mRNA_M-pyrifera_M_contig1261.5269.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1261.5269.1
Unique NamemRNA_M-pyrifera_M_contig1261.5269.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: D7FJS2_ECTSI (V-type proton ATPase subunit G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS2_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.950e-60
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 3 
Query:   57 TATMSTQIQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVCHIVYVVPEGLKSREMQQA 422
            T+ MSTQIQELIAAETKASSIVAEARA+RSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGK+ DTLGAQTD  I  MT DYS+NK+ VGDLLVHEVCHIVY VPEGLKSREMQQA
Sbjct:   34 TSIMSTQIQELIAAETKASSIVAEARASRSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKEGDTLGAQTDAAIQSMTDDYSKNKEVVGDLLVHEVCHIVYSVPEGLKSREMQQA 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: A0A6H5KHJ3_9PHAE (V-type proton ATPase subunit G n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ3_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 7.540e-60
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 3 
Query:   66 MSTQIQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVCHIVYVVPEGLKSREMQQA 422
            MSTQIQELIAAETKAS+IVAEARA+RSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGK+ DTLGAQT+  I  MT DYS+NKK VGDLLVHEVCHIVY VPEGLKSREMQQA
Sbjct:    1 MSTQIQELIAAETKASAIVAEARASRSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKEGDTLGAQTEAAIQSMTDDYSKNKKVVGDLLVHEVCHIVYSVPEGLKSREMQQA 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: A0A7S2UYL7_9STRA (V-type proton ATPase subunit G n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYL7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-16
Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 3 
Query:   78 IQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVC-HIVYVVPEGLKSRE 410
            IQEL+AAE +ASSIV EARAAR++RMKEAK EAE     FR  KE  + A+  +S GS+  D   L   TD +I  M G Y  N +TV  +LV +VC ++   VPE L  RE
Sbjct:    6 IQELMAAENRASSIVQEARAARTERMKEAKIEAERHIEEFRKTKEEEFNAASAQSSGSSNTDFSELEKTTDKEIDDMRGQYQTNSQTVIQMLVDKVCGNVPLTVPEALHKRE 117
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: A0A6V2B9Z3_9STRA (V-type proton ATPase subunit G n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2B9Z3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.320e-13
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 3 
Query:   78 IQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVCHIVYVVP 389
            IQEL+AAET+AS IVA+AR AR  RMK+AK +A+ L + +RAEK+  +  S+  + GS G  S  L A+T+ +I  M G YSRN +   D+L+ + C +   VP
Sbjct:    7 IQELMAAETRASQIVADARLARGDRMKQAKADAQELIDTYRAEKQDEFNNSVLAAGGSGGSASAKLQAETNNEIQIMQGLYSRNSQKAIDVLLSKCCEVSLEVP 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: A0A7S0ARJ4_9STRA (V-type proton ATPase subunit G n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ARJ4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.880e-12
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 3 
Query:   72 TQIQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVCHIVYVVP 389
            T IQEL+AAET+AS IVAEARAAR  RMK+AK +A+ L +A++ EK+  + + +  + G+ G  S  L A+T+  I  M G +  N +   D+L+ + C +   VP
Sbjct:    5 TGIQELMAAETRASQIVAEARAARGDRMKQAKVDAQTLIDAYKGEKQEEFNSRVLAAGGTGGSASAKLQAETNNNIQAMQGQFQSNSQKATDVLLSKCCEVSLEVP 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: A0A7S1VIJ7_9STRA (V-type proton ATPase subunit G n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIJ7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.970e-12
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 3 
Query:   78 IQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVCHIVYVVP 389
            IQEL+AAE +AS IVAEAR  R  RMK+AK EA+ L +A+RAEK++ +   +    GS G  S  L  +T  +I+ M G++ +N +   D+L+ + C +   VP
Sbjct:    7 IQELMAAEQRASQIVAEARVGRGDRMKQAKTEAQELIDAYRAEKQSEFNNMVLSKGGSEGASSQKLQQETSSEINSMQGNFQKNAQKAVDVLLSKCCEVSLEVP 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: A0A8K1CF74_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF74_PYTOL)

HSP 1 Score: 68.2 bits (165), Expect = 7.740e-12
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 3 
Query:   78 IQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVCHIVYVVPEGLKS 404
            I+EL+AAETKAS I++EAR  R +R+K+AK EAEA  NA+R ++E A+Q  M  +    G D   L  +T+ +I +M G++ +NK  V  ++V  V  +   VPE  K+
Sbjct:    7 IKELMAAETKASKIISEARQERGERLKQAKIEAEAEINAYRKQQEHAFQ--MNANTDLMGDDPSILDEETNREIQKMRGEFQQNKDGVIQMMVKHVGRVQVKVPEARKA 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: A0A485L8X0_9STRA (V-type proton ATPase subunit G n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8X0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.170e-11
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 3 
Query:   78 IQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGST---GKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVCHIVYVVPEGLK 401
            I+EL+AAETKAS I++EAR  R  R+K+AK EAEA  NA+R +++  +Q      M ST   G DS  +  +TD  I +M  DY +NK  V  L+   V  +V  VP   K
Sbjct:    7 IKELMAAETKASKIISEARQERGDRLKQAKAEAEAEINAYRRQQDQVFQ------MNSTDLLGDDSSIMDKETDQDIQKMKADYQKNKDAVLKLMYDHVTKVVLKVPAARK 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: A0A7S1BUJ2_9STRA (V-type proton ATPase subunit G n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BUJ2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.420e-11
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 
Query:   69 STQIQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVCHIVYVVP 389
            S+ IQEL+AAET+AS IVAEAR  R +RMK+AK +A+ L +A+R EK+  + A +  + GS G  S  L A+T+ +I  M   +++N +   D+L+ + C +   VP
Sbjct:    4 SSGIQELMAAETRASQIVAEARIGRGERMKQAKSDAQELIDAYRGEKQEEFNARVLTAGGSGGSYSAKLQAETNQEIKMMEMQFTQNAQKAIDVLLSKCCEVDLSVP 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Match: B5Y573_PHATC (V-type proton ATPase subunit G n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y573_PHATC)

HSP 1 Score: 67.0 bits (162), Expect = 2.870e-11
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 3 
Query:   60 ATMSTQIQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEAAYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEVCHIVYVVP 389
            A   T IQEL+AAET+AS IVAEAR  R  RMK+AK EA+ L +++RAEK+  +        GS G  +  L A+T+ ++  M G + +N +   D+L+ + C +   VP
Sbjct:    2 AESGTGIQELMAAETRASQIVAEARIGRGDRMKQAKVEAQQLIDSYRAEKQEEFNNMALSQGGSEGNAAAALQAETNKEVQAMEGLFQKNVQGAVDVLLSKCCEVSLEVP 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1261.5269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJS2_ECTSI2.950e-6088.52V-type proton ATPase subunit G n=1 Tax=Ectocarpus ... [more]
A0A6H5KHJ3_9PHAE7.540e-6089.08V-type proton ATPase subunit G n=1 Tax=Ectocarpus ... [more]
A0A7S2UYL7_9STRA1.500e-1650.00V-type proton ATPase subunit G n=1 Tax=Fibrocapsa ... [more]
A0A6V2B9Z3_9STRA3.320e-1346.15V-type proton ATPase subunit G n=1 Tax=Ditylum bri... [more]
A0A7S0ARJ4_9STRA1.880e-1242.45V-type proton ATPase subunit G n=1 Tax=Minutocellu... [more]
A0A7S1VIJ7_9STRA1.970e-1242.31V-type proton ATPase subunit G n=1 Tax=Grammatopho... [more]
A0A8K1CF74_PYTOL7.740e-1242.20Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485L8X0_9STRA1.170e-1143.24V-type proton ATPase subunit G n=3 Tax=Aphanomyces... [more]
A0A7S1BUJ2_9STRA1.420e-1142.06V-type proton ATPase subunit G n=1 Tax=Corethron h... [more]
B5Y573_PHATC2.870e-1140.91V-type proton ATPase subunit G n=2 Tax=Phaeodactyl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1261contigM-pyrifera_M_contig1261:9055..13266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue4.4e-48
Seed eggNOG ortholog2880.D7FJS2
Preferred nameATP6V1G1
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K01046,ko:K02152,ko:K14388
KEGG TC2.A.21.5.3,2.A.21.5.4,2.A.21.5.5,3.A.2.2
KEGG ReactionR02250,R02687
KEGG Pathwayko00190,ko00561,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map00561,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00098,M00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000166,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0001700,GO:0001763,GO:0002009,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007424,GO:0007430,GO:0008021,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008286,GO:0008324,GO:0008553,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009888,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010506,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019829,GO:0019899,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030133,GO:0030285,GO:0030554,GO:0030641,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031164,GO:0031224,GO:0031300,GO:0031301,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033572,GO:0034220,GO:0034641,GO:0034654,GO:0035239,GO:0035295,GO:0035639,GO:0036094,GO:0036295,GO:0036296,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045202,GO:0045851,GO:0046034,GO:0046390,GO:0046483,GO:0046916,GO:0046933,GO:0046961,GO:0048518,GO:0048522,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051117,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051716,GO:0055065,GO:0055067,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0055086,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0065007,GO:0065008,GO:0070382,GO:0070482,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071453,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072512,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0097159,GO:0097367,GO:0097458,GO:0097708,GO:0098563,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:0099501,GO:0099503,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton transmembrane transport
EggNOG OGsKOG1772@1,KOG1772@2759
Ec32 ortholog descriptionVacuolar (H )-ATPase G subunit
Ec32 orthologEc-06_010400.1
EC3.1.1.3
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Exons4
Model size499
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1261.5269.1prot_M-pyrifera_M_contig1261.5269.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1261 9129..13201 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.1206002-UTR-M-pyrifera_M_contig1261:9054..91281622815776.1206002-UTR-M-pyrifera_M_contig1261:9054..9128Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1261 9055..9128 -
1692277564.0487747-UTR-M-pyrifera_M_contig1261:9054..91281692277564.0487747-UTR-M-pyrifera_M_contig1261:9054..9128Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1261 9055..9128 -
1622815776.1818871-UTR-M-pyrifera_M_contig1261:13201..132661622815776.1818871-UTR-M-pyrifera_M_contig1261:13201..13266Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1261 13202..13266 -
1692277564.1132984-UTR-M-pyrifera_M_contig1261:13201..132661692277564.1132984-UTR-M-pyrifera_M_contig1261:13201..13266Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1261 13202..13266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.1342788-CDS-M-pyrifera_M_contig1261:9128..92431622815776.1342788-CDS-M-pyrifera_M_contig1261:9128..9243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 9129..9243 -
1692277564.0698595-CDS-M-pyrifera_M_contig1261:9128..92431692277564.0698595-CDS-M-pyrifera_M_contig1261:9128..9243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 9129..9243 -
1622815776.1452906-CDS-M-pyrifera_M_contig1261:10305..103761622815776.1452906-CDS-M-pyrifera_M_contig1261:10305..10376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 10306..10376 -
1692277564.0826385-CDS-M-pyrifera_M_contig1261:10305..103761692277564.0826385-CDS-M-pyrifera_M_contig1261:10305..10376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 10306..10376 -
1622815776.1552637-CDS-M-pyrifera_M_contig1261:11552..116531622815776.1552637-CDS-M-pyrifera_M_contig1261:11552..11653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 11553..11653 -
1692277564.0934796-CDS-M-pyrifera_M_contig1261:11552..116531692277564.0934796-CDS-M-pyrifera_M_contig1261:11552..11653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 11553..11653 -
1622815776.1684086-CDS-M-pyrifera_M_contig1261:13128..132011622815776.1684086-CDS-M-pyrifera_M_contig1261:13128..13201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 13129..13201 -
1692277564.1035087-CDS-M-pyrifera_M_contig1261:13128..132011692277564.1035087-CDS-M-pyrifera_M_contig1261:13128..13201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1261 13129..13201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1261.5269.1

>prot_M-pyrifera_M_contig1261.5269.1 ID=prot_M-pyrifera_M_contig1261.5269.1|Name=mRNA_M-pyrifera_M_contig1261.5269.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MSTQIQELIAAETKASSIVAEARAARSKRMKEAKKEAEALCNAFRAEKEA
AYQASMQKSMGSTGKDSDTLGAQTDLQIHRMTGDYSRNKKTVGDLLVHEV
CHIVYVVPEGLKSREMQQA*
back to top

mRNA from alignment at M-pyrifera_M_contig1261:9055..13266-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1261.5269.1 ID=mRNA_M-pyrifera_M_contig1261.5269.1|Name=mRNA_M-pyrifera_M_contig1261.5269.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4212bp|location=Sequence derived from alignment at M-pyrifera_M_contig1261:9055..13266- (Macrocystis pyrifera P11B4 male)
GTAAGGTAGCACTTAGAGCACTCCGGACATTTGAACAGCTAGATAGACCA
ACACTAACAGCAACCATGTCCACGCAAATCCAGGAGCTTATCGCGGCGGA
GACAAAGGCGTCCTCCATCGTCGCTGAAGCCCGGGCAGGTGAAGAACATT
AGACAAAACCTGGAGAAAATATGCTTCGTCTGCGAGTTCGGTTTTGGCTG
CTGGGAAGGTGTCACGCAGCCAGCGGCACAGAGAGTGGCATGCTTTGCCT
GAATTAGGAGCCAGTCGTCCCCCGTCAGCGCTTGCTTTAGCGAGACCCGC
CTCGACTGGTGCTACATCAGCTACTGGGGTGGAGTTAGTACCCGCCAATT
CACATCAGATTGTTGCTCTTGTCTTCTGCTGCACGTGGCTCTGGTATGAT
GTAGGCCGAGATAGGCACAGACCCCGAGTTGCTTGACTTGCTTTTATTGT
GAGGCTTTTACGTAGACTTCGCAGAGAAGCGAGGGAGAACCGACCGAACT
GGTTCATCTCTTGGGCCTACGCTATACCCGACCGTCCCATCGAAAGACAA
GCCGGCCCACGAGCGCGCACGTTTGTCTCCCCCTGTCCGCATGCACCGAA
GCAACCTTGGCTTCGTTCAGTGGGCTGTTATTTCAGTCGCTTTAGGAGGC
GAAAGGGCCCCATTTTTCTCAAAGCTCGACGAAGGCCCCCCTATTCCCAC
GCGAACGCACTTCCGAAGTGCTCTCTGACCGCTCGACACCACTGCGCAAG
CTAGACACCCCCACCCCCACCGCCCTCTCTCCATCGAGCATGCGTGGCCT
CTTGGCGTGGTATCTTGGGGGGTTCTGGTCGTGGAATCCCGAGCACTCGG
TCGCCCCTCCGCTCAGCCCACAACTGGCAAAAAAAAGTAGACGATTCTCG
AAGAGCGCCCCTTTGTGGTATTTTGGGTTGTTGTGGTCTCTGACCCCTTC
AGGGTGACGTTCCTCCTCCCTCGACCAAGAGAGTAGATATGTATAGGGTA
TGGATTGTGTTTTTACAGGAGTTTTCGTGTGCACGGCGTGCGTTGTAAGT
TGCGAGACGGCTACGTATGTGCTCTCGGTGGCGGTGAGGGAGGGCAGCGC
CTGCTGAAAATGTTATCTGGTAACTGGTACCCTGGTAGACCTGAGTGACC
CTATCAATACTCGTGGGGCAAGCTGGGGCAAGCAATTTTCGTACGAAGTA
TTATTATTAAGAATAGGGCGCGCCCACTCCTGTGTTGATACGACGTACCA
GCGTGATGTAATGGGCCTGCCAGTGTATTGTTTAGATACGCATAATACGC
GTATGATAGTACCCTCTCAACCCCTGGGTAGTGGGTACATCGGGAACACT
CAACATTGATCATGGAACAGCGTTTTTCCTCCAAGACCGCGGTTAGCGTA
ACATTAGAGAGAAACGAAACATAGAGCAGTAGGACAACCTTCAAACGACA
TGCCCTTCTACAGCCAACTGCCGTAATTGAAATATTAATATTAATAGTAA
TTTACCAGGTAGCTGTAACCCTCCGGTTTCCCCTTCCCTCTCTGCGGCAG
TAGTACGCCATTTTATCCGCCTTGACGATTACACCTTTTCGTGTCCCCTG
TCCCTTGTCCCAGCCCGGTCAAAGCGCATGAAAGAGGCCAAGAAGGAAGC
AGAGGCGTTGTGCAACGCCTTCCGCGCGGAGAAGGAAGCCGCATACCAAG
CCAGCATGCAGAAGGTCAGTGCCCCGTGTGCTGCCCCCCCCCCACCCCCC
CGCCCTGATGCTCAAGTTTGCTCGGGGAAAACGCGCTCGAAAAATAGCAT
TCGGGCAAGGTTGGCTCGCCAATGGCGCTCAGCGGGTTTACAATGCGGCA
GAACCGGGGGCACCGCAGTGTGTTGTAGCATGCGACGCAACGTGTGACGG
GTTCTTCGCGTGGATATGCTGCAAGTGCTGCGTTGTGGCGCTTGTTTTTT
TTTCGTGTGTCGCCGGCTGTGCTGAATGCATGGTGTTTGATGGCAGAGAA
CGTTTTTGTATATGACACGTATATGGGGTGTTCTTCCGAGCGAGCGAACA
GCCAGCAAACGCTGCCAACGCCACCGTCTCCTGTGCAGGGTAATATCGAC
GTCGAGCCCATTTTTTTTGTCGGCCCGGCGCAGCAGTCGAACGCGATCTG
CCAATTCAGTGCAGCAAAATTGACAACGCGCTTGCGTGCGGGCGGGCGCC
CAACCCAGCCAATGAGGAATCCGAACCCTTAACCTTCCGTGTATGATTGT
TGCGCCTCCACCGTATTGCCGCGCTTCCACCGTTACCTGCCGCCCCCTCT
CGCCAACAGCACCATTGTTGCGGTCGGTCGGTAACTCTGTTGTTACGCGT
AAACCTCTTCTTTACTTCCTATGCTTCGTATCTGGGAAGCATTTTATTCA
GAACCTCGTATATCGTGGGTAAACATACGGAGATATATAGATATTTCAGG
TCCATCGTGATTTCTGATCATATGTTCCCCTGTTGAAGTATTAACGGTTA
CAATGTGCGCACCGCCGTTTCGATGACTTAACTATTAATACGTACTTGGA
TTTTTTCTTGTTGGACCATGGTTTTGCAGTCGTATTGCATGCACACCGCT
TTCAGGGGTGAGCTGCTTGGAATATTTGGGTTCCACCATGCTTATTGCAG
TGAATCTAAAGGATTAACTCGCATTTCGCCTGTCTTGAAACCTTGACGCA
CGAACGATCCCAAACCGACGCTGAACCGTCACACCGTTCATTCGTGATGG
ACGTGCAGTTTCCTTTTTGTTTGTCGTTTATGTTTCATTTAACAGACAAA
AACACCTCAGCTATGTGATCGAGAAATAGGATTTCGTCTAAACCCGTCTT
AAGCTATTTCCTGACTCGCGCGTTTTTTTTGTTCACGCAGTCGATGGGAT
CGACAGGGAAGGACTCGGACACCCTCGGAGCACAGACCGACTTGCAAATC
CACCGGATGACGTGAGTTGGTCCCGCCTTTTTCATGTATATAATTTGCCA
CTTTTGAAGTGTAGCAGTCGGGCTACGAGCAAAAGAACGAGTAGGTTGGT
TTTGCAATTTCCGTTTGCTGCGTTTGTAGCAGTCGAGCTACGAACAAGTA
CGATTAGGTTGGTTCTGCTAATGCGTTGATGCTTTTGTATCAATCGAGCC
ACAAACTACTGTACAATCGAGTAGGTCTGTAGGGATATCATATCAGTGCA
CTGTCGGCTGCTAGCCTAAAATCAAGCGTTAACGACCGCAGGGGGCACGA
GCGACTATGATATATACGAGGACGCAGATATGTAGGGCTATCGACGTCGA
AAACAAGAACAATGGATCGCCGAGGTTCTATTTTACGACTGATCAATGCC
GTACATGGCGTGATGTACAGCTGCAGTTTTCACACATGAGCAGGTCACCA
GGTCTTTTTTTCTGCTGCCCTCTTATGTGTTGTTGTCCTAATGTCGTGTG
TGTGTTCACCTCTCTTCACGTTACACAACGATACGCTGCCGAGCATGCAC
GGCATACCCGAGCGTCTTCGCCAATCGTGTCTACGACTAACGCAAGAAGA
AAGTCGGGGAGGGGGGGGGGGTGTACTCGATGTCATGCATGGCCGTAGGT
AAACGTATGACCATAAATAAACGCTCGCATCCCTACCCTTCCTTTCGCTC
TCTCTGAAGCCCTCCCCCGTATGGTACCTTGATCTTACGCTCTCTCTGTG
CTCTCTCTCAACCTTTAAAAAAATTAATTACCGCACCCACGTTTTGAAGA
CAAAACACACGACTTGGAACTGGAGTAGGACATATTTTGCAGTTGTTAAA
AGAGCCTCTCTTTCTCCTCCCTTCTTATGGTGAACCTCTCCTTCTTTTTT
TCTTCCTTCCTCCCTCGCTATTAACCAACATGTCTCCCTATTCACCCCCC
TCATTAAGGTGGCTCTCTTTGTAGTCATCTATCTTCCTTTCTCGCTTTTT
AATTTATGTCTGTCTCTCCTTCCTCTCTCTTTCTCGCTCTCCGCCACCTT
TTTTTGGGGGCTTACTCCGTCAGTGGCGACTACTCCCGCAACAAGAAGAC
AGTGGGCGACCTCCTGGTGCACGAAGTGTGCCACATCGTCTACGTCGTAC
CGGAAGGCCTTAAGTCGCGCGAGATGCAGCAGGCGTGATGGCGTCACACC
CCTAAAGGACGATGTCATCTATCTTTTGTATTGTTGGGTTTTGAGGAACG
AGGGGAGGAGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1261:9055..13266-

>mRNA_M-pyrifera_M_contig1261.5269.1 ID=mRNA_M-pyrifera_M_contig1261.5269.1|Name=mRNA_M-pyrifera_M_contig1261.5269.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig1261:9055..13266- (Macrocystis pyrifera P11B4 male)
ATGTCCACGCAAATCCAGGAGCTTATCGCGGCGGAGACAAAGGCGTCCTC
CATCGTCGCTGAAGCCCGGGCAGATGTCCACGCAAATCCAGGAGCTTATC
GCGGCGGAGACAAAGGCGTCCTCCATCGTCGCTGAAGCCCGGGCAGCCCG
GTCAAAGCGCATGAAAGAGGCCAAGAAGGAAGCAGAGGCGTTGTGCAACG
CCTTCCGCGCGGAGAAGGAAGCCGCATACCAAGCCAGCATGCAGAAGCCC
GGTCAAAGCGCATGAAAGAGGCCAAGAAGGAAGCAGAGGCGTTGTGCAAC
GCCTTCCGCGCGGAGAAGGAAGCCGCATACCAAGCCAGCATGCAGAAGTC
GATGGGATCGACAGGGAAGGACTCGGACACCCTCGGAGCACAGACCGACT
TGCAAATCCACCGGATGACTCGATGGGATCGACAGGGAAGGACTCGGACA
CCCTCGGAGCACAGACCGACTTGCAAATCCACCGGATGACTGGCGACTAC
TCCCGCAACAAGAAGACAGTGGGCGACCTCCTGGTGCACGAAGTGTGCCA
CATCGTCTACGTCGTACCGGAAGGCCTTAAGTCGCGCGAGATGCAGCAGG
CGTGATGGCGACTACTCCCGCAACAAGAAGACAGTGGGCGACCTCCTGGT
GCACGAAGTGTGCCACATCGTCTACGTCGTACCGGAAGGCCTTAAGTCGC
GCGAGATGCAGCAGGCGTGA
back to top