mRNA_M-pyrifera_M_contig125987.5246.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125987.5246.1
Unique NamemRNA_M-pyrifera_M_contig125987.5246.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: A0A7S4MPN6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MPN6_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 1.490e-15
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 QSINGLTAVVLSDSDGVVVLSAGSEYGEATGA-MASKFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFAPLRERL 318
              I G+ AVV++D DGV +++ G    E   A MA+ FS +A+QA+KLR+G C+++    +E  VV H+N  P+VISL+G  + N+GL+LD++  I +   PLR +L
Sbjct:   24 DGIPGVYAVVVADRDGVPIITVGEVPDEHDAAVMATAFSVSADQASKLRLGNCKTIVNMFSEYAVV-HINHLPIVISLLGTPECNIGLALDIADDIKSVLNPLRVKL 129          
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: A0A7S0MJ25_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MJ25_9CRYP)

HSP 1 Score: 68.9 bits (167), Expect = 1.230e-12
Identity = 38/108 (35.19%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 QSINGLTAVVLSDSDGVVVLS-----AGSEYGEATGAMASKFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFAPLR 309
            + + GL  VV+S  DG+ +L        S+   + G + S F+ AA+Q +KL MG  +++TT   +  VVVH+N+SPL+++++   D+N+ + L L+PK+  A  P+R
Sbjct:   13 ERVPGLRVVVVSGGDGIPLLKYPHEPLPSDGSTSLGTLESAFAIAADQVSKLEMGRSKTITTMY-QNQVVVHMNMSPLIVTMVSDSDVNIAVLLALAPKLALALEPIR 119          
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: A0A0G4IL99_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IL99_PLABS)

HSP 1 Score: 63.9 bits (154), Expect = 8.470e-11
Identity = 36/106 (33.96%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 QSINGLTAVVLSDSDGVVVLSAGSEYGEATGAMASKFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFAPLRERL 318
            + + G  A++++D DGV++  A S + +    +++ F  A EQANKL++GE QS+T+   +   VVH N+ PL+++     D N+GL   + PK+ +   P+R +L
Sbjct:   10 EKVPGALAILVNDKDGVLLAQASSSF-DVDPWLSTTFVNALEQANKLQLGEPQSITS-EFDNATVVHFNMMPLIVTFCMRPDANIGLVYAVFPKLRSCLEPIRIKL 113          
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: A0A0L0DI00_THETB (Mitogen-activated protein kinase scaffold protein 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DI00_THETB)

HSP 1 Score: 62.0 bits (149), Expect = 8.000e-10
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    7 INGLTAVVLSDSDGVVVLS----------------AGSEYGEAT---GAMASKFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFAPL 306
            ++GL +++L+DS G V+L                 A ++ GEAT    AM+  F  A +QA KL +G   S+ ++  E  V+V LN++PLV+S IG H +N G  L ++P++ A   PL
Sbjct:   15 VHGLESILLTDSQGAVLLQVTRPVAEDKVEGAADGAEADAGEATVLEPAMSGVFVMACDQAAKLGIGATSSMISYY-ENNVIVQLNVAPLVLSFIGSHQVNAGAVLAMAPELYAGLEPL 132          
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: UPI00143D2781 (ragulator complex protein LAMTOR3-A n=2 Tax=Cynipoidea TaxID=40307 RepID=UPI00143D2781)

HSP 1 Score: 51.2 bits (121), Expect = 8.010e-6
Identity = 37/112 (33.04%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    1 QSINGLTAVVLSDSDGVVVLSAGSEYGEATGAMA---SKFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFAPLRERLRES 327
             S+ GL +++++D DGV VLS  +E     G      S F+ A EQ +KL +G+ +++    +   VV  +N  PLV+S I  H  N G  L L  KI    + L+  + E+
Sbjct:   14 NSVEGLYSILITDRDGVPVLSVANEAAPELGMRTNFLSTFTMATEQGSKLGLGKNKNVICMYSTYQVV-QINKLPLVVSFIASHTCNTGHILSLENKIDPILSSLKSAVAEA 124          
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: A0A834KK41_VESGE (Uncharacterized protein n=5 Tax=Vespidae TaxID=7438 RepID=A0A834KK41_VESGE)

HSP 1 Score: 50.4 bits (119), Expect = 1.580e-5
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 1
Query:    1 QSINGLTAVVLSDSDGVVVLSAGSEYGEATGAMAS---KFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFAPLRERLRES 327
             SI GL +++++D DGV V+S   E        AS    F  A +QA+KL +G+   +         VV LN  PLVIS I  H+ N G  L L  KI    + L+  + E+
Sbjct:   14 NSIEGLHSILITDRDGVPVVSVADEKAPELAMRASFLSTFGMATDQASKLGLGK-NKIVICMYSSYQVVQLNKLPLVISFIASHNCNTGHILSLENKIEPILSNLKSAVVEA 124          
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: A0A5D6Y1S0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1S0_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.030e-5
Identity = 35/108 (32.41%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   16 LTAVVLSDSDGVVVL---------SAGSEYGEATGAMASKFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFAPLRE 312
            L AV++  S+GV +L         S   EY E    + + F+ AAEQ  KL+ G  +++T+F  +  V++H+N SPLVI+L+  +  ++G    L+ ++  A +PL++
Sbjct:   26 LEAVLVCTSEGVPLLKVLADEEKSSLSYEYAETV--LPTIFAGAAEQIGKLKFGAVRTVTSFF-DNAVLIHINDSPLVITLVAANTAHIGALQALARELCPALSPLKK 130          
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: UPI001304640A (ragulator complex protein LAMTOR3-A n=1 Tax=Nomia melanderi TaxID=2448451 RepID=UPI001304640A)

HSP 1 Score: 49.7 bits (117), Expect = 3.170e-5
Identity = 37/111 (33.33%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 QSINGLTAVVLSDSDGVVVLSAGSEYGEATGAMAS---KFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFAPLRERLRE 324
             SI GL +++++D DGV V+S   +        AS    F+ A +Q +KL +G+ +++    +   VV  +N  PLVIS IG H+ N G  L L  KI    + L+  + E
Sbjct:   14 NSIEGLHSILITDRDGVPVVSVADKKAPELAMRASFLSTFAIATDQGSKLGLGKNKTIICMYSSYQVV-QMNKLPLVISFIGSHNCNTGHILSLENKIDPILSNLKNVVEE 123          
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: A0A2R5GH48_9STRA (Ragulator complex protein LAMTOR3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GH48_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.910e-5
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    1 QSINGLTAVVLSDSDGVVV----LSAGSEYGEATGAMASKFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGL--SLDLSPKILAAFAPLRE 312
            + + G++ VVLS +D +      +  G  +GE      S  S   +Q +KL+ G+ +S+     +   +VH+NL+PLV++++G  DL+V L  S +L  ++   F PLR+
Sbjct:   14 KEVPGVSGVVLSTADAICFGQRWVDGG--HGEPRNQSVSAVSVIIDQVSKLQFGQMRSVVA-QFQASQLVHINLAPLVLTVVGTSDLDVDLLTSTELHERLQKGFQPLRD 120          
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Match: UPI000771D500 (ragulator complex protein LAMTOR3-A n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771D500)

HSP 1 Score: 48.9 bits (115), Expect = 6.130e-5
Identity = 36/112 (32.14%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    1 QSINGLTAVVLSDSDGVVVLSAGSEYGEATGAMAS---KFSAAAEQANKLRMGECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFAPLRERLRES 327
             S+ GL +++++D DGV V+S  +E        AS    F  A +Q +KL +G+ ++L    +   VV  +N  PLV+S I  H+ N G  L L  KI    + L+  + E+
Sbjct:   14 NSVEGLHSILITDRDGVPVISVVNEKAPELATRASFLSTFGMATDQGSKLGLGKNKALICMYSSYQVV-QMNKLPLVVSFIASHNCNTGHILSLENKIDPILSSLKNAVVEA 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125987.5246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7S4MPN6_9EUKA1.490e-1542.06Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S0MJ25_9CRYP1.230e-1235.19Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A0G4IL99_PLABS8.470e-1133.96Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0L0DI00_THETB8.000e-1035.29Mitogen-activated protein kinase scaffold protein ... [more]
UPI00143D27818.010e-633.04ragulator complex protein LAMTOR3-A n=2 Tax=Cynipo... [more]
A0A834KK41_VESGE1.580e-534.82Uncharacterized protein n=5 Tax=Vespidae TaxID=743... [more]
A0A5D6Y1S0_9STRA2.030e-532.41Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
UPI001304640A3.170e-533.33ragulator complex protein LAMTOR3-A n=1 Tax=Nomia ... [more]
A0A2R5GH48_9STRA5.910e-530.91Ragulator complex protein LAMTOR3 n=1 Tax=Hondaea ... [more]
UPI000771D5006.130e-532.14ragulator complex protein LAMTOR3-A n=1 Tax=Cephus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125987contigM-pyrifera_M_contig125987:68..409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog227086.JGI_V11_81175
KEGG koko:K04370
KEGG Pathwayko04010,ko04150,map04010,map04150
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitogen-activated protein kinase kinase 1 interacting
EggNOG OGs2A8R2@1,2SE9A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.1571386-CDS-M-pyrifera_M_contig125987:67..4091622815775.1571386-CDS-M-pyrifera_M_contig125987:67..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125987 68..409 -
1692277563.6512227-CDS-M-pyrifera_M_contig125987:67..4091692277563.6512227-CDS-M-pyrifera_M_contig125987:67..409Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125987 68..409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125987.5246.1prot_M-pyrifera_M_contig125987.5246.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125987 68..409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125987.5246.1

>prot_M-pyrifera_M_contig125987.5246.1 ID=prot_M-pyrifera_M_contig125987.5246.1|Name=mRNA_M-pyrifera_M_contig125987.5246.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
QSINGLTAVVLSDSDGVVVLSAGSEYGEATGAMASKFSAAAEQANKLRMG
ECQSLTTFAAEGGVVVHLNLSPLVISLIGGHDLNVGLSLDLSPKILAAFA
PLRERLRESAYTQ*
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mRNA from alignment at M-pyrifera_M_contig125987:68..409-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125987.5246.1 ID=mRNA_M-pyrifera_M_contig125987.5246.1|Name=mRNA_M-pyrifera_M_contig125987.5246.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig125987:68..409- (Macrocystis pyrifera P11B4 male)
CAAAGTATCAATGGCTTGACTGCCGTTGTGCTGTCGGACAGCGACGGAGT TGTGGTGCTGAGCGCGGGCTCAGAGTACGGAGAAGCGACGGGAGCGATGG CTTCGAAGTTCTCCGCTGCCGCTGAACAAGCGAACAAACTCAGGATGGGA GAGTGCCAATCACTCACTACCTTTGCAGCCGAGGGTGGCGTCGTCGTCCA CCTCAATCTCTCGCCGCTCGTCATCAGTCTCATTGGAGGCCACGACCTCA ACGTCGGCCTCAGCCTCGACCTTTCGCCCAAGATCCTCGCCGCCTTCGCT CCCCTGCGCGAGCGTCTGAGGGAGTCTGCATACACCCAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125987:68..409-

>mRNA_M-pyrifera_M_contig125987.5246.1 ID=mRNA_M-pyrifera_M_contig125987.5246.1|Name=mRNA_M-pyrifera_M_contig125987.5246.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig125987:68..409- (Macrocystis pyrifera P11B4 male)
CAAAGTATCAATGGCTTGACTGCCGTTGTGCTGTCGGACAGCGACGGAGT
TGTGGTGCTGAGCGCGGGCTCAGAGTACGGAGAAGCGACGGGAGCGATGG
CTTCGAAGTTCTCCGCTGCCGCTGAACAAGCGAACAAACTCAGGATGGGA
GAGTGCCAATCACTCACTACCTTTGCAGCCGAGGGTGGCGTCGTCGTCCA
CCTCAATCTCTCGCCGCTCGTCATCAGTCTCATTGGAGGCCACGACCTCA
ACGTCGGCCTCAGCCTCGACCTTTCGCCCAAGATCCTCGCCGCCTTCGCT
CCCCTGCGCGAGCGTCTGAGGGAGTCTGCATACACCCAGTGACAAAGTAT
CAATGGCTTGACTGCCGTTGTGCTGTCGGACAGCGACGGAGTTGTGGTGC
TGAGCGCGGGCTCAGAGTACGGAGAAGCGACGGGAGCGATGGCTTCGAAG
TTCTCCGCTGCCGCTGAACAAGCGAACAAACTCAGGATGGGAGAGTGCCA
ATCACTCACTACCTTTGCAGCCGAGGGTGGCGTCGTCGTCCACCTCAATC
TCTCGCCGCTCGTCATCAGTCTCATTGGAGGCCACGACCTCAACGTCGGC
CTCAGCCTCGACCTTTCGCCCAAGATCCTCGCCGCCTTCGCTCCCCTGCG
CGAGCGTCTGAGGGAGTCTGCATACACCCAGTGA
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