mRNA_M-pyrifera_M_contig126018.5251.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126018.5251.1
Unique NamemRNA_M-pyrifera_M_contig126018.5251.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126018.5251.1 vs. uniprot
Match: A0A1V5YGW2_9BACT (AsmA_2 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5YGW2_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 1.440e-21
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 FNLDGLKHSQTDLELAFHIYGPTFAPRMELEGLPSVGDTIVSGAVEVTSDVMKVVDLPRQILLDLFKIGGGIVGA 225
            FN++G + +Q D+EL FHI GPTF+P  EL GLP +G T+VSGA E+T + MK++D PRQ+ L +F+IGG I+GA
Sbjct:  195 FNVEGFRMTQKDIELGFHITGPTFSPTGELAGLPPMGVTLVSGAAEMTGEAMKLLDTPRQMFLSIFRIGGSILGA 269
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BLAST of mRNA_M-pyrifera_M_contig126018.5251.1 vs. uniprot
Match: A0A1V6EA24_9BACT (AsmA_2 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6EA24_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 4.930e-21
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 FNLDGLKHSQTDLELAFHIYGPTFAPRMELEGLPSVGDTIVSGAVEVTSDVMKVVDLPRQILLDLFKIGGGIVGA 225
            FN++G + +Q D+EL FHI GPTF+P  EL GLP +G T+VSGA E+T + MK++D PRQ+ L +F+IGG I+GA
Sbjct:  294 FNVEGFRMTQKDIELGFHITGPTFSPTGELAGLPPMGVTLVSGAAEMTGEAMKLLDTPRQMFLSIFRIGGSILGA 368
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BLAST of mRNA_M-pyrifera_M_contig126018.5251.1 vs. uniprot
Match: A0A7C4Z0M8_9BACT (AsmA_2 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4Z0M8_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 9.770e-20
Identity = 40/75 (53.33%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 FNLDGLKHSQTDLELAFHIYGPTFAPRMELEGLPSVGDTIVSGAVEVTSDVMKVVDLPRQILLDLFKIGGGIVGA 225
            FN+ G +  QT ++L F + GP+F PR E++GLP +G T+VSGA E+TS+ ++V+D+PR+ILLDL ++GGGIVG+
Sbjct:  916 FNIRGHQIIQTPIQLGFRLQGPSFKPRGEVKGLPPIGVTLVSGAAEITSEAVRVIDIPRRILLDLLRLGGGIVGS 990
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BLAST of mRNA_M-pyrifera_M_contig126018.5251.1 vs. uniprot
Match: A0A2A5D512_9BACT (AsmA_2 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5D512_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 6.320e-19
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 FNLDGLKHSQTDLELAFHIYGPTFAPRMELEGLPSVGDTIVSGAVEVTSDVMKVVDLPRQILLDLFKIGGGIVGAGGKK 237
            FN+ G K +Q D+ELAF+I GPTF PR +L  LP    T+VSGA+E+T + + ++D PR+IL+DL KIGGGI+ +G  K
Sbjct:  906 FNIQGHKLAQRDIELAFNIGGPTFNPRGQLAELPPASVTLVSGALEMTREAINIIDFPRKILVDLVKIGGGIIASGSNK 984
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BLAST of mRNA_M-pyrifera_M_contig126018.5251.1 vs. uniprot
Match: A0A847G9Y1_9BACT (AsmA-like C-terminal region-containing protein n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847G9Y1_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 7.650e-18
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 FNLDGLKHSQTDLELAFHIYGPTFAPRMELEGLPSVGDTIVSGAVEVTSDVMKVVDLPRQILLDLFKIGGGIVGA 225
            FNL G + +Q +++L F I GP F P  +L GLP +G T+VSGA E+TS+ +K++DLPRQ+ + L K GGGI+GA
Sbjct:  941 FNLQGHRLTQQNIDLGFRITGPAFKPTSQLAGLPPMGVTLVSGAAEMTSETVKIIDLPRQLFMALIKTGGGILGA 1015
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BLAST of mRNA_M-pyrifera_M_contig126018.5251.1 vs. uniprot
Match: A0A7C3SXP3_9BACT (AsmA_2 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3SXP3_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 6.770e-17
Identity = 33/75 (44.00%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 FNLDGLKHSQTDLELAFHIYGPTFAPRMELEGLPSVGDTIVSGAVEVTSDVMKVVDLPRQILLDLFKIGGGIVGA 225
            FN+ G +  Q  ++L F ++GP+F+P+ +++ LP +G T+VSGA E+T++  +V+D+PR+IL+DL K+GGG++G+
Sbjct:  932 FNIRGHQIIQNPIQLGFRVHGPSFSPKGQVKNLPPLGITLVSGAAEITTEAFRVIDIPRKILVDLLKLGGGVLGS 1006
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BLAST of mRNA_M-pyrifera_M_contig126018.5251.1 vs. uniprot
Match: A0A7C1CM89_9BACT (AsmA_2 domain-containing protein (Fragment) n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CM89_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 7.810e-5
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 FNLDGLKHSQTDLELAFHIYGPTFAPRMELEGLPSVGDTIV 123
            FN+ G + +Q ++EL FH+ GPTF P  +L GLP +G TIV
Sbjct:  950 FNVQGFRMTQQNIELGFHLTGPTFQPTGQLAGLPPIGVTIV 990
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126018.5251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A1V5YGW2_9BACT1.440e-2156.00AsmA_2 domain-containing protein n=1 Tax=Candidatu... [more]
A0A1V6EA24_9BACT4.930e-2156.00AsmA_2 domain-containing protein n=1 Tax=Candidatu... [more]
A0A7C4Z0M8_9BACT9.770e-2053.33AsmA_2 domain-containing protein n=1 Tax=Candidatu... [more]
A0A2A5D512_9BACT6.320e-1953.16AsmA_2 domain-containing protein n=1 Tax=Candidatu... [more]
A0A847G9Y1_9BACT7.650e-1852.00AsmA-like C-terminal region-containing protein n=1... [more]
A0A7C3SXP3_9BACT6.770e-1744.00AsmA_2 domain-containing protein n=1 Tax=Candidatu... [more]
A0A7C1CM89_9BACT7.810e-551.22AsmA_2 domain-containing protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126018contigM-pyrifera_M_contig126018:2..253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.350999-CDS-M-pyrifera_M_contig126018:1..2531622815775.350999-CDS-M-pyrifera_M_contig126018:1..253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126018 2..253 +
1692277563.7294955-CDS-M-pyrifera_M_contig126018:1..2531692277563.7294955-CDS-M-pyrifera_M_contig126018:1..253Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126018 2..253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126018.5251.1prot_M-pyrifera_M_contig126018.5251.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126018 2..253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126018.5251.1

>prot_M-pyrifera_M_contig126018.5251.1 ID=prot_M-pyrifera_M_contig126018.5251.1|Name=mRNA_M-pyrifera_M_contig126018.5251.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
FNLDGLKHSQTDLELAFHIYGPTFAPRMELEGLPSVGDTIVSGAVEVTSD
VMKVVDLPRQILLDLFKIGGGIVGAGGKKAPSE*
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mRNA from alignment at M-pyrifera_M_contig126018:2..253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126018.5251.1 ID=mRNA_M-pyrifera_M_contig126018.5251.1|Name=mRNA_M-pyrifera_M_contig126018.5251.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig126018:2..253+ (Macrocystis pyrifera P11B4 male)
TTTAACCTGGACGGCCTGAAGCACAGTCAAACCGACCTTGAACTGGCTTT
CCACATTTACGGCCCGACATTCGCTCCCCGCATGGAGCTTGAAGGACTGC
CATCGGTCGGTGATACCATAGTCAGTGGTGCGGTAGAAGTGACAAGCGAC
GTCATGAAAGTAGTCGATCTACCTAGACAAATCCTCCTCGATCTGTTTAA
GATTGGGGGCGGTATCGTCGGAGCCGGGGGCAAAAAAGCACCTTCCGAGT
AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126018:2..253+

>mRNA_M-pyrifera_M_contig126018.5251.1 ID=mRNA_M-pyrifera_M_contig126018.5251.1|Name=mRNA_M-pyrifera_M_contig126018.5251.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig126018:2..253+ (Macrocystis pyrifera P11B4 male)
TTTAACCTGGACGGCCTGAAGCACAGTCAAACCGACCTTGAACTGGCTTT
CCACATTTACGGCCCGACATTCGCTCCCCGCATGGAGCTTGAAGGACTGC
CATCGGTCGGTGATACCATAGTCAGTGGTGCGGTAGAAGTGACAAGCGAC
GTCATGAAAGTAGTCGATCTACCTAGACAAATCCTCCTCGATCTGTTTAA
GATTGGGGGCGGTATCGTCGGAGCCGGGGGCAAAAAAGCACCTTCCGAGT
AATTTAACCTGGACGGCCTGAAGCACAGTCAAACCGACCTTGAACTGGCT
TTCCACATTTACGGCCCGACATTCGCTCCCCGCATGGAGCTTGAAGGACT
GCCATCGGTCGGTGATACCATAGTCAGTGGTGCGGTAGAAGTGACAAGCG
ACGTCATGAAAGTAGTCGATCTACCTAGACAAATCCTCCTCGATCTGTTT
AAGATTGGGGGCGGTATCGTCGGAGCCGGGGGCAAAAAAGCACCTTCCGA
GTAA
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