mRNA_M-pyrifera_M_contig126016.5250.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126016.5250.1
Unique NamemRNA_M-pyrifera_M_contig126016.5250.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126016.5250.1 vs. uniprot
Match: A0A517PWL2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PWL2_9PLAN)

HSP 1 Score: 164 bits (415), Expect = 3.210e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 MLQEQPFDLFLKTLKKDLIRKYFIMGLFALVLLGQFIFNRELDPVSLAMLVLFTADANSEDRLIKALKLLKETSAPQPEPETVETVTS 264
            MLQEQPFDLFLKTLKKDLIRKYFIMGLFALVLLGQFIFNRELDPVSLAMLVLFTADANSEDRLIKALKLLKETSAPQPEPETVETVTS
Sbjct:    1 MLQEQPFDLFLKTLKKDLIRKYFIMGLFALVLLGQFIFNRELDPVSLAMLVLFTADANSEDRLIKALKLLKETSAPQPEPETVETVTS 88
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BLAST of mRNA_M-pyrifera_M_contig126016.5250.1 vs. uniprot
Match: A0A517QDM6_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QDM6_9PLAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.480e-10
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    1 MLQEQPFDLFLKTLKKDLIRKYFIMGLFALVLLGQFIFN-RELDPVSLAMLVLFTADANSEDRLIKALKLLKETSAPQPEPETVETVTS 264
            M Q+   D ++++LKK   R Y ++G+F + L+ Q IF  R  D   +    LF AD   +  LI  L+LLKETS PQ EPET+ETV S
Sbjct:    1 MSQKPTVDQYIESLKKGRKRNYILIGIFIISLMLQEIFTARGTDVFMVIFTTLFIADLICQGHLISVLELLKETSTPQTEPETMETVAS 89
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126016.5250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A517PWL2_9PLAN3.210e-51100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517QDM6_9PLAN1.480e-1043.82Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126016contigM-pyrifera_M_contig126016:166..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.3221295-CDS-M-pyrifera_M_contig126016:165..4321622815775.3221295-CDS-M-pyrifera_M_contig126016:165..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126016 166..432 -
1692277563.712909-CDS-M-pyrifera_M_contig126016:165..4321692277563.712909-CDS-M-pyrifera_M_contig126016:165..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126016 166..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126016.5250.1prot_M-pyrifera_M_contig126016.5250.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126016 166..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126016.5250.1

>prot_M-pyrifera_M_contig126016.5250.1 ID=prot_M-pyrifera_M_contig126016.5250.1|Name=mRNA_M-pyrifera_M_contig126016.5250.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MLQEQPFDLFLKTLKKDLIRKYFIMGLFALVLLGQFIFNRELDPVSLAML
VLFTADANSEDRLIKALKLLKETSAPQPEPETVETVTS*
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mRNA from alignment at M-pyrifera_M_contig126016:166..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126016.5250.1 ID=mRNA_M-pyrifera_M_contig126016.5250.1|Name=mRNA_M-pyrifera_M_contig126016.5250.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig126016:166..432- (Macrocystis pyrifera P11B4 male)
ATGCTTCAGGAACAGCCTTTTGATCTATTTCTCAAGACATTGAAGAAAGA
TCTGATTCGAAAATACTTCATCATGGGGCTGTTCGCCCTGGTTTTACTTG
GCCAGTTTATTTTCAACAGGGAATTAGATCCTGTTTCTCTGGCGATGCTT
GTGCTCTTTACCGCTGATGCCAACAGCGAGGATCGTCTGATCAAAGCCCT
CAAACTGCTCAAAGAAACCTCCGCTCCCCAGCCCGAACCGGAAACTGTGG
AGACCGTCACTTCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126016:166..432-

>mRNA_M-pyrifera_M_contig126016.5250.1 ID=mRNA_M-pyrifera_M_contig126016.5250.1|Name=mRNA_M-pyrifera_M_contig126016.5250.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig126016:166..432- (Macrocystis pyrifera P11B4 male)
ATGCTTCAGGAACAGCCTTTTGATCTATTTCTCAAGACATTGAAGAAAGA
TCTGATTCGAAAATACTTCATCATGGGGCTGTTCGCCCTGGTTTTACTTG
GCCAGTTTATTTTCAACAGGGAATTAGATCCTGTTTCTCTGGCGATGCTT
GTGCTCTTTACCGCTGATGCCAACAGCGAGGATCGTCTGATCAAAGCCCT
CAAACTGCTCAAAGAAACCTCCGCTCCCCAGCCCGAACCGGAAACTGTGG
AGACCGTCACTTCCTGAATGCTTCAGGAACAGCCTTTTGATCTATTTCTC
AAGACATTGAAGAAAGATCTGATTCGAAAATACTTCATCATGGGGCTGTT
CGCCCTGGTTTTACTTGGCCAGTTTATTTTCAACAGGGAATTAGATCCTG
TTTCTCTGGCGATGCTTGTGCTCTTTACCGCTGATGCCAACAGCGAGGAT
CGTCTGATCAAAGCCCTCAAACTGCTCAAAGAAACCTCCGCTCCCCAGCC
CGAACCGGAAACTGTGGAGACCGTCACTTCCTGA
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