mRNA_M-pyrifera_M_contig126170.5279.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126170.5279.1
Unique NamemRNA_M-pyrifera_M_contig126170.5279.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: C5LU76_PERM5 (Uncharacterized protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LU76_PERM5)

HSP 1 Score: 100 bits (248), Expect = 2.440e-23
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   49 VLGAAHAWGSDGHRATAQVAAAFLSDNAASQASSILG-GQSLSDVATWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDCLGNICVAGAIFNYTNILSSPDASPA 366
            +LG AHAWG DGH   A +A   +SD      +  LG GQ +  VA WAD   H  ++ W+ PLH+++ P   C   Y RDC G+ CV GAI+NYTN   S   S A
Sbjct:   15 LLGYAHAWGEDGHSIVAAIAQRIVSDRVIEGVNETLGRGQDMIGVACWADKASHSAQYRWTAPLHFVDTPTKQCQMVYERDCRGDFCVIGAIYNYTNRAISKSVSRA 121          
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: D8RKB6_SELML (Aspergillus nuclease S(1) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RKB6_SELML)

HSP 1 Score: 94.4 bits (233), Expect = 6.040e-21
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   25 VALCAFF--AVLGAAHAWGSDGHRATAQVAAAFLSDNAASQASSILGGQSLSDVATWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDCLGN-----ICVAGAIFNYTNILSS 348
            +ALC     ++   A AWG +GHR T  +A  FLS  +      +L G+ L ++ +WADD++    F W+GPLHYI+ PD+ C ++Y RDC  +     +CVAGAI NY+  L +
Sbjct:    1 MALCVILIASIAVGAAAWGREGHRLTCMIAEPFLSSESKVALEELLPGRDLPELCSWADDIRRSYRFRWTGPLHYIDTPDNLCGYDYDRDCHDSRGEKDMCVAGAINNYSRQLET 115          
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: A0A7N0TRU1_KALFE (Aspergillus nuclease S(1) n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TRU1_KALFE)

HSP 1 Score: 94.4 bits (233), Expect = 7.520e-21
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   70 WGSDGHRATAQVAAAFLSDNAASQASSIL----GGQSLSDVATWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDCLG-----NICVAGAIFNYTNILSSP--DASP 363
            WG DGH AT ++A  FL++ A++   S+L     GQ L++V +W D+++H   + W+GPLHYI++PD  C++ Y RDC       ++CV GAI+NYT  L S   D SP
Sbjct:   25 WGKDGHYATCKIAEEFLTEEASAAVKSLLPDYADGQ-LANVCSWPDEIRHSYRWRWTGPLHYIDVPDFVCNYNYCRDCHDPARHKDVCVTGAIYNYTRQLGSTYYDPSP 132          
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: A0A822XV99_NELNU (Aspergillus nuclease S(1) n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XV99_NELNU)

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-20
Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   31 LCAFFAVLGAAHAWGSDGHRATAQVAAAFLSDNAASQASSILGGQSLSDVA---TWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDC---LGNI--CVAGAIFNYT 333
            + A   VL    AWG +GH A  ++A  FL+++AA+   ++L   +  D+A   +WAD+++H   + WSGPLHY++ PD  C++EY RDC    GN   CV GAIFNY+
Sbjct:   12 ILALLQVLPGILAWGKEGHYAICKIAEGFLNEDAATTVKALLPDYAKGDLAAVCSWADEIRHNFHWRWSGPLHYVDTPDFRCNYEYCRDCHDLSGNKDRCVTGAIFNYS 120          
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: B4FX99_MAIZE (Aspergillus nuclease S(1) n=1 Tax=Zea mays TaxID=4577 RepID=B4FX99_MAIZE)

HSP 1 Score: 90.5 bits (223), Expect = 1.610e-20
Identity = 47/117 (40.17%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   16 SSVVALCAFFAVLGAAHAWGSDGHRATAQVAAAFLSDNAASQASSIL---GGQSLSDVATWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDCLG-----NICVAGAIFNYTNIL 342
            S+ + L    + L AA  W  +GH  T Q+A   L  +AA    ++L    G  LS +  W D V+H   + W+GPLH+I+ PD++C F+YSRDC G     ++CVAGAI N+T+ L
Sbjct:    9 SAALGLVVLASALPAARPWSKEGHVLTCQIAQGLLEPDAAHAVRNLLPDDAGGDLSALCVWPDQVRHWYRYMWTGPLHFIDTPDEACSFDYSRDCHGPDGAKDMCVAGAIANFTSQL 125          
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: A0A7V1M188_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1M188_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 3.540e-20
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    7 RSSSSVVALCAFFAVLGAAHAWGSDGHRATAQVAAAFLSDNAASQASSILGGQSLSDVATWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDCLGNICVAGAIFNYTNILSSPDASP 363
            R   + V L A  + +G    WG DGH   AQ+A   LS  A  +  ++LG   L++VA+WAD V+ E  +EWS PLHY+N+P D+  + +SRDC    CV  AI +++ IL+  + SP
Sbjct:   38 RMKLAAVGLAALLSAMGG---WGKDGHAIVAQIAWDELSPEARGEIRTLLGDSGLAEVASWADMVRREPNYEWSAPLHYVNMPADADAYIHSRDCPEQGCVVSAIDHFSKILAERNNSP 153          
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: A0A1D1Y456_9ARAE (Aspergillus nuclease S(1) n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y456_9ARAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.700e-20
Identity = 51/130 (39.23%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    1 MPRSSSSVV--ALCAFFAVLGAAHAWGSDGHRATAQVAAAFLSDNAASQASSIL---GGQSLSDVATWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDCLG-----NICVAGAIFNYTNILSSPDAS 360
            M R  SSVV   L      L  A +WG +GH AT ++A   LS+ A+S    +L    G  L+ + +W D+++H   + W+GPLHYI+ PD  C++ Y RDC       ++CVAGAI+NYT  L++   S
Sbjct:    1 MGRLDSSVVRWVLMVLLQFLPGALSWGKEGHYATCKIAEGLLSEEASSAIKKLLPDYAGGDLASLCSWPDEIRHNFRWHWTGPLHYIDTPDFKCNYGYCRDCHEFAAHKDMCVAGAIYNYTAQLNAYQTS 130          
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: G7ILF4_MEDTR (Aspergillus nuclease S(1) n=7 Tax=Trifolieae TaxID=163742 RepID=G7ILF4_MEDTR)

HSP 1 Score: 92.0 bits (227), Expect = 5.870e-20
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   22 VVALCAFFAVLGAAHAWGSDGHRATAQVAAAFLSDNAASQASSILGGQ---SLSDVATWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDCLGNICVAGAIFNYTNILS 345
            V+ LC+ F+++     W  +GH  T  +A A L   A+     +L      +LS +  W D ++H  ++ W+ PLH+I+ PD+ C F+YSRDCL ++CVAGAI N+T+ LS
Sbjct:   16 VLFLCSTFSIVPGVIGWSKEGHEMTCLIAQALLKPEASEAVHHLLPPHVNGNLSALCVWPDQIRHWYKYRWTSPLHFIDTPDEKCGFQYSRDCLEDMCVAGAIKNFTSQLS 126          
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: D7SSG7_VITVI (Aspergillus nuclease S(1) n=3 Tax=Vitis TaxID=3603 RepID=D7SSG7_VITVI)

HSP 1 Score: 92.4 bits (228), Expect = 6.240e-20
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   70 WGSDGHRATAQVAAAFLSDNAASQASSILGGQSLSDVA---TWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDCLG-----NICVAGAIFNYTNILSS 348
            WG +GH A  ++A  FLS++A     ++L   +  D+A   +WAD+++H   + WSGPLHY++ PD  C++EY RDC       +ICV GAI+NYT  L+S
Sbjct:   25 WGKEGHYAVCKIAEGFLSEDALGAVKALLPDYAEGDLAAVCSWADEIRHNFHWRWSGPLHYVDTPDYRCNYEYCRDCHDFRGHKDICVTGAIYNYTKQLTS 125          
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Match: B4ERM5_HUMLU (Aspergillus nuclease S(1) n=2 Tax=Cannabaceae TaxID=3481 RepID=B4ERM5_HUMLU)

HSP 1 Score: 91.7 bits (226), Expect = 7.960e-20
Identity = 50/124 (40.32%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 MPRSSSSVVALCAFFAV-LGAAHAWGSDGHRATAQVAAAFLSDNAASQASSILGGQ---SLSDVATWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDC-----LGNICVAGAIFNYTNILS 345
            M R S  +V + A  ++ + +AH W  +GH  T Q+A A L   AA    ++L       LS +  W D V+H   + W+ PLH+I+ PD +C F+YSRDC     L N+CVAGAI N+T+ LS
Sbjct:    1 MDRYSFGLVLVLALASITVPSAHGWSKEGHTMTCQIAQALLDSEAAEAVRNLLPDYVNGDLSALCVWPDQVRHWYRYRWTSPLHFIDTPDQACSFDYSRDCHDQHGLENMCVAGAIQNFTSQLS 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126170.5279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C5LU76_PERM52.440e-2343.93Uncharacterized protein n=1 Tax=Perkinsus marinus ... [more]
D8RKB6_SELML6.040e-2140.00Aspergillus nuclease S(1) n=4 Tax=Selaginella moel... [more]
A0A7N0TRU1_KALFE7.520e-2143.12Aspergillus nuclease S(1) n=1 Tax=Kalanchoe fedtsc... [more]
A0A822XV99_NELNU1.200e-2042.20Aspergillus nuclease S(1) n=1 Tax=Nelumbo nucifera... [more]
B4FX99_MAIZE1.610e-2040.17Aspergillus nuclease S(1) n=1 Tax=Zea mays TaxID=4... [more]
A0A7V1M188_9BACT3.540e-2040.34Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A1D1Y456_9ARAE5.700e-2039.23Aspergillus nuclease S(1) n=2 Tax=Anthurium amnico... [more]
G7ILF4_MEDTR5.870e-2038.74Aspergillus nuclease S(1) n=7 Tax=Trifolieae TaxID... [more]
D7SSG7_VITVI6.240e-2042.57Aspergillus nuclease S(1) n=3 Tax=Vitis TaxID=3603... [more]
B4ERM5_HUMLU7.960e-2040.32Aspergillus nuclease S(1) n=2 Tax=Cannabaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126170contigM-pyrifera_M_contig126170:82..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score97.8
Seed ortholog evalue3.7e-18
Seed eggNOG ortholog81824.XP_001745952.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.S1/P1 Nuclease
EggNOG OGs28JIP@1,2QRXU@2759,38F1U@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.6510057-CDS-M-pyrifera_M_contig126170:81..4471622815776.6510057-CDS-M-pyrifera_M_contig126170:81..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126170 82..447 +
1692277564.341569-CDS-M-pyrifera_M_contig126170:81..4471692277564.341569-CDS-M-pyrifera_M_contig126170:81..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126170 82..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126170.5279.1prot_M-pyrifera_M_contig126170.5279.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126170 82..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126170.5279.1

>prot_M-pyrifera_M_contig126170.5279.1 ID=prot_M-pyrifera_M_contig126170.5279.1|Name=mRNA_M-pyrifera_M_contig126170.5279.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MPRSSSSVVALCAFFAVLGAAHAWGSDGHRATAQVAAAFLSDNAASQASS
ILGGQSLSDVATWADDVKHEREFEWSGPLHYINIPDDSCDFEYSRDCLGN
ICVAGAIFNYTNILSSPDASPA
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mRNA from alignment at M-pyrifera_M_contig126170:82..447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126170.5279.1 ID=mRNA_M-pyrifera_M_contig126170.5279.1|Name=mRNA_M-pyrifera_M_contig126170.5279.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig126170:82..447+ (Macrocystis pyrifera P11B4 male)
ATGCCCCGATCCTCCTCCTCAGTCGTTGCACTGTGCGCTTTCTTCGCCGT TCTCGGCGCTGCGCACGCGTGGGGAAGTGACGGCCACCGCGCAACGGCGC AAGTAGCGGCCGCCTTCCTCAGCGACAATGCGGCGTCGCAAGCCAGCTCC ATCCTGGGCGGCCAGTCTCTCAGCGACGTGGCCACATGGGCAGATGATGT GAAGCACGAGAGGGAGTTCGAGTGGTCCGGCCCGCTGCACTACATCAACA TCCCTGACGATTCCTGCGATTTCGAGTACTCCCGCGATTGTCTGGGCAAC ATCTGCGTCGCTGGCGCCATCTTCAACTACACCAACATCCTCTCTTCGCC TGACGCCTCCCCTGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126170:82..447+

>mRNA_M-pyrifera_M_contig126170.5279.1 ID=mRNA_M-pyrifera_M_contig126170.5279.1|Name=mRNA_M-pyrifera_M_contig126170.5279.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig126170:82..447+ (Macrocystis pyrifera P11B4 male)
ATGCCCCGATCCTCCTCCTCAGTCGTTGCACTGTGCGCTTTCTTCGCCGT
TCTCGGCGCTGCGCACGCGTGGGGAAGTGACGGCCACCGCGCAACGGCGC
AAGTAGCGGCCGCCTTCCTCAGCGACAATGCGGCGTCGCAAGCCAGCTCC
ATCCTGGGCGGCCAGTCTCTCAGCGACGTGGCCACATGGGCAGATGATGT
GAAGCACGAGAGGGAGTTCGAGTGGTCCGGCCCGCTGCACTACATCAACA
TCCCTGACGATTCCTGCGATTTCGAGTACTCCCGCGATTGTCTGGGCAAC
ATCTGCGTCGCTGGCGCCATCTTCAACTACACCAACATCCTCTCTTCGCC
TGACGCCTCCCCTGCTATGCCCCGATCCTCCTCCTCAGTCGTTGCACTGT
GCGCTTTCTTCGCCGTTCTCGGCGCTGCGCACGCGTGGGGAAGTGACGGC
CACCGCGCAACGGCGCAAGTAGCGGCCGCCTTCCTCAGCGACAATGCGGC
GTCGCAAGCCAGCTCCATCCTGGGCGGCCAGTCTCTCAGCGACGTGGCCA
CATGGGCAGATGATGTGAAGCACGAGAGGGAGTTCGAGTGGTCCGGCCCG
CTGCACTACATCAACATCCCTGACGATTCCTGCGATTTCGAGTACTCCCG
CGATTGTCTGGGCAACATCTGCGTCGCTGGCGCCATCTTCAACTACACCA
ACATCCTCTCTTCGCCTGACGCCTCCCCTGCT
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