mRNA_M-pyrifera_M_contig126223.5288.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126223.5288.1
Unique NamemRNA_M-pyrifera_M_contig126223.5288.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: A0A6I6A6I1_9PLAN (Uncharacterized protein n=10 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A6I1_9PLAN)

HSP 1 Score: 276 bits (707), Expect = 2.330e-92
Identity = 144/150 (96.00%), Postives = 146/150 (97.33%), Query Frame = 1
Query:    1 YSSRGRSLNETIEHLKELFPAAMITREGRMLLVDASADLQEKVEAELNPSKRPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTPDN 450
            YS RGRSLNETIEHLKELFP AMITREGRMLLVDASADLQEKVEAELNPSKRPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQL QAGVDL QRIDISVQNADANEFFDVLFGPLNLSYQIEGIKV+LTP+N
Sbjct:   97 YSPRGRSLNETIEHLKELFPTAMITREGRMLLVDASADLQEKVEAELNPSKRPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLKQAGVDLNQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVTLTPNN 246          
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: A0A518A5C6_9PLAN (Uncharacterized protein n=5 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A5C6_9PLAN)

HSP 1 Score: 207 bits (527), Expect = 4.840e-63
Identity = 106/148 (71.62%), Postives = 124/148 (83.78%), Query Frame = 1
Query:    1 YSSRGRSLNETIEHLKELFPAAMITREGRMLLVDASADLQEKVEAELNPSKRPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTP 444
            Y  RG SL +T+ HLKE FP A IT  GRM+LVDAS+D+QEK+EA+LNPS+RP R M +   +V PI+RRKFTLR Q+VPVLAVMQKLEQSGIEF+YQ  QL QAGVDLT+RIDISV+NA+ANEFFD LFGPL LSYQIEG+ V+LTP
Sbjct:  258 YPPRGSSLADTVRHLKETFPEATITAAGRMVLVDASSDIQEKIEADLNPSRRPARNMPSKTSEVPPIRRRKFTLRVQQVPVLAVMQKLEQSGIEFKYQEDQLKQAGVDLTRRIDISVENANANEFFDALFGPLKLSYQIEGLTVTLTP 405          
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: A0A518IBA5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IBA5_9PLAN)

HSP 1 Score: 148 bits (374), Expect = 1.760e-40
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 1
Query:    1 YSSRGRSLNETIEHLKELFPAAMITREGRMLLVDASADLQEKVEAELNPSKRPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTP 444
            Y  R  S+   +E LK+ FP   +  EG  + V AS  + EK+E  LNP K P R  G  ++D +PIQRRKFTLR ++VPVLA+M+KLEQSGIEF+Y   QL  AG+DL +RIDISVQ A + EFFD LF  L+L +QI+G KV LTP
Sbjct:  233 YQPRRNSVALFVEQLKKTFPGITVKPEGNSINVQASFKVHEKIEQLLNPPKMP-RSAGPTKVDTVPIQRRKFTLRVKQVPVLAIMKKLEQSGIEFDYNASQLTDAGIDLNKRIDISVQEAKSLEFFDALFNTLDLDFQIQGTKVILTP 379          
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: A0A517V948_9PLAN (Uncharacterized protein n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V948_9PLAN)

HSP 1 Score: 144 bits (362), Expect = 1.270e-38
Identity = 73/148 (49.32%), Postives = 104/148 (70.27%), Query Frame = 1
Query:    1 YSSRGRSLNETIEHLKELFPAAMITREGRMLLVDASADLQEKVEAELNPSKRPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTP 444
            Y  RG+S++     LKE FP   +T  G++L ++A+ D+ +++E  LNP K   R + +   D +P+ RRKFTLR +KVPVLA+MQKLEQSGIEFEY  Q+L +A ++L Q ID++V +ADA EFFD LF    L Y+++G+K+SLTP
Sbjct:  242 YPLRGKSIDSVTRQLKEQFPDLKLTLNGKLLSIEAAMDVHDQIEQLLNPQKA-ARSVRSGVGDTVPLNRRKFTLRVKKVPVLAIMQKLEQSGIEFEYNKQELIEAKINLLQLIDVAVVDADAEEFFDALFSSFKLDYKMQGVKISLTP 388          
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: A0A517REK5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517REK5_9PLAN)

HSP 1 Score: 141 bits (355), Expect = 1.800e-37
Identity = 74/148 (50.00%), Postives = 99/148 (66.89%), Query Frame = 1
Query:    1 YSSRGRSLNETIEHLKELFPAAMITREGRMLLVDASADLQEKVEAELNPSKRPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTP 444
            Y  R  S++  I  LK+ FP   +   G+ + + AS ++ EK+E  LNP+K  +R       D +PIQRRKFTLR ++VP+LA+M KLEQSGIEF+Y   QL  AG+DL + ID++V++A   EFFD LF PLNL YQI+G KV LTP
Sbjct:  258 YQPRKGSVSALITQLKQAFPDLTVVPSGKSITIQASIEVHEKIEQLLNPTKT-LRSPKPVNADAVPIQRRKFTLRVKQVPLLAIMNKLEQSGIEFDYNASQLKSAGIDLNKLIDVTVKDAKPPEFFDALFSPLNLDYQIQGTKVILTP 404          
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: A6CBP4_9PLAN (Uncharacterized protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A6CBP4_9PLAN)

HSP 1 Score: 139 bits (350), Expect = 9.720e-37
Identity = 73/150 (48.67%), Postives = 104/150 (69.33%), Query Frame = 1
Query:    1 YSSRGRSLNETIEHLKELFPAAMITREGRMLLVDASADLQEKVEAELNPSK--RPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTP 444
            Y   G+S++     +KE FP  ++T  G++L V A+ D+ E++E  LNP K   PVR  G   +   P+ RRKFTLR +KVPVLA+MQKLEQSGIEFEY  Q+L +A ++L Q ID++V +A+A+EFFD LF    L Y+++G+K++LTP
Sbjct:  257 YPLPGKSIDSVTAQIKEQFPDLVLTSSGKLLSVQAAMDVHEQIEQLLNPKKTVHPVRAGGGKTV---PLNRRKFTLRVKKVPVLAIMQKLEQSGIEFEYDKQELVEADINLLQLIDVAVVDAEADEFFDALFSSFKLDYKMQGVKITLTP 403          
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: A0A517WVU1_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WVU1_9PLAN)

HSP 1 Score: 136 bits (343), Expect = 9.960e-36
Identity = 74/148 (50.00%), Postives = 98/148 (66.22%), Query Frame = 1
Query:    1 YSSRGRSLNETIEHLKELFPAAMITREGRMLLVDASADLQEKVEAELNPSKRPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTP 444
            Y+ R +S+   I  LKE FP   I R  + + +  +A++ E++E  LNP K  + K     I+ +PIQRRKFTLR +K P+LA+M KLE SGIEF Y  +QL +AG+DL Q IDISV++A A  FFD LF  LN+SY IEG K+ LTP
Sbjct:  256 YTPRAKSVAILINQLKERFPDIEIRRAEKTVSIRTTAEVHEEIEQHLNP-KAAINKRKPQSINAVPIQRRKFTLRVKKAPILAIMNKLEASGIEFHYNAKQLQEAGIDLNQLIDISVKDASAGTFFDSLFRTLNVSYAIEGTKIVLTP 402          
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: A0A355GCX6_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GCX6_9PLAN)

HSP 1 Score: 136 bits (342), Expect = 1.440e-35
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query:    1 YSSRGRSLNETIEHLKELFPAAMITREGRMLLVDASADLQEKVEAELNPSK--RPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTP 444
            Y  RG+ +      LKE FP    T  G++L V A+ D+ E++E  LNP +  +PVR  G  +   +P+ RRKFTLR +KVPVLA+MQKLEQSGIEFEY  Q+L +A ++L Q ID++V +ADA EFFD LF    L YQI+G KV+LTP
Sbjct:  257 YPLRGKPVESVTRQLKEQFPELEPTVTGKLLSVQAAMDVHEQIEQFLNPQRTAQPVRS-GVGK--TVPLSRRKFTLRVKKVPVLAIMQKLEQSGIEFEYDKQELAEAEINLLQLIDVAVLDADAEEFFDALFSSFKLDYQIQGTKVTLTP 403          
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: UPI0012D48BD6 (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI0012D48BD6)

HSP 1 Score: 90.1 bits (222), Expect = 5.320e-21
Identity = 42/72 (58.33%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  229 QKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTP 444
            +KVPVLA+MQKLEQSGIEFEY  Q+L +A ++L Q ID++V +A+A+EFFD LF    L Y+++G+K++LTP
Sbjct:    2 KKVPVLAIMQKLEQSGIEFEYDKQELVEADINLLQLIDVAVVDAEADEFFDALFSSFKLDYKMQGVKITLTP 73          
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Match: UPI00141E525F (hypothetical protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141E525F)

HSP 1 Score: 87.8 bits (216), Expect = 1.510e-17
Identity = 49/123 (39.84%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   82 GRMLLVDASADLQEKVEAELNPSKRPVRKMGTPQID-VLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQQLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTPD 447
            GR+L V A+A   +++ A LNP          P I+  +P+ RR+F L  + VP +AVM+KLE+SG+ F Y   ++ +AG+D  QRI I+V N +AN F   LF PL ++++ +G +V+L+P+
Sbjct:  277 GRVL-VQATAAGHKRLTALLNPETDEPE--PNPNIEPAIPLNRRRFLLNVENVPAIAVMKKLEESGVRFTYDKDEMAEAGIDFNQRISINVTNVNANVFLKALFEPLGVAFKYQGTRVTLSPN 396          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126223.5288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6I6A6I1_9PLAN2.330e-9296.00Uncharacterized protein n=10 Tax=Gimesia TaxID=164... [more]
A0A518A5C6_9PLAN4.840e-6371.62Uncharacterized protein n=5 Tax=Gimesia panareensi... [more]
A0A518IBA5_9PLAN1.760e-4054.05Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517V948_9PLAN1.270e-3849.32Uncharacterized protein n=2 Tax=Gimesia algae TaxI... [more]
A0A517REK5_9PLAN1.800e-3750.00Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A6CBP4_9PLAN9.720e-3748.67Uncharacterized protein n=7 Tax=Planctomycetaceae ... [more]
A0A517WVU1_9PLAN9.960e-3650.00Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A355GCX6_9PLAN1.440e-3551.33Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
UPI0012D48BD65.320e-2158.33hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
UPI00141E525F1.510e-1739.84hypothetical protein n=1 Tax=Rubinisphaera sp. JC6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126223contigM-pyrifera_M_contig126223:57..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score143.7
Seed ortholog evalue7.2e-32
Seed eggNOG ortholog344747.PM8797T_00447
Hectar predicted targeting categoryother localisation
EggNOG OGs2C8Q7@1,2J0UE@203682,33153@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.9784899-CDS-M-pyrifera_M_contig126223:56..5091622815776.9784899-CDS-M-pyrifera_M_contig126223:56..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126223 57..509 -
1692277564.4582045-CDS-M-pyrifera_M_contig126223:56..5091692277564.4582045-CDS-M-pyrifera_M_contig126223:56..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126223 57..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126223.5288.1prot_M-pyrifera_M_contig126223.5288.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126223 57..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126223.5288.1

>prot_M-pyrifera_M_contig126223.5288.1 ID=prot_M-pyrifera_M_contig126223.5288.1|Name=mRNA_M-pyrifera_M_contig126223.5288.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
YSSRGRSLNETIEHLKELFPAAMITREGRMLLVDASADLQEKVEAELNPS
KRPVRKMGTPQIDVLPIQRRKFTLRAQKVPVLAVMQKLEQSGIEFEYQPQ
QLNQAGVDLTQRIDISVQNADANEFFDVLFGPLNLSYQIEGIKVSLTPDN
*
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mRNA from alignment at M-pyrifera_M_contig126223:57..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126223.5288.1 ID=mRNA_M-pyrifera_M_contig126223.5288.1|Name=mRNA_M-pyrifera_M_contig126223.5288.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig126223:57..509- (Macrocystis pyrifera P11B4 male)
TACTCATCCCGAGGACGTTCCCTGAATGAAACGATTGAACATCTCAAAGA ATTGTTCCCTGCAGCGATGATCACCAGGGAAGGCAGGATGCTGCTGGTTG ATGCTTCTGCTGACCTTCAGGAAAAAGTTGAAGCAGAACTGAATCCCTCA AAGCGCCCTGTTCGTAAGATGGGAACTCCTCAAATTGACGTACTTCCCAT TCAACGCCGTAAGTTCACGCTTCGGGCTCAGAAAGTCCCGGTACTGGCCG TCATGCAGAAACTGGAGCAGTCCGGAATTGAATTTGAGTATCAGCCTCAG CAGTTAAATCAAGCTGGCGTCGATCTCACTCAGAGAATCGATATTTCGGT CCAGAACGCGGATGCGAATGAGTTTTTTGATGTCCTGTTCGGCCCTCTCA ATCTGTCTTATCAAATTGAGGGGATCAAGGTGTCTTTGACACCCGATAAT TAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126223:57..509-

>mRNA_M-pyrifera_M_contig126223.5288.1 ID=mRNA_M-pyrifera_M_contig126223.5288.1|Name=mRNA_M-pyrifera_M_contig126223.5288.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig126223:57..509- (Macrocystis pyrifera P11B4 male)
TACTCATCCCGAGGACGTTCCCTGAATGAAACGATTGAACATCTCAAAGA
ATTGTTCCCTGCAGCGATGATCACCAGGGAAGGCAGGATGCTGCTGGTTG
ATGCTTCTGCTGACCTTCAGGAAAAAGTTGAAGCAGAACTGAATCCCTCA
AAGCGCCCTGTTCGTAAGATGGGAACTCCTCAAATTGACGTACTTCCCAT
TCAACGCCGTAAGTTCACGCTTCGGGCTCAGAAAGTCCCGGTACTGGCCG
TCATGCAGAAACTGGAGCAGTCCGGAATTGAATTTGAGTATCAGCCTCAG
CAGTTAAATCAAGCTGGCGTCGATCTCACTCAGAGAATCGATATTTCGGT
CCAGAACGCGGATGCGAATGAGTTTTTTGATGTCCTGTTCGGCCCTCTCA
ATCTGTCTTATCAAATTGAGGGGATCAAGGTGTCTTTGACACCCGATAAT
TAGTACTCATCCCGAGGACGTTCCCTGAATGAAACGATTGAACATCTCAA
AGAATTGTTCCCTGCAGCGATGATCACCAGGGAAGGCAGGATGCTGCTGG
TTGATGCTTCTGCTGACCTTCAGGAAAAAGTTGAAGCAGAACTGAATCCC
TCAAAGCGCCCTGTTCGTAAGATGGGAACTCCTCAAATTGACGTACTTCC
CATTCAACGCCGTAAGTTCACGCTTCGGGCTCAGAAAGTCCCGGTACTGG
CCGTCATGCAGAAACTGGAGCAGTCCGGAATTGAATTTGAGTATCAGCCT
CAGCAGTTAAATCAAGCTGGCGTCGATCTCACTCAGAGAATCGATATTTC
GGTCCAGAACGCGGATGCGAATGAGTTTTTTGATGTCCTGTTCGGCCCTC
TCAATCTGTCTTATCAAATTGAGGGGATCAAGGTGTCTTTGACACCCGAT
AATTAG
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