mRNA_M-pyrifera_M_contig125992.5247.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125992.5247.1
Unique NamemRNA_M-pyrifera_M_contig125992.5247.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125992.5247.1 vs. uniprot
Match: L8GIC1_ACACA (NlpC/P60 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIC1_ACACA)

HSP 1 Score: 72.4 bits (176), Expect = 1.460e-12
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:    1 VSYAYDALQLTQLVYNEVVVVYEEGVVGADGQLWSYVGALEQLTIINGSYVPYPGYILASQLVDFVAHAPTGPLYLVEADYVPVYGRECHMVGCLPDDMVALAPMGSGLDGVIGDDGWLQFTQPGGT 381
            VSY  D  QL+Q ++ E + + E    G +   W    A  Q  + +G +VPY  Y+  S LV  VA  P+  L +V  +   VYGRECH+ GCLP D+     + + L+G+   DGW +   P GT
Sbjct:    4 VSYEIDENQLSQALFYESIYMLE----GTESDGWVMTEAPMQPNLASGEWVPYRSYMNKSHLVP-VASFPSYNLVVVN-NVAEVYGRECHLTGCLPSDVKLEVVVATFLEGISHSDGWWKIRMPFGT 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125992.5247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
L8GIC1_ACACA1.460e-1236.22NlpC/P60 domain containing protein n=1 Tax=Acantha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125992contigM-pyrifera_M_contig125992:102..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.1913338-CDS-M-pyrifera_M_contig125992:101..4821622815775.1913338-CDS-M-pyrifera_M_contig125992:101..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125992 102..482 -
1692277563.6666539-CDS-M-pyrifera_M_contig125992:101..4821692277563.6666539-CDS-M-pyrifera_M_contig125992:101..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125992 102..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125992.5247.1prot_M-pyrifera_M_contig125992.5247.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125992 102..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125992.5247.1

>prot_M-pyrifera_M_contig125992.5247.1 ID=prot_M-pyrifera_M_contig125992.5247.1|Name=mRNA_M-pyrifera_M_contig125992.5247.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
VSYAYDALQLTQLVYNEVVVVYEEGVVGADGQLWSYVGALEQLTIINGSY
VPYPGYILASQLVDFVAHAPTGPLYLVEADYVPVYGRECHMVGCLPDDMV
ALAPMGSGLDGVIGDDGWLQFTQPGGT
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mRNA from alignment at M-pyrifera_M_contig125992:102..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125992.5247.1 ID=mRNA_M-pyrifera_M_contig125992.5247.1|Name=mRNA_M-pyrifera_M_contig125992.5247.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig125992:102..482- (Macrocystis pyrifera P11B4 male)
GTGTCCTACGCATACGACGCCCTGCAGCTGACGCAGCTCGTCTACAACGA
GGTGGTCGTCGTGTACGAGGAGGGGGTGGTGGGAGCCGACGGCCAACTGT
GGAGCTACGTGGGAGCCCTGGAGCAGCTCACGATCATCAACGGCAGCTAT
GTGCCTTATCCAGGCTACATTCTCGCCTCTCAGTTGGTCGACTTCGTCGC
TCACGCTCCCACCGGGCCCCTCTACCTCGTCGAGGCCGACTACGTCCCCG
TCTACGGCAGAGAATGCCACATGGTCGGCTGTCTGCCCGACGACATGGTT
GCGCTCGCGCCCATGGGCTCTGGCCTCGACGGAGTGATCGGCGACGACGG
TTGGCTCCAGTTTACGCAGCCTGGGGGCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125992:102..482-

>mRNA_M-pyrifera_M_contig125992.5247.1 ID=mRNA_M-pyrifera_M_contig125992.5247.1|Name=mRNA_M-pyrifera_M_contig125992.5247.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig125992:102..482- (Macrocystis pyrifera P11B4 male)
GTGTCCTACGCATACGACGCCCTGCAGCTGACGCAGCTCGTCTACAACGA
GGTGGTCGTCGTGTACGAGGAGGGGGTGGTGGGAGCCGACGGCCAACTGT
GGAGCTACGTGGGAGCCCTGGAGCAGCTCACGATCATCAACGGCAGCTAT
GTGCCTTATCCAGGCTACATTCTCGCCTCTCAGTTGGTCGACTTCGTCGC
TCACGCTCCCACCGGGCCCCTCTACCTCGTCGAGGCCGACTACGTCCCCG
TCTACGGCAGAGAATGCCACATGGTCGGCTGTCTGCCCGACGACATGGTT
GCGCTCGCGCCCATGGGCTCTGGCCTCGACGGAGTGATCGGCGACGACGG
TTGGCTCCAGTTTACGCAGCCTGGGGGCACCGTGTCCTACGCATACGACG
CCCTGCAGCTGACGCAGCTCGTCTACAACGAGGTGGTCGTCGTGTACGAG
GAGGGGGTGGTGGGAGCCGACGGCCAACTGTGGAGCTACGTGGGAGCCCT
GGAGCAGCTCACGATCATCAACGGCAGCTATGTGCCTTATCCAGGCTACA
TTCTCGCCTCTCAGTTGGTCGACTTCGTCGCTCACGCTCCCACCGGGCCC
CTCTACCTCGTCGAGGCCGACTACGTCCCCGTCTACGGCAGAGAATGCCA
CATGGTCGGCTGTCTGCCCGACGACATGGTTGCGCTCGCGCCCATGGGCT
CTGGCCTCGACGGAGTGATCGGCGACGACGGTTGGCTCCAGTTTACGCAG
CCTGGGGGCACC
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