mRNA_M-pyrifera_M_contig126260.5294.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126260.5294.1
Unique NamemRNA_M-pyrifera_M_contig126260.5294.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: A0A5A8EDH5_CAFRO (Acyl carrier protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDH5_CAFRO)

HSP 1 Score: 130 bits (326), Expect = 3.620e-37
Identity = 62/86 (72.09%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:    4 LQTFLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            +Q F+ RDEV ERV+ VV  FEKV+++KVT  AH  NDLGLDSLDTVE+CMA+EEEFC+QIPDAEAEKIF+++DA++FVATHPQAK
Sbjct:   41 VQNFIARDEVTERVMAVVTAFEKVEQAKVTPTAHFGNDLGLDSLDTVELCMAIEEEFCIQIPDAEAEKIFSVEDAVNFVATHPQAK 126
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BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: A0A4D8ZHV3_SALSN (Acyl carrier protein n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8ZHV3_SALSN)

HSP 1 Score: 117 bits (292), Expect = 5.880e-32
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:   13 FLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            FLE+ EV +RV+ VVKNF+KVD SKVT  AH  NDLGLDSLDTVE+ MALEEEFC +IPD EA+KI +I  A+DF+A+HPQAK
Sbjct:   47 FLEKSEVADRVINVVKNFQKVDPSKVTPNAHFQNDLGLDSLDTVEIVMALEEEFCFEIPDDEADKINSINLAVDFIASHPQAK 129
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BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: B9N135_POPTR (Acyl carrier protein n=7 Tax=Saliceae TaxID=238069 RepID=B9N135_POPTR)

HSP 1 Score: 114 bits (286), Expect = 5.240e-31
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   10 TFLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            TFL++ EV +RVV VVKNF+KVD SKVT +AH  NDLGLDSLDTVE+ MALEEEF  +IPD EA+KI T+  AIDF+++HPQAK
Sbjct:   49 TFLDKSEVSDRVVNVVKNFQKVDPSKVTPDAHFQNDLGLDSLDTVEIVMALEEEFKFEIPDNEADKISTVSLAIDFISSHPQAK 132
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BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: A0A7S0UHG3_HEMAN (Acyl carrier protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UHG3_HEMAN)

HSP 1 Score: 114 bits (286), Expect = 5.720e-31
Identity = 56/83 (67.47%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:   13 FLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            FL ++EV ERV+ VVKNF+ VD +KVT EAH  NDLGLDSLDTVEV MA E+EF V+IPDAEAEKI T+ +A++++A+HPQAK
Sbjct:   53 FLPKEEVQERVISVVKNFQNVDPAKVTPEAHFTNDLGLDSLDTVEVVMAFEDEFAVEIPDAEAEKISTVGNAVEYIASHPQAK 135
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BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: A0A2U1NGS6_ARTAN (Acyl carrier protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1NGS6_ARTAN)

HSP 1 Score: 114 bits (285), Expect = 6.820e-31
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   10 TFLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            TFL++ EV +RVV  VKNF+KVD SKVT  AH  NDLGLDSLDTVEV MALEEEF  +IPD EA+KI TI  A+DF+A+HPQAK
Sbjct:   46 TFLDKSEVTDRVVTCVKNFQKVDPSKVTPTAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTISHAVDFIASHPQAK 129
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BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: A0A059D2E0_EUCGR (Acyl carrier protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059D2E0_EUCGR)

HSP 1 Score: 114 bits (284), Expect = 9.680e-31
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   10 TFLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            +FL++ EV +RVV VVKNF+KVD SKVT  AH  NDLGLDSLDTVE+ MALEEEF  +IPD EA+KI TI+ A+DF+A+HPQAK
Sbjct:   46 SFLDKSEVTDRVVTVVKNFQKVDPSKVTPNAHFQNDLGLDSLDTVEIVMALEEEFGFEIPDNEADKINTIELAVDFIASHPQAK 129
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BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: A0A2H5PT01_CITUN (Acyl carrier protein n=5 Tax=Citrus TaxID=2706 RepID=A0A2H5PT01_CITUN)

HSP 1 Score: 113 bits (283), Expect = 1.300e-30
Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   10 TFLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            +FL++ EV +RV+ VVKNF+KVD SKVT  AH  NDLGLDSLDTVEV MALEEEF  +IPD EA+KI TI  A+DF+A+HPQAK
Sbjct:   44 SFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHPQAK 127
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BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: A0A6A3B832_HIBSY (Acyl carrier protein n=4 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3B832_HIBSY)

HSP 1 Score: 113 bits (283), Expect = 1.540e-30
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    1 VLQTFLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            V+ +FL++ EV +RVV VVKNF+KVD SKVT +AH   DLGLDSLDTVEV MALEEEF  +IPD EA+KI TI  A++F+A+HPQAK
Sbjct:   47 VMGSFLDKSEVTDRVVSVVKNFQKVDPSKVTPDAHFQKDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINQAVEFIASHPQAK 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: A0A7S0V3E4_9CRYP (Acyl carrier protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V3E4_9CRYP)

HSP 1 Score: 113 bits (282), Expect = 2.380e-30
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   13 FLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            FL +DEV ERV+ VVKNF+ VD +KVT EA   NDLGLDSLDTVEV MA E+EF V+IPDAEAEKI T+  A+D++A+HPQAK
Sbjct:   54 FLPKDEVQERVMSVVKNFQNVDPAKVTPEASFTNDLGLDSLDTVEVVMAFEDEFAVEIPDAEAEKIATVAHAVDYIASHPQAK 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Match: A0A7N0TAU7_KALFE (Acyl carrier protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TAU7_KALFE)

HSP 1 Score: 112 bits (281), Expect = 2.540e-30
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:   10 TFLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEVCMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK 261
            +FL++ EV +RV++VVKNF+KVD SKVT EAH  NDLGLDSLD VE+ MALEEEF  +IPD EA+KI +I+ A+DF+A+HPQAK
Sbjct:   43 SFLDKSEVTDRVIKVVKNFQKVDPSKVTPEAHFQNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSIKLAVDFIASHPQAK 126
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126260.5294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EDH5_CAFRO3.620e-3772.09Acyl carrier protein n=2 Tax=Cafeteria roenbergens... [more]
A0A4D8ZHV3_SALSN5.880e-3269.88Acyl carrier protein n=3 Tax=Salvia TaxID=21880 Re... [more]
B9N135_POPTR5.240e-3169.05Acyl carrier protein n=7 Tax=Saliceae TaxID=238069... [more]
A0A7S0UHG3_HEMAN5.720e-3167.47Acyl carrier protein n=1 Tax=Hemiselmis andersenii... [more]
A0A2U1NGS6_ARTAN6.820e-3170.24Acyl carrier protein n=2 Tax=Artemisia annua TaxID... [more]
A0A059D2E0_EUCGR9.680e-3169.05Acyl carrier protein n=1 Tax=Eucalyptus grandis Ta... [more]
A0A2H5PT01_CITUN1.300e-3069.05Acyl carrier protein n=5 Tax=Citrus TaxID=2706 Rep... [more]
A0A6A3B832_HIBSY1.540e-3066.67Acyl carrier protein n=4 Tax=Hibiscus syriacus Tax... [more]
A0A7S0V3E4_9CRYP2.380e-3068.67Acyl carrier protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7N0TAU7_KALFE2.540e-3066.67Acyl carrier protein n=1 Tax=Kalanchoe fedtschenko... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126260contigM-pyrifera_M_contig126260:211..474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score115.5
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog3694.POPTR_0013s08220.1
KEGG koko:K03955
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
GOsGO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0031974,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0046872,GO:0046914,GO:0048037,GO:0050897,GO:0051192,GO:0070013,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509
EggNOG free text desc.Acyl carrier protein
EggNOG OGs37VI6@33090,3GJC4@35493,4JQCF@91835,COG0236@1,KOG1748@2759
Ec32 ortholog descriptionAcyl carrier protein
Ec32 orthologEc-06_000160.1
COG Functional cat.CIQ
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.2059522-CDS-M-pyrifera_M_contig126260:210..4741622815777.2059522-CDS-M-pyrifera_M_contig126260:210..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126260 211..474 -
1692277564.5404992-CDS-M-pyrifera_M_contig126260:210..4741692277564.5404992-CDS-M-pyrifera_M_contig126260:210..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126260 211..474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126260.5294.1prot_M-pyrifera_M_contig126260.5294.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126260 211..474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126260.5294.1

>prot_M-pyrifera_M_contig126260.5294.1 ID=prot_M-pyrifera_M_contig126260.5294.1|Name=mRNA_M-pyrifera_M_contig126260.5294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
VLQTFLERDEVLERVVRVVKNFEKVDESKVTEEAHLANDLGLDSLDTVEV
CMALEEEFCVQIPDAEAEKIFTIQDAIDFVATHPQAK*
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mRNA from alignment at M-pyrifera_M_contig126260:211..474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126260.5294.1 ID=mRNA_M-pyrifera_M_contig126260.5294.1|Name=mRNA_M-pyrifera_M_contig126260.5294.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig126260:211..474- (Macrocystis pyrifera P11B4 male)
GTGTTGCAGACTTTCTTGGAAAGGGACGAAGTGCTGGAACGGGTGGTGCG
CGTGGTGAAGAACTTTGAAAAGGTGGACGAAAGCAAAGTGACTGAAGAGG
CGCATCTGGCCAACGACCTGGGTCTTGACTCCCTGGACACGGTAGAAGTG
TGCATGGCACTCGAGGAGGAGTTCTGCGTGCAGATCCCAGACGCAGAAGC
CGAAAAGATCTTTACCATCCAAGATGCCATCGATTTCGTCGCTACCCACC
CACAAGCCAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126260:211..474-

>mRNA_M-pyrifera_M_contig126260.5294.1 ID=mRNA_M-pyrifera_M_contig126260.5294.1|Name=mRNA_M-pyrifera_M_contig126260.5294.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig126260:211..474- (Macrocystis pyrifera P11B4 male)
GTGTTGCAGACTTTCTTGGAAAGGGACGAAGTGCTGGAACGGGTGGTGCG
CGTGGTGAAGAACTTTGAAAAGGTGGACGAAAGCAAAGTGACTGAAGAGG
CGCATCTGGCCAACGACCTGGGTCTTGACTCCCTGGACACGGTAGAAGTG
TGCATGGCACTCGAGGAGGAGTTCTGCGTGCAGATCCCAGACGCAGAAGC
CGAAAAGATCTTTACCATCCAAGATGCCATCGATTTCGTCGCTACCCACC
CACAAGCCAAGTAAGTGTTGCAGACTTTCTTGGAAAGGGACGAAGTGCTG
GAACGGGTGGTGCGCGTGGTGAAGAACTTTGAAAAGGTGGACGAAAGCAA
AGTGACTGAAGAGGCGCATCTGGCCAACGACCTGGGTCTTGACTCCCTGG
ACACGGTAGAAGTGTGCATGGCACTCGAGGAGGAGTTCTGCGTGCAGATC
CCAGACGCAGAAGCCGAAAAGATCTTTACCATCCAAGATGCCATCGATTT
CGTCGCTACCCACCCACAAGCCAAGTAA
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