prot_M-pyrifera_M_contig10247.529.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig10247.529.1
Unique Nameprot_M-pyrifera_M_contig10247.529.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length46
Homology
BLAST of mRNA_M-pyrifera_M_contig10247.529.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 8.000e-11
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    5 GQIRGLYKARARGRQLECSLCKELGATVDCRVGKCDEVFHFQ 46
            G I  LYKAR RGR LECSLCKE GATVDC   KC+EV+H++
Sbjct: 2415 GTICELYKARGRGRLLECSLCKEPGATVDCSSHKCEEVYHYE 2456          
BLAST of mRNA_M-pyrifera_M_contig10247.529.1 vs. uniprot
Match: A0A6A4G1I2_9STRA (Chromodomain-helicase-DNA-binding protein 9 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A4G1I2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 7.710e-5
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0
Query:    1 MQALGQIRGLYKARARGRQLECSLCKELGATVDCRVGKCDEVFHFQ 46
            ++A G I  L KA  RGRQL+CS C ++GATV C V KC   +H +
Sbjct: 2184 VKADGLIMNLPKAIKRGRQLKCSTCHKVGATVGCVVAKCRRNYHLR 2229          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10247.529.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHU3_ECTSI8.000e-1169.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A4G1I2_9STRA7.710e-550.00Chromodomain-helicase-DNA-binding protein 9 n=11 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..46
e-value: 3.2E-10
score: 42.1
NoneNo IPR availablePFAMPF13771zf-HC5HC2Hcoord: 6..45
e-value: 4.2E-8
score: 33.3
IPR034732Extended PHD (ePHD) domainPROSITEPS51805EPHDcoord: 1..46
score: 9.495

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10247contigM-pyrifera_M_contig10247:220..357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10247.529.1mRNA_M-pyrifera_M_contig10247.529.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig10247 205..357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig10247.529.1 ID=prot_M-pyrifera_M_contig10247.529.1|Name=mRNA_M-pyrifera_M_contig10247.529.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MQALGQIRGLYKARARGRQLECSLCKELGATVDCRVGKCDEVFHFQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR034732EPHD