mRNA_M-pyrifera_M_contig126262.5295.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126262.5295.1
Unique NamemRNA_M-pyrifera_M_contig126262.5295.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126262.5295.1 vs. uniprot
Match: A0A8D9EXC3_9HEMI (Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9EXC3_9HEMI)

HSP 1 Score: 49.7 bits (117), Expect = 3.750e-5
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:    1 CGKSFKSSDGLRHHKRSKHEGVRYPCSRCPKSFTYQSALRVH 126
            C KSF     L  H RS HEG++YPCS+C KSF  +S LR H
Sbjct:    2 CPKSFSRKGELNKHVRSTHEGIKYPCSKCSKSFLDRSNLRRH 43
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126262.5295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8D9EXC3_9HEMI3.750e-554.76Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsyll... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126262contigM-pyrifera_M_contig126262:5..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.2404034-CDS-M-pyrifera_M_contig126262:4..3221622815777.2404034-CDS-M-pyrifera_M_contig126262:4..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126262 5..322 +
1692277564.5536156-CDS-M-pyrifera_M_contig126262:4..3221692277564.5536156-CDS-M-pyrifera_M_contig126262:4..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126262 5..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126262.5295.1prot_M-pyrifera_M_contig126262.5295.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126262 5..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126262.5295.1

>prot_M-pyrifera_M_contig126262.5295.1 ID=prot_M-pyrifera_M_contig126262.5295.1|Name=mRNA_M-pyrifera_M_contig126262.5295.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
CGKSFKSSDGLRHHKRSKHEGVRYPCSRCPKSFTYQSALRVHEQIHDGVR
HVCEECGKSYSDRSNLISHMKSSHFGVRFPCGECSKTFTTKRYATIHRRK
AHGVG*
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mRNA from alignment at M-pyrifera_M_contig126262:5..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126262.5295.1 ID=mRNA_M-pyrifera_M_contig126262.5295.1|Name=mRNA_M-pyrifera_M_contig126262.5295.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig126262:5..322+ (Macrocystis pyrifera P11B4 male)
TGTGGGAAGTCCTTCAAGTCCTCTGATGGTCTTCGACATCACAAGAGGAG
CAAGCATGAAGGTGTTCGCTATCCTTGCTCTCGATGCCCCAAATCCTTCA
CTTATCAATCTGCTCTTCGTGTTCACGAGCAGATTCATGATGGAGTGAGG
CATGTGTGTGAGGAGTGTGGGAAATCATATTCAGATCGCTCCAATCTCAT
CTCCCACATGAAGTCGTCTCACTTTGGCGTTCGTTTCCCTTGTGGGGAGT
GTTCTAAGACGTTTACTACCAAGCGATATGCCACGATACACCGTCGGAAG
GCACATGGGGTTGGATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126262:5..322+

>mRNA_M-pyrifera_M_contig126262.5295.1 ID=mRNA_M-pyrifera_M_contig126262.5295.1|Name=mRNA_M-pyrifera_M_contig126262.5295.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig126262:5..322+ (Macrocystis pyrifera P11B4 male)
TGTGGGAAGTCCTTCAAGTCCTCTGATGGTCTTCGACATCACAAGAGGAG
CAAGCATGAAGGTGTTCGCTATCCTTGCTCTCGATGCCCCAAATCCTTCA
CTTATCAATCTGCTCTTCGTGTTCACGAGCAGATTCATGATGGAGTGAGG
CATGTGTGTGAGGAGTGTGGGAAATCATATTCAGATCGCTCCAATCTCAT
CTCCCACATGAAGTCGTCTCACTTTGGCGTTCGTTTCCCTTGTGGGGAGT
GTTCTAAGACGTTTACTACCAAGCGATATGCCACGATACACCGTCGGAAG
GCACATGGGGTTGGATAGTGTGGGAAGTCCTTCAAGTCCTCTGATGGTCT
TCGACATCACAAGAGGAGCAAGCATGAAGGTGTTCGCTATCCTTGCTCTC
GATGCCCCAAATCCTTCACTTATCAATCTGCTCTTCGTGTTCACGAGCAG
ATTCATGATGGAGTGAGGCATGTGTGTGAGGAGTGTGGGAAATCATATTC
AGATCGCTCCAATCTCATCTCCCACATGAAGTCGTCTCACTTTGGCGTTC
GTTTCCCTTGTGGGGAGTGTTCTAAGACGTTTACTACCAAGCGATATGCC
ACGATACACCGTCGGAAGGCACATGGGGTTGGATAG
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