera_M_contig12633:705..991Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12633 706..991 +
1622815777.8849082-CDS-M-pyrifera_M_contig12633:1699..18451622815777.8849082-CDS-M-pyrifera_M_contig12633:1699..1845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12633 1700..1845 +
1692277564.8159192-CDS-M-pyrifera_M_contig12633:1699..18451692277564.8159192-CDS-M-pyrifera_M_contig12633:1699..1845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12633 1700..1845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12633.5311.1

>prot_M-pyrifera_M_contig12633.5311.1 ID=prot_M-pyrifera_M_contig12633.5311.1|Name=mRNA_M-pyrifera_M_contig12633.5311.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MSRSRNALDIDVLRESMEVNAYGAVRITSALLRKRLLASPGAKIVLITSK
MGSMADNSSGGAYAYRMSKAALNAAGVSLAHDLKADGMAVAILHPGWVRT
AMTGDSGLVDAYESVAGMTARIEELTLGNSGTFWGFKGDVIPW*
back to top

mRNA from alignment at M-pyrifera_M_contig12633:538..2436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12633.5311.1 ID=mRNA_M-pyrifera_M_contig12633.5311.1|Name=mRNA_M-pyrifera_M_contig12633.5311.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at M-pyrifera_M_contig12633:538..2436+ (Macrocystis pyrifera P11B4 male)
AGGCGAAAAACGACTCCAGACGCGAGCGCGTTGTTCGACAATAACCCGAA CATCCAAGTAGTGGACGGCGTTGATGTCGCCAAAGACGAAGGAGCGGGGC GTCTGGTCCAGGCCCTCGAAAACACTGGTAACCCTAAGGTCGACGTGCTC ATCAACAATGCCGGGATCATGTCGCGCTCTCGGAATGCGCTCGACATCGA CGTCCTGCGCGAGTCGATGGAGGTCAACGCCTACGGTGCTGTGAGAATTA CTAGCGCGCTGCTCAGGAAGAGGCTTCTCGCGTCACCCGGCGCAAAGATA GTGCTCATCACGTCGAAGATGGGCTCGATGGCGGACAATTCGTCTGGCGG CGCGTATGCCTACCGCATGTCCAAGGCGGCTCTGAATGCGGCGGGGGTGT CGCTGGCACACGATCTCAAGGCCGATGGCATGGCCGTGGCCATTCTTCAC CCAGGTGAGAGTGGGCCTAACCCACCAACGAAAGGGTCAACGGTAAACGA TTTCTCTCAATAATTTTCTGGTGTAAATTGCGCGCACGGTTCGAGCGACC CGAGATGGCGGAGTGCAAGACGCCTCTGTTTTCGCCGCAGAGAGACCTCA GCAATCTGGCAAATTGAGTGGCACAATCACCTGGGCTTTATTCCCTTCGC CCGGAAACGTTGAACCCCGCAATGTAAAGTAACAGACTTGCATGATTCAT CCAACGCGTCTGCTGTCAGCCAGTCGTGCCAAAACTCCTGGTCATGTCTA CAGTACGGCAGGCGATCCAACTGCAGAAGCTTATATTGCTCATGCCGCCC TCGGTAAGCGGTGGTGACGGAGTTATCTTGCTTGTCTTCGTCTATACCTG AAAACCCGTTCCCCGCCACCAGCCGCCGGGGACTGCATTCATGGCCAAAT ACGTTTTCGCGATGCGGCAATATTGGGCGGGTATACGCAACCATTGTGAC TTTATACTTGCATTGAAACAAATAGTAGTAGAGAGTCTCAGCTGAGGATC AAATCGAATGATAAAATACGTTTGCGATGCGGCGATCTTGGGCGGATGTA CGCAGCCATAGTGAGTTTTTACTTGTCGGAAAGCCTCACTATTGGATCAG ATCGAAACATGAACCACCCTTTGTGTCGGCGTCCCGCTTGTGGCTCGGTC GCCCCCGTGCAGGCTGGGTGAGGACAGCGATGACCGGCGATTCTGGCTTG GTCGACGCGTACGAGTCGGTCGCGGGAATGACTGCAAGAATCGAGGAGTT GACCCTTGGAAACTCAGGAACGTTCTGGGGGTTCAAGGGTGACGTCATCC CTTGGTGAATGAACCAGGCACCTTCAAAGCGTTCTTGCATAGGCTGGCGG TCTTGCTAATAGCGGAAGCATAACGTAGGACCGATTGCGCCCGCTATATT TTAGATCGGTGCGCGTGTTGCGGTAGGAGTACGGTAAGCCTGCATTTTTT TCGTTGCCTCTTCCGACAATTTCGCAGACCAGTAAAAAGTGGCACGCCGC AGGGCCCCTACCAAACGTCCCTGAAATCGCAGAACGTTGCTTCGTTGCTT CCACCCTTGCGCGTGGTGACACATTCGGTCCGCCCGTCGTTGGCGACGGA CACTTTTACTTGGGGCTGCGCCACAACGACCTTGTTTTTCCTGTGGGATA TTCCTTTTTTTGCGAGGAGAGACATTTTTTGCTTGGGGCTGCACCACAAC CACGACTTTTTTTGTGGGATATTCCAATTGGGGGGGCGGAGTTAACTGGC TGTAGACATTGTTTTGGCTCGAATATATCCCTGGTGTGTTTTGGAGGTGG TGCGCTGTTCATGGTGTCTCTGGTCAACCCAAACCTGGGCTCCAGCGTAT CACTGCGCTCGAAGATGATCCATGGCTAGTTGAGCAACATTGAATGAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12633:538..2436+

>mRNA_M-pyrifera_M_contig12633.5311.1 ID=mRNA_M-pyrifera_M_contig12633.5311.1|Name=mRNA_M-pyrifera_M_contig12633.5311.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig12633:538..2436+ (Macrocystis pyrifera P11B4 male)
ATGTCGCGCTCTCGGAATGCGCTCGACATCGACGTCCTGCGCGAGTCGAT
GGAGGTCAACGCCTACGGTGCTGTGAGAATTACTAGCGCGCTGCTCAGGA
AGAGGCTTCTCGCGTCACCCGGCGCAAAGATAGTGCTCATCACGTCGAAG
ATGGGCTCGATGGCGGACAATTCGTCTGGCGGCGCGTATGCCTACCGCAT
GTCCAAGGCGGCTCTGAATGCGGCGGGGGTGTCGCTGGCACACGATCTCA
AGGCCGATGGCATGGCCGTGGCCATTCTTCACCCAGATGTCGCGCTCTCG
GAATGCGCTCGACATCGACGTCCTGCGCGAGTCGATGGAGGTCAACGCCT
ACGGTGCTGTGAGAATTACTAGCGCGCTGCTCAGGAAGAGGCTTCTCGCG
TCACCCGGCGCAAAGATAGTGCTCATCACGTCGAAGATGGGCTCGATGGC
GGACAATTCGTCTGGCGGCGCGTATGCCTACCGCATGTCCAAGGCGGCTC
TGAATGCGGCGGGGGTGTCGCTGGCACACGATCTCAAGGCCGATGGCATG
GCCGTGGCCATTCTTCACCCAGGCTGGGTGAGGACAGCGATGACCGGCGA
TTCTGGCTTGGTCGACGCGTACGAGTCGGTCGCGGGAATGACTGCAAGAA
TCGAGGAGTTGACCCTTGGAAACTCAGGAACGTTCTGGGGGTTCAAGGGT
GACGTCATCCCTTGGTGAGCTGGGTGAGGACAGCGATGACCGGCGATTCT
GGCTTGGTCGACGCGTACGAGTCGGTCGCGGGAATGACTGCAAGAATCGA
GGAGTTGACCCTTGGAAACTCAGGAACGTTCTGGGGGTTCAAGGGTGACG
TCATCCCTTGGTGA
back to top