mRNA_M-pyrifera_M_contig10247.529.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10247.529.1
Unique NamemRNA_M-pyrifera_M_contig10247.529.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10247.529.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 7.340e-11
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 VYEKPMQALGQIRGLYKARARGRQLECSLCKELGATVDCRVGKCDEVFHFQ 153
            VYE      G I  LYKAR RGR LECSLCKE GATVDC   KC+EV+H++
Sbjct: 2407 VYEN-QNNFGTICELYKARGRGRLLECSLCKEPGATVDCSSHKCEEVYHYE 2456
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BLAST of mRNA_M-pyrifera_M_contig10247.529.1 vs. uniprot
Match: A0A6A4G1I2_9STRA (Chromodomain-helicase-DNA-binding protein 9 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A4G1I2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 9.690e-5
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   16 MQALGQIRGLYKARARGRQLECSLCKELGATVDCRVGKCDEVFHFQ 153
            ++A G I  L KA  RGRQL+CS C ++GATV C V KC   +H +
Sbjct: 2184 VKADGLIMNLPKAIKRGRQLKCSTCHKVGATVGCVVAKCRRNYHLR 2229
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10247.529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHU3_ECTSI7.340e-1162.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A4G1I2_9STRA9.690e-550.00Chromodomain-helicase-DNA-binding protein 9 n=11 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10247contigM-pyrifera_M_contig10247:205..357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog2880.D8LHU3
Preferred namePHF6
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K09186,ko:K09188,ko:K11422,ko:K14959,ko:K18494,ko:K22371
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04934,ko05202,map00310,map04934,map05202
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0000980,GO:0000981,GO:0001012,GO:0001067,GO:0001158,GO:0001227,GO:0001541,GO:0001654,GO:0001894,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005730,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007444,GO:0007482,GO:0007548,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007623,GO:0007632,GO:0008023,GO:0008092,GO:0008150,GO:0008152,GO:0008157,GO:0008168,GO:0008170,GO:0008213,GO:0008270,GO:0008276,GO:0008285,GO:0008306,GO:0008354,GO:0008406,GO:0008542,GO:0008585,GO:0008757,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0009994,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0012505,GO:0015631,GO:0016020,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016458,GO:0016477,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016604,GO:0016607,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018026,GO:0018027,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0030728,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032879,GO:0032922,GO:0032968,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035065,GO:0035097,GO:0035162,GO:0035216,GO:0035295,GO:0035326,GO:0035640,GO:0036211,GO:0040011,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042330,GO:0042393,GO:0042592,GO:0042800,GO:0042802,GO:0042803,GO:0042826,GO:0043021,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043565,GO:0043933,GO:0043966,GO:0043967,GO:0043984,GO:0044030,GO:0044085,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044648,GO:0044665,GO:0044703,GO:0044728,GO:0044877,GO:0045137,GO:0045322,GO:0045595,GO:0045637,GO:0045652,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046545,GO:0046660,GO:0046872,GO:0046914,GO:0046983,GO:0048096,GO:0048167,GO:0048168,GO:0048172,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048536,GO:0048568,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0048871,GO:0048872,GO:0048873,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051219,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051674,GO:0051704,GO:0060216,GO:0060249,GO:0060255,GO:0060429,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070577,GO:0071339,GO:0071440,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090304,GO:0097110,GO:0097159,GO:0097485,GO:0097659,GO:0099177,GO:0120036,GO:0120039,GO:0140030,GO:0140033,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901532,GO:1901564,GO:1901576,GO:1901674,GO:1901983,GO:1902036,GO:1902275,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1905269,GO:1905642,GO:1990234,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000615,GO:2000736,GO:2000756,GO:2001023,GO:2001025,GO:2001038,GO:2001040,GO:2001141,GO:2001252
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1080@2759,KOG1084@2759,KOG4443@2759
EC2.1.1.43,2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko04121
Exons1
Model size153
Cds size138
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.4105997-UTR-M-pyrifera_M_contig10247:204..2191622815527.4105997-UTR-M-pyrifera_M_contig10247:204..219Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10247 205..219 +
1692277449.9255931-UTR-M-pyrifera_M_contig10247:204..2191692277449.9255931-UTR-M-pyrifera_M_contig10247:204..219Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10247 205..219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.4249623-CDS-M-pyrifera_M_contig10247:219..3571622815527.4249623-CDS-M-pyrifera_M_contig10247:219..357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10247 220..357 +
1692277449.9391701-CDS-M-pyrifera_M_contig10247:219..3571692277449.9391701-CDS-M-pyrifera_M_contig10247:219..357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10247 220..357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10247.529.1prot_M-pyrifera_M_contig10247.529.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10247 220..357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10247.529.1

>prot_M-pyrifera_M_contig10247.529.1 ID=prot_M-pyrifera_M_contig10247.529.1|Name=mRNA_M-pyrifera_M_contig10247.529.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MQALGQIRGLYKARARGRQLECSLCKELGATVDCRVGKCDEVFHFQ
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mRNA from alignment at M-pyrifera_M_contig10247:205..357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10247.529.1 ID=mRNA_M-pyrifera_M_contig10247.529.1|Name=mRNA_M-pyrifera_M_contig10247.529.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig10247:205..357+ (Macrocystis pyrifera P11B4 male)
GTGTACGAGAAACCCATGCAGGCGTTAGGGCAGATCCGGGGGCTGTACAA
GGCGAGGGCGAGAGGGAGGCAACTGGAGTGCTCCCTGTGCAAGGAGCTGG
GCGCGACGGTGGACTGTAGGGTGGGGAAGTGCGATGAGGTTTTCCACTTT
CAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10247:205..357+

>mRNA_M-pyrifera_M_contig10247.529.1 ID=mRNA_M-pyrifera_M_contig10247.529.1|Name=mRNA_M-pyrifera_M_contig10247.529.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig10247:205..357+ (Macrocystis pyrifera P11B4 male)
ATGCAGGCGTTAGGGCAGATCCGGGGGCTGTACAAGGCGAGGGCGAGAGG
GAGGCAACTGGAGTGCTCCCTGTGCAAGGAGCTGGGCGCGACGGTGGACT
GTAGGGTGGGGAAGTGCGATGAGGTTTTCCACTTTCAGATGCAGGCGTTA
GGGCAGATCCGGGGGCTGTACAAGGCGAGGGCGAGAGGGAGGCAACTGGA
GTGCTCCCTGTGCAAGGAGCTGGGCGCGACGGTGGACTGTAGGGTGGGGA
AGTGCGATGAGGTTTTCCACTTTCAG
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