mRNA_M-pyrifera_M_contig12616.5275.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12616.5275.1
Unique NamemRNA_M-pyrifera_M_contig12616.5275.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: Q8QN96_ESV1K (EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN96_ESV1K)

HSP 1 Score: 65.1 bits (157), Expect = 3.540e-13
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 RMMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEACKV 117
            RMMYG GDD++PLPETVACMQQ LV+EYV H+T EAC V
Sbjct:    8 RMMYGAGDDEHPLPETVACMQQ-LVAEYVSHVTSEACLV 45
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: D8LPL2_ECTSI (EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL2_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 6.890e-12
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 MMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEACKV 117
            MMYG GDD++PLPETV CMQQ LV+EYV H+T EAC V
Sbjct:    1 MMYGAGDDEHPLPETVGCMQQ-LVAEYVSHVTSEACLV 37
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: Q8QN93_ESV1K (EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN93_ESV1K)

HSP 1 Score: 60.8 bits (146), Expect = 2.870e-11
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 MMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEACKV 117
            MMYG GDD++PLPETV CMQQ LV+EYV H+T EAC V
Sbjct:   32 MMYGAGDDEHPLPETVDCMQQ-LVAEYVSHVTSEACLV 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 5.630e-9
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 MMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEACK 114
            MMYGFGD+ +PLPETVA MQ+ +V EYV+++TD+ACK
Sbjct:   31 MMYGFGDEQHPLPETVAYMQE-VVGEYVQYVTDKACK 66
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: A0A6A5C0T4_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C0T4_NAEFO)

HSP 1 Score: 50.4 bits (119), Expect = 4.230e-6
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 RMMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEACKV 117
            +MMYGFGD  NPLPETVA M++ LV EYV  I  EA K+
Sbjct:  196 QMMYGFGDVKNPLPETVALMEE-LVKEYVHEIVTEATKM 233
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: A0A1D1XUP5_9ARAE (Transcription initiation factor TFIID subunit 13 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XUP5_9ARAE)

HSP 1 Score: 46.6 bits (109), Expect = 3.510e-5
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    4 MMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEA 108
            MMYGFGDD NPLPETVA ++  +V EYV  +T +A
Sbjct:   38 MMYGFGDDPNPLPETVALVED-IVVEYVTDLTHKA 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: A0A1D1XKD5_9ARAE (Transcription initiation factor TFIID subunit 13 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XKD5_9ARAE)

HSP 1 Score: 45.8 bits (107), Expect = 5.030e-5
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    4 MMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEAC 111
            MMYGFGDD NPLPETVA ++  +V EYV  +  + C
Sbjct:   38 MMYGFGDDPNPLPETVALVED-IVVEYVTDLICQCC 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: A0A7J6V3A9_THATH (Transcription initiation factor TFIID subunit 13-like n=2 Tax=Ranunculaceae TaxID=3440 RepID=A0A7J6V3A9_THATH)

HSP 1 Score: 46.2 bits (108), Expect = 6.700e-5
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    4 MMYGFGDDDNPLPETVACMQQ---QLVSEYVRHITDEACK 114
            MMYGFGDD NPLPETVA ++    + V++ V    D ACK
Sbjct:   60 MMYGFGDDPNPLPETVALLEDIAVEYVTDLVNKAQDIACK 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: A0A078FRE9_BRANA ((rape) hypothetical protein n=6 Tax=Brassiceae TaxID=981071 RepID=A0A078FRE9_BRANA)

HSP 1 Score: 45.8 bits (107), Expect = 6.850e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 MMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEACKV 117
            MMYGFGD+ NPLPETVA ++  +V EYV  +T +A ++
Sbjct:   38 MMYGFGDEQNPLPETVALVED-IVVEYVTDLTHKAQEI 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Match: A0A078FQ38_BRANA (BnaC05g01350D protein n=2 Tax=Brassica napus TaxID=3708 RepID=A0A078FQ38_BRANA)

HSP 1 Score: 45.8 bits (107), Expect = 6.960e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 MMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEACKV 117
            MMYGFGD+ NPLPETVA ++  +V EYV  +T +A ++
Sbjct:   39 MMYGFGDEQNPLPETVALVED-IVVEYVTDLTHKAQEI 75
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12616.5275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Q8QN96_ESV1K3.540e-1376.92EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL2_ECTSI6.890e-1273.68EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Q8QN93_ESV1K2.870e-1173.68EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D7FXB5_ECTSI5.630e-967.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6A5C0T4_NAEFO4.230e-664.10Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A1D1XUP5_9ARAE3.510e-562.86Transcription initiation factor TFIID subunit 13 n... [more]
A0A1D1XKD5_9ARAE5.030e-558.33Transcription initiation factor TFIID subunit 13 n... [more]
A0A7J6V3A9_THATH6.700e-555.00Transcription initiation factor TFIID subunit 13-l... [more]
A0A078FRE9_BRANA6.850e-555.26(rape) hypothetical protein n=6 Tax=Brassiceae Tax... [more]
A0A078FQ38_BRANA6.960e-555.26BnaC05g01350D protein n=2 Tax=Brassica napus TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12616contigM-pyrifera_M_contig12616:4426..5500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionEsV-1-193/196 Transcription initiation factor TFIID subunit 13
Ec32 orthologEc-06_004990.1
Exons2
Model size117
Cds size114
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12616.5275.1prot_M-pyrifera_M_contig12616.5275.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12616 4426..5497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.4896414-CDS-M-pyrifera_M_contig12616:4425..44761622815776.4896414-CDS-M-pyrifera_M_contig12616:4425..4476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12616 4426..4476 -
1692277564.2713585-CDS-M-pyrifera_M_contig12616:4425..44761692277564.2713585-CDS-M-pyrifera_M_contig12616:4425..4476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12616 4426..4476 -
1622815776.5028825-CDS-M-pyrifera_M_contig12616:5434..54971622815776.5028825-CDS-M-pyrifera_M_contig12616:5434..5497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12616 5435..5497 -
1692277564.2846467-CDS-M-pyrifera_M_contig12616:5434..54971692277564.2846467-CDS-M-pyrifera_M_contig12616:5434..5497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12616 5435..5497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.5178826-UTR-M-pyrifera_M_contig12616:5497..55001622815776.5178826-UTR-M-pyrifera_M_contig12616:5497..5500Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12616 5498..5500 -
1692277564.2921607-UTR-M-pyrifera_M_contig12616:5497..55001692277564.2921607-UTR-M-pyrifera_M_contig12616:5497..5500Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12616 5498..5500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12616.5275.1

>prot_M-pyrifera_M_contig12616.5275.1 ID=prot_M-pyrifera_M_contig12616.5275.1|Name=mRNA_M-pyrifera_M_contig12616.5275.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
MMYGFGDDDNPLPETVACMQQQLVSEYVRHITDEACKV
back to top

mRNA from alignment at M-pyrifera_M_contig12616:4426..5500-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12616.5275.1 ID=mRNA_M-pyrifera_M_contig12616.5275.1|Name=mRNA_M-pyrifera_M_contig12616.5275.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1075bp|location=Sequence derived from alignment at M-pyrifera_M_contig12616:4426..5500- (Macrocystis pyrifera P11B4 male)
AGGATGATGTACGGCTTCGGCGACGATGATAACCCTCTACCGGAGACTGT
GGCTTGCATGCAACAGGTAGACACAGAACAAGTATTGCAGGCGCACCGCC
GTTGAGTGCGTGGCTGTATCGCGCTGTGCTATCAATTGAAACGCCGCCCA
TCGGCAGCTTTAGGTAGAACTTTCCGCTGCTTGCCATACCGCCCATCGAG
ATGTTTGGTAGAATAGTACGCTGCTTGCCAGAACCCGAGCTTTCAGCATC
AGAAGGTCCGTGAACCGCCCGCCGACTATTAGTAGAGCCATTGCACGACG
TATCGGACGTGACCGGTGTACATAGAAAAAATCTGCACGCGAAGGCTACC
TCCTCCCACGGGCGAGCCTCCTGCCCGGCCACACTGCCTTTATTGGAGCA
GCTGAAAAATCCGAAGCGAACTGAAGCCGCCGGTCGCTGGACGTCGTTGC
TGCCTGGGTTCTTACCGTCTACCACGCAAGATAACACAATCTCTCGGGCA
AACTTCCTATTAATAGCCGATATTCACCAAAACCAGCGGGTGCACAGCAC
ACACAGTGAAAATGTCGGCTCTGAAAACATCTCGTCGAGATATTGCCGTA
GGTGCATCGCTCGGCGTTTGCACTCTCCTTGTTGTCGAGGAAAACGGCTT
TGGAAACTCGTCCGAGGGGACGTGTTTTTTTCCGTTTTTTTTACGGAAGC
TACAAGACTTGTCTTTCCACGGGTGCGAACTACCACAAATATAAACTGAC
ACTCTCAAGTGTTGCTGTCCGAGGTGTTGACTGCTCCACTAAAACACAGG
CTCTGCAGCGCGGTGATCAACATTCTGTGACGATGCATGCATTCTTGGCT
AACGGCACCGTATGGCACGCTGACTCAGTTGCACATTGTTGGGAACAACG
CGTGTGCGGTGCCATTTCCTTTTTTCCTCCCCAGCCCATGTTCGGAATCC
TTGCTGACGCTCTCCATTGCCCTTACCCTTCCGTTGCTGCGCCCGATGCC
ATCGAATTCGTTGAACGTCGAGAGCAGCTGGTAAGCGAGTACGTCCGACA
CATCACTGACGAGGCCTGCAAGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12616:4426..5500-

>mRNA_M-pyrifera_M_contig12616.5275.1 ID=mRNA_M-pyrifera_M_contig12616.5275.1|Name=mRNA_M-pyrifera_M_contig12616.5275.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig12616:4426..5500- (Macrocystis pyrifera P11B4 male)
ATGATGTACGGCTTCGGCGACGATGATAACCCTCTACCGGAGACTGTGGC
TTGCATGCAACAGATGATGTACGGCTTCGGCGACGATGATAACCCTCTAC
CGGAGACTGTGGCTTGCATGCAACAGCAGCTGGTAAGCGAGTACGTCCGA
CACATCACTGACGAGGCCTGCAAGGTGCAGCTGGTAAGCGAGTACGTCCG
ACACATCACTGACGAGGCCTGCAAGGTG
back to top