mRNA_M-pyrifera_M_contig126054.5261.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126054.5261.1
Unique NamemRNA_M-pyrifera_M_contig126054.5261.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: A0A7D5MKQ4_9BACT (DEAD/DEAH box helicase family protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7D5MKQ4_9BACT)

HSP 1 Score: 100 bits (248), Expect = 1.660e-21
Identity = 59/163 (36.20%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    1 LEGNRSSDYQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESFIYGALDISYQDLVHLAIKEDLLYLEKKGLRWQLVTKSEFTSGHIQSKLDAL---------NSFPEQFNEYYEVHKNLLFEHKPEWISFDLLDINLGERWIPIEIWTAFLNDFF 462
            LE NR   Y KA+IF   ++ ++    + ESL DA++LSLN  N I+  FI   +  S  +++     ++LL+ + +    + VTK EF SG+I  K++A          N FPE   +  E H   L E +P ++  +L+DINLGERWIPI+I+ +F    F
Sbjct:  145 LENNR---YVKADIFQXQVNNIEKTFAKPESLKDAVLLSLNAHNGINVEFIASLMQKSRDEIIREGFDQELLFRDIESQVNRYVTKDEFLSGNIVHKIEAWENLKDTGQRNQFPELTEKDIETHLERLKEVQPVFLKRELIDINLGERWIPIDIYESFAEQLF 304          
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: A0A3D4ISF4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D4ISF4_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 2.200e-21
Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   25 YQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESFIYGALDISYQDLVHLAIKEDLLYLEKKGLRWQLVTKSEFTSGHIQSKLDAL---------NSFPEQFNEYYEVHKNLLFEHKPEWISFDLLDINLGERWIPIEIWTAFLNDFF 462
            Y KA+IF+  ++ V     + ESL DA++LSLN  N ++  FI   +  S  +++     ++LL+   +    Q VTK EF SG+I  K++A          N+FPE  ++  + H   L E +P ++  +L+DINLGERWIPI+I+ +F    F
Sbjct:  514 YVKADIFSKQVNNVQKTFAKPESLKDAVLLSLNAHNGVNVEFISSLMQKSKDEIIREGFDQELLFRNIESRASQYVTKDEFLSGNIVQKIEAWEKIKDSERRNAFPELTDKDIDTHLERLKEVQPVFLKRELIDINLGERWIPIDIYESFAEHLF 668          
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: A0A3D3I680_9BACT (Helicase C-terminal domain-containing protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D3I680_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 2.300e-21
Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   25 YQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESFIYGALDISYQDLVHLAIKEDLLYLEKKGLRWQLVTKSEFTSGHIQSKLDAL---------NSFPEQFNEYYEVHKNLLFEHKPEWISFDLLDINLGERWIPIEIWTAFLNDFF 462
            Y KA+IF+  ++ V     + ESL DA++LSLN  N ++  FI   +  S  +++     ++LL+   +    Q VTK EF SG+I  K++A          N+FPE  ++  + H   L E +P ++  +L+DINLGERWIPI+I+ +F    F
Sbjct:  514 YVKADIFSKQVNNVQKTFAKPESLKDAVLLSLNAHNGVNVEFISSLMQKSKDEIIREGFDQELLFRNIESRASQYVTKDEFLSGNIVQKIEAWEKIKDSERRNAFPELTDKDIDTHLERLKEVQPVFLKRELIDINLGERWIPIDIYESFAEHLF 668          
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: A0A7Y4R3C9_9BACT (N-6 DNA methylase n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4R3C9_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 5.250e-18
Identity = 51/164 (31.10%), Postives = 92/164 (56.10%), Query Frame = 1
Query:    1 LEGNRSSDYQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESFIYGALDISYQDLVHLAIKEDLLYLEKKGLRWQLVTKSEFTSGHIQSKL---DALNSFPEQFNEYYEV-------HKNLLFEHKPEWISFDLLDINLGERWIPIEIWTAFLNDFF 462
            LE   +S Y KA+IF   ++       R +SL DA+++SLN  N ++ ++I   +   +++++   + E+L++ +        VTK +F SG+I  KL   + L   P++ N+Y ++       H   L E +P ++  +L+DIN+GERWIP +I+ +F +D F
Sbjct:  508 LEKQVNSHYVKADIFTQQVNNKQAVVTRPDSLKDALLMSLNAHNGVNIAYIASLMVKEHKEVIREGLDEELIFRDLGSNPEPFVTKDKFLSGNIVQKLTIFEHLQQIPQERNKYLDLTDADIEKHLERLREVQPVFLKRELIDINIGERWIPNQIYESFASDLF 671          
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: A0A6N4EDK7_9RHOO (Site-specific DNA-methyltransferase (adenine-specific) n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A6N4EDK7_9RHOO)

HSP 1 Score: 84.3 bits (207), Expect = 5.420e-16
Identity = 51/163 (31.29%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 LEGNRSSDYQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESFIYGALDISYQDLVHLAIKEDLLYLEKKGLRWQ-LVTKSEFTSGHIQSKLDALN-------SFPEQFNEY-YEVHKNLLFEHKPEWISFDLLDINLGERWIPIEIWTAFLNDFF 462
            LE  +   Y KA+I    ++ V+    + +SL DAI+LSLN  N ID +FI   L+     ++   +  +LL+ + +    +  VT+ EF SG+I  K++ L        S  + F++   + H   L E +P ++  +L+DIN+GERWIP++++ +F    F
Sbjct:  505 LERLQGKSYSKADILGKQVNNVERVHEKPQSLKDAILLSLNAHNGIDMNFISSLLERDKNSVIREGLNTELLFRDPEDRAGESYVTRDEFLSGNIVRKMELLEELGTSGFSSEKSFSQSDVDHHLERLQEVRPAFLKRELIDINIGERWIPMDVYESFAEHLF 667          
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: A0A1H7I9U5_9SPHI (Adenine-specific DNA methylase, N12 class n=1 Tax=Olivibacter domesticus TaxID=407022 RepID=A0A1H7I9U5_9SPHI)

HSP 1 Score: 74.3 bits (181), Expect = 1.670e-12
Identity = 48/160 (30.00%), Postives = 83/160 (51.88%), Query Frame = 1
Query:    1 LEGNRSSDYQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESFIYGALDISYQDLV-HLAIKEDLLYLEKKGLRWQLVTKSEFTSGHIQSKLDALNSFPEQFNEYYEVHKNL--LFEHKPEWISFDLLDINLGERWIPIEIWTAFLNDFFSTD 471
            LE      Y  A+I    + +V  + ++++S  +A+ + LN+F  +D  FI    + + +D + HL    D +Y+     RW+  T  E+ SG++  KL    S  +Q  E  ++ ++   +   +PE + F+LLD NLGERWIP E +  +L +   TD
Sbjct:  664 LERREEEKYVTADIVTTPILEVQ-EALQLDSPLEALAVCLNRFGRVDIPFIASTCNQTEEDTIEHLG---DKVYVNPATNRWE--TNDEYLSGNVVEKLSLAESVLKQHPEDIQLRRSYEAIKGSQPEKVPFELLDFNLGERWIPTEYYERYLKELLDTD 817          
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: A0A1I2ZJ40_9SPHI (Helicase conserved C-terminal domain-containing protein n=1 Tax=Pedobacter insulae TaxID=414048 RepID=A0A1I2ZJ40_9SPHI)

HSP 1 Score: 73.6 bits (179), Expect = 3.100e-12
Identity = 48/159 (30.19%), Postives = 80/159 (50.31%), Query Frame = 1
Query:    1 LEGNRSSDYQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESFIYGALDISYQDLVHLAIKEDLLYLEKKGLRWQLVTKSEFTSGHIQSKLDALNSFPEQFNEYYEVHKNL--LFEHKPEWISFDLLDINLGERWIPIEIWTAFLNDFFSTD 471
            LE      + KA+I   ++ +   + V  + + +A+  SLN    +D  FI  AL+    + +      + +YL      W+  T  EF SG++ +KL    + PEQ  + Y+  +++  L + +PE I F+LLD NLGERWIP+  +  F  + F  D
Sbjct:  658 LERREGEHFVKADILIQSVQKTKERFVTTDPV-EALAHSLNDTGRVDLEFISAALETDRDEAI--TGLGNHIYLNPLSNTWE--TADEFLSGNVVAKLKQAENLPEQVLQNYQYGRSVEALRKVQPEAIPFELLDFNLGERWIPLSFYERFATELFEQD 811          
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: A0A1Q3S3Z3_9FLAO (DNA methylase n=1 Tax=Flavobacterium sp. 40-81 TaxID=1896169 RepID=A0A1Q3S3Z3_9FLAO)

HSP 1 Score: 73.2 bits (178), Expect = 4.220e-12
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   79 VRVESLSDAIVLSLNQFNNIDESFIYGALDISYQDLVHLAIKEDLLYLEKKGLRWQLVTKSEFTSGHIQSKLDALNSFPEQFNEYYEVHKNL--LFEHKPEWISFDLLDINLGERWIPIEIWTAFLNDFF 462
            ++ E   +A+  SLN    +D +FI  A+ IS ++ +  A+ ++ +YL   G  W+  T+ ++ SG++  KL  +    E  +E  +  ++L  L + +PE I FDLLD NLGERWIP   +  F  + F
Sbjct:  685 LKTEDPLEALARSLNDLGYVDIAFISSAMGISDEESI--AVLDERIYLNPNGDIWE--TRDKYLSGNVHQKLSDVKKALEAQSENGQYKRSLDALAKIQPERIPFDLLDFNLGERWIPESYYNQFATELF 810          
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: A0A1G7GJE7_9SPHI (Type III restriction enzyme, res subunit n=1 Tax=Mucilaginibacter pineti TaxID=1391627 RepID=A0A1G7GJE7_9SPHI)

HSP 1 Score: 72.4 bits (176), Expect = 7.820e-12
Identity = 51/160 (31.87%), Postives = 83/160 (51.88%), Query Frame = 1
Query:    1 LEGNRSSDYQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESFIYGALDISY-QDLVHLAIKEDLLYLEKKGLRWQLVTKSEFTSGHIQSKLDALNSFPEQFNEYYEVHKNL--LFEHKPEWISFDLLDINLGERWIPIEIWTAFLNDFFSTD 471
            LE   ++ Y +++IF+  L++ +    R E   +A+   LN    +D +FI    + S  Q +V L    D +Y      RW+  TK +F SG++ +KL+ +    E+     +  ++L  L   +PE I F+LLD NLGERW+P+  +  F  D F TD
Sbjct:  660 LERRENNTYVQSDIFSVNLNRNELAYFRTEEPLEALAHCLNIKGYVDTAFIAEITNTSEPQAIVGLG---DHIYQNPIHNRWE--TKDQFLSGNVVAKLEQVTIIAEEQPAILQFQRSLEALAGVQPEKIPFELLDFNLGERWMPVSYFERFAKDLFETD 814          
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Match: UPI0006463526 (hypothetical protein n=1 Tax=Alistipes sp. ZOR0009 TaxID=1339253 RepID=UPI0006463526)

HSP 1 Score: 71.6 bits (174), Expect = 1.440e-11
Identity = 48/159 (30.19%), Postives = 87/159 (54.72%), Query Frame = 1
Query:    1 LEGNRSSDYQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESFIYGALDISYQDLVHLAIKEDL---LYLEKKGLRWQLVTKSEFTSGHIQSKLDALNSFPEQFNEYYEVHKNLLFEHK--PEWISFDLLDINLGERWIPIEIWTAFLNDFF 462
            LE ++   + KA+IF   +    +++ +VES +DA++ SLN+F  +D ++I   L    +     ++K+DL   +    +   ++L  + +F SG+I  K+D+ N+F  +   +    ++L    K  PE I F++LD NLGERWIP + ++ F    F
Sbjct:  533 LENSKDQKFVKADIFEKPV--AFSKESKVESANDALIKSLNKFGTVDLNYITSILQKEEK-----SVKDDLKDLILFNPENSNYEL--RDKFLSGNIIEKIDSANNFLLKNPNHLPAQESLSELKKVIPERIPFEVLDFNLGERWIPNKYYSDFATKLF 682          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126054.5261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D5MKQ4_9BACT1.660e-2136.20DEAD/DEAH box helicase family protein n=1 Tax=Cycl... [more]
A0A3D4ISF4_9BACT2.200e-2135.48Uncharacterized protein (Fragment) n=1 Tax=Cytopha... [more]
A0A3D3I680_9BACT2.300e-2135.48Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7Y4R3C9_9BACT5.250e-1831.10N-6 DNA methylase n=1 Tax=Cyclobacteriaceae bacter... [more]
A0A6N4EDK7_9RHOO5.420e-1631.29Site-specific DNA-methyltransferase (adenine-speci... [more]
A0A1H7I9U5_9SPHI1.670e-1230.00Adenine-specific DNA methylase, N12 class n=1 Tax=... [more]
A0A1I2ZJ40_9SPHI3.100e-1230.19Helicase conserved C-terminal domain-containing pr... [more]
A0A1Q3S3Z3_9FLAO4.220e-1233.08DNA methylase n=1 Tax=Flavobacterium sp. 40-81 Tax... [more]
A0A1G7GJE7_9SPHI7.820e-1231.88Type III restriction enzyme, res subunit n=1 Tax=M... [more]
UPI00064635261.440e-1130.19hypothetical protein n=1 Tax=Alistipes sp. ZOR0009... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126054contigM-pyrifera_M_contig126054:3..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.6
Seed ortholog evalue3.1e-09
Seed eggNOG ortholog761193.Runsl_5965
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Helicase conserved C-terminal domain
EggNOG OGs47MY5@768503,4NEQG@976,COG0553@1,COG0553@2,COG0827@1,COG0827@2,COG4646@1,COG4646@2
COG Functional cat.L
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.7443697-CDS-M-pyrifera_M_contig126054:2..4731622815775.7443697-CDS-M-pyrifera_M_contig126054:2..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126054 3..473 +
1692277563.877224-CDS-M-pyrifera_M_contig126054:2..4731692277563.877224-CDS-M-pyrifera_M_contig126054:2..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126054 3..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126054.5261.1prot_M-pyrifera_M_contig126054.5261.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126054 3..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126054.5261.1

>prot_M-pyrifera_M_contig126054.5261.1 ID=prot_M-pyrifera_M_contig126054.5261.1|Name=mRNA_M-pyrifera_M_contig126054.5261.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
LEGNRSSDYQKAEIFNNALDQVDTQQVRVESLSDAIVLSLNQFNNIDESF
IYGALDISYQDLVHLAIKEDLLYLEKKGLRWQLVTKSEFTSGHIQSKLDA
LNSFPEQFNEYYEVHKNLLFEHKPEWISFDLLDINLGERWIPIEIWTAFL
NDFFSTD
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mRNA from alignment at M-pyrifera_M_contig126054:3..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126054.5261.1 ID=mRNA_M-pyrifera_M_contig126054.5261.1|Name=mRNA_M-pyrifera_M_contig126054.5261.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig126054:3..473+ (Macrocystis pyrifera P11B4 male)
CTAGAAGGGAATAGAAGCAGTGACTATCAAAAGGCTGAGATTTTCAACAA TGCACTTGATCAGGTCGACACTCAGCAAGTCAGGGTTGAATCACTTTCGG ATGCCATTGTACTTTCCTTGAATCAATTCAATAACATTGATGAATCCTTT ATCTACGGAGCGCTGGATATCTCCTACCAGGACCTTGTTCATCTAGCAAT CAAGGAGGACCTGCTCTACTTGGAAAAGAAAGGTTTAAGATGGCAGCTTG TCACCAAATCAGAGTTTACTTCCGGCCATATCCAAAGTAAGCTAGACGCT CTTAATTCATTTCCGGAGCAGTTTAATGAGTATTATGAGGTACACAAAAA CCTGCTTTTTGAACATAAACCGGAATGGATTTCATTCGATCTATTGGACA TCAACCTTGGAGAAAGATGGATTCCAATTGAGATCTGGACTGCGTTTCTG AACGACTTTTTTTCTACAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126054:3..473+

>mRNA_M-pyrifera_M_contig126054.5261.1 ID=mRNA_M-pyrifera_M_contig126054.5261.1|Name=mRNA_M-pyrifera_M_contig126054.5261.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig126054:3..473+ (Macrocystis pyrifera P11B4 male)
CTAGAAGGGAATAGAAGCAGTGACTATCAAAAGGCTGAGATTTTCAACAA
TGCACTTGATCAGGTCGACACTCAGCAAGTCAGGGTTGAATCACTTTCGG
ATGCCATTGTACTTTCCTTGAATCAATTCAATAACATTGATGAATCCTTT
ATCTACGGAGCGCTGGATATCTCCTACCAGGACCTTGTTCATCTAGCAAT
CAAGGAGGACCTGCTCTACTTGGAAAAGAAAGGTTTAAGATGGCAGCTTG
TCACCAAATCAGAGTTTACTTCCGGCCATATCCAAAGTAAGCTAGACGCT
CTTAATTCATTTCCGGAGCAGTTTAATGAGTATTATGAGGTACACAAAAA
CCTGCTTTTTGAACATAAACCGGAATGGATTTCATTCGATCTATTGGACA
TCAACCTTGGAGAAAGATGGATTCCAATTGAGATCTGGACTGCGTTTCTG
AACGACTTTTTTTCTACAGACCTAGAAGGGAATAGAAGCAGTGACTATCA
AAAGGCTGAGATTTTCAACAATGCACTTGATCAGGTCGACACTCAGCAAG
TCAGGGTTGAATCACTTTCGGATGCCATTGTACTTTCCTTGAATCAATTC
AATAACATTGATGAATCCTTTATCTACGGAGCGCTGGATATCTCCTACCA
GGACCTTGTTCATCTAGCAATCAAGGAGGACCTGCTCTACTTGGAAAAGA
AAGGTTTAAGATGGCAGCTTGTCACCAAATCAGAGTTTACTTCCGGCCAT
ATCCAAAGTAAGCTAGACGCTCTTAATTCATTTCCGGAGCAGTTTAATGA
GTATTATGAGGTACACAAAAACCTGCTTTTTGAACATAAACCGGAATGGA
TTTCATTCGATCTATTGGACATCAACCTTGGAGAAAGATGGATTCCAATT
GAGATCTGGACTGCGTTTCTGAACGACTTTTTTTCTACAGAC
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