mRNA_M-pyrifera_M_contig126070.5267.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126070.5267.1
Unique NamemRNA_M-pyrifera_M_contig126070.5267.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: A0A0C2F561_9BILA (Cation efflux family protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2F561_9BILA)

HSP 1 Score: 102 bits (253), Expect = 1.800e-24
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 1
Query:   52 ATVGSKLVLFVLAKIAATRSSTHLPSLRALALDHLNDCASNTLAL-CALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            ATV  K  LF++ +   T      PS+R LA+DH NDC SNT+AL CA L +     L   DP+ AIL+ ++ILY W   G E+  KL G +A P+ ++ +++    HD R+  +DTV   H G + LVE+H+ L  D PL+ AHD+ E
Sbjct:    3 ATVVVKFTLFMICQKYKTD-----PSIRVLAMDHRNDCLSNTVALACAWLATMFWYYL---DPIGAILVSIYILYTWVNTGWEHLSKLSGKSAKPEFINRIIKVCIDHDPRISHLDTVYVYHFGTKFLVEVHIVLDEDMPLKVAHDISE 143          
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: A0A0K0DM29_ANGCA (ZT_dimer domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0DM29_ANGCA)

HSP 1 Score: 100 bits (250), Expect = 5.200e-23
Identity = 60/155 (38.71%), Postives = 89/155 (57.42%), Query Frame = 1
Query:   31 VSFGVLGATVGSKLVLFVLAKIAATRSSTHLPSLRALALDHLNDCASNTLALCALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            V+  ++ ATV  K +LF + +          PS++ LA+DH NDC SNT+AL    L +L    L  DP+  IL+ L+ILY W   G E+  KL G +A P+ ++ +++    HD R+  +DTV   H G + LVE+H+ L  D PL+ AHD+ E
Sbjct:   91 VTVSIMVATVAVKFILFCICQKYKLD-----PSIKVLAMDHRNDCLSNTVALACAWLGKLYWYYL--DPIGGILVSLYILYTWVNTGWEHLSKLSGKSAKPEFINRIIKVCIDHDPRISHLDTVYVYHFGTKFLVEVHIVLDEDMPLKVAHDISE 238          
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: A0A3P7I8A5_ANGCS (ZT_dimer domain-containing protein n=2 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A3P7I8A5_ANGCS)

HSP 1 Score: 100 bits (248), Expect = 1.010e-21
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  124 PSLRALALDHLNDCASNTLALCALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            PS++ LA+DH NDC SNT+AL    L +L    L  DP+  IL+ L+ILY W   G E+  KL G +A P+ ++ +++    HD R+  +DTV   H G + LVE+H+ L  D PL+ AHD+ E
Sbjct:  288 PSIKVLAMDHRNDCLSNTVALACAWLGKLYWYYL--DPIGGILVSLYILYTWVNTGWEHLSKLSGKSAKPEFINRIIKVCIDHDPRISHLDTVYVYHFGTKFLVEVHIVLDEDMPLKVAHDISE 409          
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: A0A016UK99_9BILA (ZT_dimer domain-containing protein n=3 Tax=Ancylostoma TaxID=29169 RepID=A0A016UK99_9BILA)

HSP 1 Score: 100 bits (248), Expect = 1.910e-21
Identity = 59/148 (39.86%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   52 ATVGSKLVLFVLAKIAATRSSTHLPSLRALALDHLNDCASNTLALCALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            ATV  K  LF++ +   T      PS+R LA+DH NDC SNT+AL    L+  ++    LDP+ AIL+ ++ILY W   G E+  KL G +A P+ ++ +++    HD R+  +DTV   H G + LVE+H+ L  + PL+ AHD+ E
Sbjct:  433 ATVVVKFTLFMICQKYKTD-----PSIRVLAMDHRNDCLSNTVALACAWLA--TTFWYYLDPIGAILVSIYILYTWVNTGWEHLSKLSGKSAKPEFINRIIKVCIDHDPRISHLDTVYVYHFGTKFLVEVHIVLDENMPLKVAHDISE 573          
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: W2SWQ1_NECAM (Cation diffusion facilitator family transporter n=1 Tax=Necator americanus TaxID=51031 RepID=W2SWQ1_NECAM)

HSP 1 Score: 98.6 bits (244), Expect = 2.590e-21
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  124 PSLRALALDHLNDCASNTLALCALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            PS++ LA+DH NDC SNT+AL    L+ L       DP+ AIL+ ++ILY W   G E+  KL G +A P+ ++ +++    HD R+  +DTV   H G + LVE+H+ L  D PL+ AHD+ E
Sbjct:  234 PSIQVLAMDHRNDCLSNTVALACAWLATLFWYYF--DPIGAILVSIYILYTWVNTGWEHLSKLSGKSAKPEFINRIIKVCIDHDPRISHLDTVYVYHFGTKFLVEVHIVLDEDMPLKVAHDISE 355          
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: A0A0D8XGQ9_DICVI (Cation diffusion facilitator family transporter n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XGQ9_DICVI)

HSP 1 Score: 98.6 bits (244), Expect = 6.860e-21
Identity = 59/158 (37.34%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   22 VDGVSFGVLGATVGSKLVLFVLAKIAATRSSTHLPSLRALALDHLNDCASNTLALCALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            V  V+  ++ ATV  KL LF + +   +      PS+  LA+DH NDC SNT+AL    L ++    L  DP+ AIL+  +ILY W   G ++  KL G +A+P+ ++ +++    HD+R+  +DTV   H G + LVE+H+ L  + PL+ AHD+ E
Sbjct:  425 VSAVTVSIMVATVAVKLTLFCICQKFKSD-----PSIVVLAMDHRNDCLSNTVALACAWLGKMYWYYL--DPIGAILVSAYILYTWVHTGWDHLSKLSGRSANPEFINRIIKVCIDHDSRISHLDTVYVYHFGTKFLVEVHIVLDEEMPLKIAHDISE 575          
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: A0A1Y1WD32_9FUNG (ZT_dimer domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WD32_9FUNG)

HSP 1 Score: 95.9 bits (237), Expect = 2.020e-20
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  118 HLPSLRALALDHLNDCASNTLALCALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            H P  R  A DHLND   N+  L   LL   +  +  +DPL  +L+GL+I+Y W+ E ++ A+ L+GA A P  +++L   A  HD R+  VDTV+A H+G+   VEI + +   TPL  +HDVGE
Sbjct:  209 HHPEARIFATDHLNDLILNSFGLAMALLG--THVVWYIDPLGGLLVGLFIMYSWASEAIDQAKLLIGATAEPQFLNQLTYMAMTHDPRIQFVDTVRAYHVGEEKYVEIDIVMDETTPLWESHDVGE 332          
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: A0A2H2IHQ2_CAEJA (ZT_dimer domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IHQ2_CAEJA)

HSP 1 Score: 95.1 bits (235), Expect = 3.180e-20
Identity = 60/156 (38.46%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   31 VSFGVLGATVGSKLVLFVLAKIAATRSSTHLPSLRALALDHLNDCASNTLAL-CALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            VS  ++ ATV  KL L++  K          PS+  LA+DH NDC SNT+AL CA L ++ S      DP+ AI++ ++ILY W Q G E+  KL G +A P+ ++ +++    HD R+  +DTV   H G + LVE+H+ L  +  L+ +HD+ E
Sbjct:  168 VSVVIMVATVLIKLALYLFCKRYKE------PSVNVLAMDHRNDCISNTVALICAWLGTKYSYYF---DPVGAIVVSMYILYTWVQTGREHLAKLSGKSAEPEFINRIIKVCLDHDDRISHIDTVYVYHFGSKFLVEVHIVLDENMILRESHDISE 314          
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: A0A3P7XW07_HAEPC (ZT_dimer domain-containing protein n=2 Tax=Haemonchus placei TaxID=6290 RepID=A0A3P7XW07_HAEPC)

HSP 1 Score: 95.1 bits (235), Expect = 3.520e-20
Identity = 59/147 (40.14%), Postives = 86/147 (58.50%), Query Frame = 1
Query:   58 VGSKLVLFVLAKIAATRSSTHLPSLRALALDHLNDCASNTLAL-CALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            VG+ +V F L  I     S   PS+  LA+DH NDC SNT+AL CA L ++    L   DP+ AIL+ ++ILY W   G ++  KL G +A P+ ++ +++    HD R+  +DTV   H G + LVE+H+ L    PL+ AHD+ E
Sbjct:  166 VGTVVVKFTLFCICQKYKSD--PSITVLAMDHRNDCLSNTVALACAWLGNKFWYYL---DPIGAILVSIYILYTWVTTGWDHLSKLSGKSAKPEFINRIIKVCIDHDPRISHLDTVYVYHFGTKFLVEVHIVLDESMPLKVAHDISE 307          
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Match: A0A2A2KMS3_9BILA (ZT_dimer domain-containing protein n=2 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2KMS3_9BILA)

HSP 1 Score: 95.9 bits (237), Expect = 5.730e-20
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  124 PSLRALALDHLNDCASNTLALCALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVENARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLHLHPDTPLQHAHDVGE 495
            PS+  LA+DH NDC SN++AL    L +       LDP+ AIL+ L+IL+ W + G E   KL G +A PD ++ +++    HD R+ A+DTV   H G + LVE+H+ L  + PL+ AHD+ E
Sbjct:  436 PSIAVLAMDHRNDCVSNSVALACAWLGK--KFWYYLDPIGAILVSLYILFTWVKTGREYMIKLSGRSAKPDFINRIIKVCIDHDERISALDTVFVYHYGTKFLVEVHIVLDENMPLKIAHDISE 557          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126070.5267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2F561_9BILA1.800e-2441.61Cation efflux family protein n=1 Tax=Ancylostoma d... [more]
A0A0K0DM29_ANGCA5.200e-2338.71ZT_dimer domain-containing protein n=1 Tax=Angiost... [more]
A0A3P7I8A5_ANGCS1.010e-2142.74ZT_dimer domain-containing protein n=2 Tax=Angiost... [more]
A0A016UK99_9BILA1.910e-2139.86ZT_dimer domain-containing protein n=3 Tax=Ancylos... [more]
W2SWQ1_NECAM2.590e-2141.94Cation diffusion facilitator family transporter n=... [more]
A0A0D8XGQ9_DICVI6.860e-2137.34Cation diffusion facilitator family transporter n=... [more]
A0A1Y1WD32_9FUNG2.020e-2041.27ZT_dimer domain-containing protein n=1 Tax=Linderi... [more]
A0A2H2IHQ2_CAEJA3.180e-2038.46ZT_dimer domain-containing protein n=1 Tax=Caenorh... [more]
A0A3P7XW07_HAEPC3.520e-2040.14ZT_dimer domain-containing protein n=2 Tax=Haemonc... [more]
A0A2A2KMS3_9BILA5.730e-2041.94ZT_dimer domain-containing protein n=2 Tax=Diplosc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126070contigM-pyrifera_M_contig126070:4..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score100.1
Seed ortholog evalue1e-18
Seed eggNOG ortholog72019.SARC_01812T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cation transmembrane transporter activity
EggNOG OGs38GMA@33154,COG0053@1,KOG1485@2759
COG Functional cat.P
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815776.0055501-CDS-M-pyrifera_M_contig126070:3..4981622815776.0055501-CDS-M-pyrifera_M_contig126070:3..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126070 4..498 -
1692277563.976311-CDS-M-pyrifera_M_contig126070:3..4981692277563.976311-CDS-M-pyrifera_M_contig126070:3..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126070 4..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126070.5267.1prot_M-pyrifera_M_contig126070.5267.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126070 4..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126070.5267.1

>prot_M-pyrifera_M_contig126070.5267.1 ID=prot_M-pyrifera_M_contig126070.5267.1|Name=mRNA_M-pyrifera_M_contig126070.5267.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
GGGVEVVVDGVSFGVLGATVGSKLVLFVLAKIAATRSSTHLPSLRALALD
HLNDCASNTLALCALLLSQLSSDLLLLDPLFAILLGLWILYGWSQEGVEN
ARKLVGAAASPDVVSELVRFAYFHDTRVIAVDTVQASHLGQRLLVEIHLH
LHPDTPLQHAHDVGE
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mRNA from alignment at M-pyrifera_M_contig126070:4..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126070.5267.1 ID=mRNA_M-pyrifera_M_contig126070.5267.1|Name=mRNA_M-pyrifera_M_contig126070.5267.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig126070:4..498- (Macrocystis pyrifera P11B4 male)
GGTGGTGGGGTGGAGGTGGTGGTGGATGGCGTGAGCTTTGGGGTGTTGGG GGCAACGGTGGGGAGCAAGCTGGTGCTTTTCGTGCTGGCCAAGATAGCTG CCACACGATCCTCCACCCACCTCCCTTCCCTCCGCGCCCTCGCTCTCGAC CACCTCAACGACTGCGCCTCCAACACGCTGGCTCTTTGTGCGCTCCTCTT GTCGCAGCTCTCCTCCGACCTGTTGCTCCTCGATCCTCTCTTCGCCATTC TCCTGGGGCTGTGGATCCTCTACGGATGGTCGCAGGAAGGAGTGGAGAAC GCGAGGAAACTCGTGGGCGCTGCCGCAAGCCCTGACGTGGTCAGTGAACT GGTGCGGTTCGCCTACTTCCACGACACTCGAGTGATCGCCGTTGACACGG TGCAAGCCTCGCATCTCGGCCAACGACTGCTCGTCGAAATCCACCTCCAC CTCCACCCGGACACACCACTGCAACACGCACACGACGTAGGGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126070:4..498-

>mRNA_M-pyrifera_M_contig126070.5267.1 ID=mRNA_M-pyrifera_M_contig126070.5267.1|Name=mRNA_M-pyrifera_M_contig126070.5267.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig126070:4..498- (Macrocystis pyrifera P11B4 male)
GGTGGTGGGGTGGAGGTGGTGGTGGATGGCGTGAGCTTTGGGGTGTTGGG
GGCAACGGTGGGGAGCAAGCTGGTGCTTTTCGTGCTGGCCAAGATAGCTG
CCACACGATCCTCCACCCACCTCCCTTCCCTCCGCGCCCTCGCTCTCGAC
CACCTCAACGACTGCGCCTCCAACACGCTGGCTCTTTGTGCGCTCCTCTT
GTCGCAGCTCTCCTCCGACCTGTTGCTCCTCGATCCTCTCTTCGCCATTC
TCCTGGGGCTGTGGATCCTCTACGGATGGTCGCAGGAAGGAGTGGAGAAC
GCGAGGAAACTCGTGGGCGCTGCCGCAAGCCCTGACGTGGTCAGTGAACT
GGTGCGGTTCGCCTACTTCCACGACACTCGAGTGATCGCCGTTGACACGG
TGCAAGCCTCGCATCTCGGCCAACGACTGCTCGTCGAAATCCACCTCCAC
CTCCACCCGGACACACCACTGCAACACGCACACGACGTAGGGGAGGGTGG
TGGGGTGGAGGTGGTGGTGGATGGCGTGAGCTTTGGGGTGTTGGGGGCAA
CGGTGGGGAGCAAGCTGGTGCTTTTCGTGCTGGCCAAGATAGCTGCCACA
CGATCCTCCACCCACCTCCCTTCCCTCCGCGCCCTCGCTCTCGACCACCT
CAACGACTGCGCCTCCAACACGCTGGCTCTTTGTGCGCTCCTCTTGTCGC
AGCTCTCCTCCGACCTGTTGCTCCTCGATCCTCTCTTCGCCATTCTCCTG
GGGCTGTGGATCCTCTACGGATGGTCGCAGGAAGGAGTGGAGAACGCGAG
GAAACTCGTGGGCGCTGCCGCAAGCCCTGACGTGGTCAGTGAACTGGTGC
GGTTCGCCTACTTCCACGACACTCGAGTGATCGCCGTTGACACGGTGCAA
GCCTCGCATCTCGGCCAACGACTGCTCGTCGAAATCCACCTCCACCTCCA
CCCGGACACACCACTGCAACACGCACACGACGTAGGGGAG
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