mRNA_M-pyrifera_M_contig126178.5281.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126178.5281.1
Unique NamemRNA_M-pyrifera_M_contig126178.5281.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: A0A831ZKL0_9GAMM (Cupin domain-containing protein n=1 Tax=Crenotrichaceae bacterium TaxID=2268193 RepID=A0A831ZKL0_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 3.850e-21
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    4 SGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVYIQN 216
            SG E++LLR E GA+ P H H HDE CLVLEG+V + E + L +GDYH A +GS H VAH++TGAL+++Q+
Sbjct:   85 SGVESYLLRVEAGAQAPAHEHLHDELCLVLEGEVCF-EDVHLKTGDYHFAPKGSVHGVAHSKTGALLFLQS 154          
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: A0A2A5G6D9_9GAMM (Cupin_7 domain-containing protein n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A2A5G6D9_9GAMM)

HSP 1 Score: 85.5 bits (210), Expect = 3.080e-19
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 ESGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVYIQ 213
            ++G E +LL+ E GA+  PH H  DEHC+VLEGDV +G+ I L +GDYHLA +GS+H  A++  GAL+YIQ
Sbjct:   89 DNGIETYLLKIEAGAKDAPHIHTTDEHCIVLEGDVCFGD-IHLNAGDYHLAPKGSKHDEAYSIHGALLYIQ 158          
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: A0A5C7PR58_9BURK (Cupin domain-containing protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A5C7PR58_9BURK)

HSP 1 Score: 84.7 bits (208), Expect = 1.110e-18
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    7 GTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVYIQ 213
            G  ++LLR EPGARLPPH H HDE C+VLEG +  G  + LG G YHLA RG+ HA   +  GA V+++
Sbjct:  110 GVMSYLLRFEPGARLPPHRHPHDEECIVLEGRLRVGTRLELGPGGYHLAHRGALHAGIGSPQGATVFLR 178          
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: A0A259DCF7_9PROT (Cupin_7 domain-containing protein n=4 Tax=unclassified Hydrogenophilales TaxID=1798413 RepID=A0A259DCF7_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 1.540e-14
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 ESGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVYIQ 213
            ++ T +FLLR EPG+RLPPH H  DE  LVLEGD      +   +GDYHLA  G  H    TE+G L++I+
Sbjct:   79 DAQTRSFLLRMEPGSRLPPHDHALDEEALVLEGDATINGVL-CHAGDYHLAPHGKPHDWLTTESGCLLFIR 148          
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: A0A656HJM9_THINJ (Cupin_7 domain-containing protein n=1 Tax=Thiothrix nivea (strain ATCC 35100 / DSM 5205 / JP2) TaxID=870187 RepID=A0A656HJM9_THINJ)

HSP 1 Score: 72.0 bits (175), Expect = 4.620e-14
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    4 SGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVYIQ 213
            SG   +L R +PG  +P H H  DE C++LEG++ +G+ + L +GDYH A +G  H    TETGAL +++
Sbjct:   86 SGLLTYLARLDPGFEMPGHPHPFDEECIMLEGELWFGD-LHLKAGDYHFAAKGVYHGKLRTETGALAFLK 154          
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: A0A091APK1_9GAMM (Cupin_7 domain-containing protein n=1 Tax=Arenimonas oryziterrae DSM 21050 = YC6267 TaxID=1121015 RepID=A0A091APK1_9GAMM)

HSP 1 Score: 71.2 bits (173), Expect = 8.260e-14
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 ESGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVYIQNVRIPPGA 237
            ++ T+  L R +PG R+PPH H H+E CLVLEG + + + +   SGDY LAR G  H V     GAL  I+   IP  A
Sbjct:   70 DAQTQTTLWRVQPGGRVPPHVHAHEEECLVLEGRIVH-DGVSYFSGDYLLARAGESHRVFEAPEGALFLIRGEPIPDPA 147          
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: A0A1G0I0T4_9GAMM (Cupin_7 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 TaxID=1798290 RepID=A0A1G0I0T4_9GAMM)

HSP 1 Score: 70.9 bits (172), Expect = 1.190e-13
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 ESGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVYIQNVRIP 228
            E GT+  L R +PGAR+PPH H H+E CLV+EG +     I    GDY LA  G +HA   +  GAL  I+   +P
Sbjct:   72 EKGTQTTLWRVDPGARVPPHPHSHEEECLVIEGSI-IQNGIEYLPGDYLLADAGEKHAPFDSPRGALFLIRGELVP 146          
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: UPI0006888A1C (cupin domain-containing protein n=1 Tax=Thiothrix TaxID=1030 RepID=UPI0006888A1C)

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-13
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 ESGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVYIQ 213
            +SG   +L +  PG  +P H H  DE C++LEG++ +G+ + L +GDYH A +G  H    TETGAL +++
Sbjct:   85 DSGLLTYLAKLSPGFEMPGHPHPFDEECIMLEGELWFGD-LHLKAGDYHFASKGVHHGRLKTETGALAFLK 154          
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: A0A5C7PQV3_9BURK (Cupin_7 domain-containing protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A5C7PQV3_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 2.120e-13
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 ESGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVY 207
            + G  A L RA+ GA +PPH+H HDE CL++EG++   + + L  GDY LA  GS H +  T+TG ++Y
Sbjct:  199 QDGQAALLYRADAGAAVPPHTHGHDEECLMVEGELFLDDQL-LQRGDYQLAPTGSGHRITATDTGVVIY 266          
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Match: A0A433ACB9_HYPSQ (DUF4437 domain-containing protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A433ACB9_HYPSQ)

HSP 1 Score: 70.1 bits (170), Expect = 4.000e-13
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 ESGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHLARRGSEHAVAHTETGALVYI 210
            ++  ++ L+R +PGAR   H HD DE CLV++GD+ +G+ + L +GD+H A +G  H  A + +G L+YI
Sbjct:  108 KANRQSSLIRMKPGARYQSHDHDDDEECLVIQGDLKFGDLL-LKAGDFHFAPKGRTHPSAFSPSGCLLYI 176          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126178.5281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A831ZKL0_9GAMM3.850e-2156.34Cupin domain-containing protein n=1 Tax=Crenotrich... [more]
A0A2A5G6D9_9GAMM3.080e-1954.93Cupin_7 domain-containing protein n=1 Tax=Thiotric... [more]
A0A5C7PR58_9BURK1.110e-1853.62Cupin domain-containing protein n=1 Tax=Burkholder... [more]
A0A259DCF7_9PROT1.540e-1449.30Cupin_7 domain-containing protein n=4 Tax=unclassi... [more]
A0A656HJM9_THINJ4.620e-1442.86Cupin_7 domain-containing protein n=1 Tax=Thiothri... [more]
A0A091APK1_9GAMM8.260e-1444.30Cupin_7 domain-containing protein n=1 Tax=Arenimon... [more]
A0A1G0I0T4_9GAMM1.190e-1344.74Cupin_7 domain-containing protein n=1 Tax=Gammapro... [more]
UPI0006888A1C1.300e-1340.85cupin domain-containing protein n=1 Tax=Thiothrix ... [more]
A0A5C7PQV3_9BURK2.120e-1344.93Cupin_7 domain-containing protein n=1 Tax=Burkhold... [more]
A0A433ACB9_HYPSQ4.000e-1341.43DUF4437 domain-containing protein n=1 Tax=Hyphomic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126178contigM-pyrifera_M_contig126178:3..242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog713587.THITH_07770
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ChrR Cupin-like domain
EggNOG OGs1NDV4@1224,1SU3C@1236,COG1917@1,COG1917@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.7221236-CDS-M-pyrifera_M_contig126178:2..2421622815776.7221236-CDS-M-pyrifera_M_contig126178:2..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126178 3..242 +
1692277564.3698034-CDS-M-pyrifera_M_contig126178:2..2421692277564.3698034-CDS-M-pyrifera_M_contig126178:2..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126178 3..242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126178.5281.1prot_M-pyrifera_M_contig126178.5281.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126178 3..242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126178.5281.1

>prot_M-pyrifera_M_contig126178.5281.1 ID=prot_M-pyrifera_M_contig126178.5281.1|Name=mRNA_M-pyrifera_M_contig126178.5281.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
ESGTEAFLLRAEPGARLPPHSHDHDEHCLVLEGDVGYGETIRLGSGDYHL
ARRGSEHAVAHTETGALVYIQNVRIPPGA*
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mRNA from alignment at M-pyrifera_M_contig126178:3..242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126178.5281.1 ID=mRNA_M-pyrifera_M_contig126178.5281.1|Name=mRNA_M-pyrifera_M_contig126178.5281.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig126178:3..242+ (Macrocystis pyrifera P11B4 male)
GAGTCCGGCACGGAGGCGTTCCTCTTGCGTGCCGAGCCGGGCGCCCGTCT GCCGCCACACAGCCATGATCATGACGAACACTGCCTCGTGCTCGAGGGGG ATGTCGGCTACGGCGAGACGATCCGTCTCGGCAGCGGTGATTATCACCTC GCCCGGCGCGGCAGCGAACACGCCGTTGCGCACACCGAGACCGGGGCACT CGTCTATATCCAGAACGTAAGGATTCCGCCCGGCGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126178:3..242+

>mRNA_M-pyrifera_M_contig126178.5281.1 ID=mRNA_M-pyrifera_M_contig126178.5281.1|Name=mRNA_M-pyrifera_M_contig126178.5281.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig126178:3..242+ (Macrocystis pyrifera P11B4 male)
GAGTCCGGCACGGAGGCGTTCCTCTTGCGTGCCGAGCCGGGCGCCCGTCT
GCCGCCACACAGCCATGATCATGACGAACACTGCCTCGTGCTCGAGGGGG
ATGTCGGCTACGGCGAGACGATCCGTCTCGGCAGCGGTGATTATCACCTC
GCCCGGCGCGGCAGCGAACACGCCGTTGCGCACACCGAGACCGGGGCACT
CGTCTATATCCAGAACGTAAGGATTCCGCCCGGCGCCTGAGAGTCCGGCA
CGGAGGCGTTCCTCTTGCGTGCCGAGCCGGGCGCCCGTCTGCCGCCACAC
AGCCATGATCATGACGAACACTGCCTCGTGCTCGAGGGGGATGTCGGCTA
CGGCGAGACGATCCGTCTCGGCAGCGGTGATTATCACCTCGCCCGGCGCG
GCAGCGAACACGCCGTTGCGCACACCGAGACCGGGGCACTCGTCTATATC
CAGAACGTAAGGATTCCGCCCGGCGCCTGA
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