mRNA_M-pyrifera_M_contig126039.5257.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126039.5257.1
Unique NamemRNA_M-pyrifera_M_contig126039.5257.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126039.5257.1 vs. uniprot
Match: A0A517WBY6_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517WBY6_9PLAN)

HSP 1 Score: 129 bits (324), Expect = 4.890e-35
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 LSIHRTTLLIAGPLGLIAGFYLLVFSGTEENRALANVVRLSPPESWQALPDRPSESVPLQLQTAC 195
            +SIHRTTLLIAGPLGLIAGFYLLVFSGTEENRALANVVRLSPPESWQALPDRPSESVPLQLQTAC
Sbjct:    1 MSIHRTTLLIAGPLGLIAGFYLLVFSGTEENRALANVVRLSPPESWQALPDRPSESVPLQLQTAC 65
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BLAST of mRNA_M-pyrifera_M_contig126039.5257.1 vs. uniprot
Match: A0A518A5G6_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A5G6_9PLAN)

HSP 1 Score: 89.4 bits (220), Expect = 9.250e-20
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 LSIHRTTLLIAGPLGLIAGFYLLVFSGTEENRALANVVRLSPPESWQALPDRPSESVPLQLQTAC 195
            +SIHR+TLLIAGPL LI G YLLVFSGTE+NRA+ANV++LSPPESWQ   ++   + P QLQ  C
Sbjct:    1 MSIHRSTLLIAGPLVLITGIYLLVFSGTEDNRAVANVIQLSPPESWQTPQEKQPTAAPSQLQINC 65
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BLAST of mRNA_M-pyrifera_M_contig126039.5257.1 vs. uniprot
Match: A0A518IBF4_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A518IBF4_9PLAN)

HSP 1 Score: 49.3 bits (116), Expect = 3.590e-5
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   49 IAGFYLLVFSGTEENRALANVVRLSPPESWQALPD----RPSESVPLQLQT 189
            +AGFY L+FSGT+E RA +N VRLS PE++Q+ P+    +PS  +  + +T
Sbjct:    1 MAGFYFLIFSGTQEGRASSNAVRLSAPETFQSAPEIKLLQPSSRLLAECET 51
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126039.5257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A517WBY6_9PLAN4.890e-3598.46Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A0A518A5G6_9PLAN9.250e-2066.15Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A518IBF4_9PLAN3.590e-547.06Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126039contigM-pyrifera_M_contig126039:26..223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.5
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog344747.PM8797T_00177
Hectar predicted targeting categorysignal anchor
EggNOG OGs2ESRG@1,2J33K@203682,33K9V@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.577196-CDS-M-pyrifera_M_contig126039:25..2231622815775.577196-CDS-M-pyrifera_M_contig126039:25..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126039 26..223 -
1692277563.8188882-CDS-M-pyrifera_M_contig126039:25..2231692277563.8188882-CDS-M-pyrifera_M_contig126039:25..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126039 26..223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126039.5257.1prot_M-pyrifera_M_contig126039.5257.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126039 26..223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126039.5257.1

>prot_M-pyrifera_M_contig126039.5257.1 ID=prot_M-pyrifera_M_contig126039.5257.1|Name=mRNA_M-pyrifera_M_contig126039.5257.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
LSIHRTTLLIAGPLGLIAGFYLLVFSGTEENRALANVVRLSPPESWQALP
DRPSESVPLQLQTAC*
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mRNA from alignment at M-pyrifera_M_contig126039:26..223-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126039.5257.1 ID=mRNA_M-pyrifera_M_contig126039.5257.1|Name=mRNA_M-pyrifera_M_contig126039.5257.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig126039:26..223- (Macrocystis pyrifera P11B4 male)
TTGTCTATTCATCGCACTACTCTGCTGATCGCCGGGCCACTTGGTCTGAT
CGCCGGATTTTACCTCCTGGTATTTTCTGGTACAGAGGAGAACCGCGCAC
TAGCTAATGTCGTTCGCCTCAGCCCACCAGAATCCTGGCAAGCACTTCCA
GATAGACCTTCTGAATCAGTACCCTTGCAGCTTCAGACGGCTTGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126039:26..223-

>mRNA_M-pyrifera_M_contig126039.5257.1 ID=mRNA_M-pyrifera_M_contig126039.5257.1|Name=mRNA_M-pyrifera_M_contig126039.5257.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig126039:26..223- (Macrocystis pyrifera P11B4 male)
TTGTCTATTCATCGCACTACTCTGCTGATCGCCGGGCCACTTGGTCTGAT
CGCCGGATTTTACCTCCTGGTATTTTCTGGTACAGAGGAGAACCGCGCAC
TAGCTAATGTCGTTCGCCTCAGCCCACCAGAATCCTGGCAAGCACTTCCA
GATAGACCTTCTGAATCAGTACCCTTGCAGCTTCAGACGGCTTGCTAGTT
GTCTATTCATCGCACTACTCTGCTGATCGCCGGGCCACTTGGTCTGATCG
CCGGATTTTACCTCCTGGTATTTTCTGGTACAGAGGAGAACCGCGCACTA
GCTAATGTCGTTCGCCTCAGCCCACCAGAATCCTGGCAAGCACTTCCAGA
TAGACCTTCTGAATCAGTACCCTTGCAGCTTCAGACGGCTTGCTAG
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