mRNA_M-pyrifera_M_contig126242.5292.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: A0A538CTB2_9ACTN (VOC family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CTB2_9ACTN) HSP 1 Score: 98.2 bits (243), Expect = 5.170e-22 Identity = 62/170 (36.47%), Postives = 85/170 (50.00%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRD-LGFTPTTQTAPD-PQDGSGFGIDGPAQWDAWMMSGSQAPP--VIDLLEWKTPAPDGAPHAAPDALGMIALRITTPTVDT-----------------------PTE---VTDPDGTRLRLEPAEGTDLVGVVINVADIESSTAWYAEMLGIEAI 420
NVNC DL+RS+AFY D +G T+T PD PQ G+ FG++ QWDAW++ G V+DLLEW+ P P G P G L IT P +D PT+ V+DPDGT++ L L V +N DIE S +Y +++G+ +
Sbjct: 15 NVNCSDLERSLAFYCDGIGLRKGTRTKPDAPQPGAAFGLE-QVQWDAWILHGDHGNEGVVLDLLEWQVPRPQGQPRQRVTDAGFSRLSITVPDLDATYARLVEMHADCWSEPTALDLEVPTKMFIVSDPDGTQIELLEGTSVRLSHVAVNCTDIERSQRFYEDVMGLRTV 183
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: A0A6B1BYQ8_9ACTN (VOC family protein n=5 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1BYQ8_9ACTN) HSP 1 Score: 92.4 bits (228), Expect = 8.650e-20 Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRDL-GFTPTTQTAPD-PQDGSGFGIDGPAQWDAWMMSGSQAPP--VIDLLEWKTPAPDGAPHAAPDALGMIALRITT 261
NVNC DL+RS+ FYRDL G PT +T P+ PQ G FG+D QWDAW++SG AP V+DLLEW+ P P G+P A LG L I T
Sbjct: 12 NVNCSDLERSLEFYRDLVGLKPTVRTQPERPQPGGAFGLD-EVQWDAWILSGDDAPDGAVLDLLEWQVPGPAGSPPATVTELGFGRLCILT 101
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: A0A7C8DJD4_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8DJD4_9DELT) HSP 1 Score: 89.7 bits (221), Expect = 8.640e-19 Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRD-LGFTPTTQTAPDPQDGSGFGIDGPAQWDAWMMSGSQ--APPVIDLLEWKTPAPDGAPHAAPDALGMIALRITTPTVD 273
NVNC DL++S+AFYRD +G P T P PQDG+GFG+ G QWDA ++ ++ A P +DLL+W P P GAP +G L + P VD
Sbjct: 12 NVNCSDLEQSLAFYRDAVGLVPQDHTNPVPQDGAGFGMTGSVQWDAHILQDARGYAGPAVDLLQWMVPVPVGAPGQVLSHIGFNRLCVVVPDVD 105
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: A0A6I2ZU39_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I2ZU39_9ACTN) HSP 1 Score: 85.5 bits (210), Expect = 5.390e-17 Identity = 58/172 (33.72%), Postives = 78/172 (45.35%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRDL-GFTPTTQTAPDP-QDGSGFGIDGPAQWDAWMMSGSQAPP--VIDLLEWKTPAPDGAPHAAPDALGMIALRITTPTVDTPTE----------------------------VTDPDGTRLRLEPAEGTDLVGVVINVADIESSTAWYAEMLGIEAI 420
N NC DL RS+ FYRDL G T T P Q G FG++ WDAWM+ +DLLEWKTP P GAP A + +G L + P + + V DPDG L+L T + VVIN D++ S A+Y +++G+ +
Sbjct: 62 NANCTDLKRSLGFYRDLLGLTQNTHPMPSILQRGDAFGLE-QVMWDAWMLQSDLGNDGLALDLLEWKTPLPAGAPPRAINEIGFHHLTMAVPDLHACVDRLRDAGVTIIGGPVDMDLGNGSSISMAMVEDPDGIPLQLIGGRDTRISHVVINTRDLDGSVAYYRDVMGMTVL 232
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: A0A7K2CRS4_9ACTN (Glyoxalase domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2CRS4_9ACTN) HSP 1 Score: 76.6 bits (187), Expect = 1.770e-15 Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRDL-GFTPTTQTAPD-PQDGSGFGIDGPAQWDAWMMSGSQAPP--VIDLLEWKTPAPDGAPHAAP 225
NVNC DL+RS+AFYRDL G PT +T P+ PQ G FG+D QWDAW++SG AP V+DLLE + G +P
Sbjct: 12 NVNCSDLERSLAFYRDLVGLKPTVRTRPERPQPGGAFGLD-EVQWDAWILSGDDAPDGVVLDLLECRCRGQPGRRRRSP 89
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: UPI0000E99A0C (VOC family protein n=1 Tax=Rhizorhabdus wittichii TaxID=160791 RepID=UPI0000E99A0C) HSP 1 Score: 55.5 bits (132), Expect = 1.030e-6 Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRDLGFTPTTQ--TAPDPQDGSGFGIDGPAQWDAWMMSGSQAPPV-IDLLEWKTPAPDGAPHAAPDALGMIALRI 255
N+NCRD + S+AFY+ LGF A + + G G G+ G + A + G+ +DLL+W +PA + AA LG + L +
Sbjct: 15 NLNCRDFETSLAFYKKLGFEVVMHFPAASNEEMGRGLGVSGQRMFGALLRLGTNRLSARLDLLQWTSPAANNDAAAAVQDLGFVRLAL 102
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: A0A7Z9HTU5_9BACT (VOC domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Z9HTU5_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 1.800e-6 Identity = 39/114 (34.21%), Postives = 53/114 (46.49%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRDLGF-----TPTTQTAPDPQDGSGFGIDGPAQWDAWMMSGSQAPPVIDLLEWKTPAPDGAPHAAPDALGMIALRITTPTVDTPTEVTDPDGTRLRLEPA 327
N+NC D DRSV FY+ LGF P T P+ + G+ P +M + +IDLLEWK P D P++ LG+ L ++T +D G L EPA
Sbjct: 58 NINCSDFDRSVEFYKSLGFKLLAMVPERNT---PEVAAAVGMP-PYLVKGGLMLLPGSTMMIDLLEWKEPHDDAPPYSHLYHLGIARLAMSTTDMDADVATLKSRGVELISEPA 167
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: A0A836TMB0_9PROT (VOC family protein (Fragment) n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836TMB0_9PROT) HSP 1 Score: 53.5 bits (127), Expect = 1.800e-6 Identity = 34/89 (38.20%), Postives = 44/89 (49.44%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRDLGFTPTTQTAPDPQDGSGFGIDGPAQWDAWMMSGSQAP--PVIDLLEWKTPAPDGAP--HAAPDALGMIALRI 255
NVNC D +RS+AFY+ +GF DG GF + A ++S P VIDL+EWK P GAP H A + I R+
Sbjct: 11 NVNCTDFERSLAFYKMIGFKEHINFEEGGVDGLGFEH---CRIKARLLSLGDDPRATVIDLIEWKEPKTAGAPYPHLAHTGIARICFRL 96
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: A0A2M9G3J9_9PROT (VOC domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2M9G3J9_9PROT) HSP 1 Score: 52.8 bits (125), Expect = 1.210e-5 Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRDLGFTPTTQTAPD-PQDGSG-------------FGIDGPAQWDA-WMMSGSQA-PPVIDLLEWKTPAPDGAP-HAAPDALGMIALRI 255
NVNC +LDRSVAFY+ LGF + D P DG G+D A+ A ++ G A ++DL+EW P P GAP H + + R+
Sbjct: 40 NVNCSNLDRSVAFYKALGFKVINDFSMDEPADGRDRTIGERTPGLAEILGVDPTARMRAAFLRLGDDARATILDLIEWIEPKPGGAPAHMTQMGMARLCFRV 141
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Match: A0A8F8WZZ5_9NOCA (VOC family protein n=2 Tax=Rhodococcus TaxID=1827 RepID=A0A8F8WZZ5_9NOCA) HSP 1 Score: 50.8 bits (120), Expect = 4.030e-5 Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1
Query: 1 NVNCRDLDRSVAFYRDLGFTPTTQTAPDPQDGSG----FGIDGPAQWDAWM-MSGSQAPPVIDLLEWKTPAPDGAPHAAPDALGMIALRITTPTVD 273
N+N DLDRSV FY+ LGF T + D G FG+ A++ + S+ V+DL E++ P G P+ + +GM+ L P ++
Sbjct: 12 NINVTDLDRSVDFYKKLGFVETARFVMDGHLGESTAEAFGVPFNRHRAAFLKLEDSENNMVLDLCEYEQPPTSGQPYQSLINVGMVRLAFHVPNIE 107 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126242.5292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig126242.5292.1 >prot_M-pyrifera_M_contig126242.5292.1 ID=prot_M-pyrifera_M_contig126242.5292.1|Name=mRNA_M-pyrifera_M_contig126242.5292.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp NVNCRDLDRSVAFYRDLGFTPTTQTAPDPQDGSGFGIDGPAQWDAWMMSGback to top mRNA from alignment at M-pyrifera_M_contig126242:91..510- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig126242.5292.1 ID=mRNA_M-pyrifera_M_contig126242.5292.1|Name=mRNA_M-pyrifera_M_contig126242.5292.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig126242:91..510- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig126242:91..510- >mRNA_M-pyrifera_M_contig126242.5292.1 ID=mRNA_M-pyrifera_M_contig126242.5292.1|Name=mRNA_M-pyrifera_M_contig126242.5292.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig126242:91..510- (Macrocystis pyrifera P11B4 male)back to top |